Search of human proteins with 46409260

Search of human proteins with 46409260

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|46409260 hypothetical protein LOC90288 [Homo sapiens]
         (572 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|46409260 hypothetical protein LOC90288 [Homo sapiens]             1176   0.0  
gi|40353729 Ras and Rab interactor 3 [Homo sapiens]                    37   0.049
gi|92091600 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...    37   0.064
gi|239755176 PREDICTED: similar to solute carrier family 25, mem...    35   0.19 
gi|239755174 PREDICTED: similar to solute carrier family 25, mem...    35   0.19 
gi|56699407 solute carrier family 25, member 25 isoform c [Homo ...    35   0.19 
gi|56699401 solute carrier family 25, member 25 isoform a [Homo ...    35   0.19 
gi|56699403 solute carrier family 25, member 25 isoform b [Homo ...    35   0.19 
gi|110349719 titin isoform N2-A [Homo sapiens]                         34   0.32 
gi|48476342 solute carrier family 25, member 23 [Homo sapiens]         34   0.32 
gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithora...    34   0.41 
gi|90819233 myeloid/lymphoid or mixed-lineage leukemia (trithora...    34   0.41 
gi|90819231 myeloid/lymphoid or mixed-lineage leukemia (trithora...    34   0.41 
gi|63055059 SH3 and PX domains 2B [Homo sapiens]                       34   0.41 
gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo s...    33   0.54 
gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo sa...    33   0.54 
gi|224591430 Ly1 antibody reactive homolog [Homo sapiens]              33   0.54 
gi|8923398 Ly1 antibody reactive homolog [Homo sapiens]                33   0.54 
gi|24431933 reticulon 4 isoform B [Homo sapiens]                       33   0.71 
gi|47519490 reticulon 4 isoform D [Homo sapiens]                       33   0.71 
gi|24431935 reticulon 4 isoform A [Homo sapiens]                       33   0.71 
gi|31543148 hypothetical protein LOC79173 [Homo sapiens]               32   1.2  
gi|4557719 DNA ligase I [Homo sapiens]                                 32   1.6  
gi|18379328 WW domain-containing adapter with a coiled-coil regi...    32   1.6  
gi|5729929 matrix metalloproteinase 24 preproprotein [Homo sapiens]    32   2.1  
gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens]    32   2.1  
gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens]    32   2.1  
gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens]    32   2.1  
gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens]    32   2.1  
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom...    31   2.7  

>gi|46409260 hypothetical protein LOC90288 [Homo sapiens]
          Length = 572

 Score = 1176 bits (3043), Expect = 0.0
 Identities = 572/572 (100%), Positives = 572/572 (100%)

Query: 1   MDDDYEAYHSLFLSLLGLCPSKTPINENAPVFDPEPVIAHCFKQFQQKDFRLPQTRRRII 60
           MDDDYEAYHSLFLSLLGLCPSKTPINENAPVFDPEPVIAHCFKQFQQKDFRLPQTRRRII
Sbjct: 1   MDDDYEAYHSLFLSLLGLCPSKTPINENAPVFDPEPVIAHCFKQFQQKDFRLPQTRRRII 60

Query: 61  MVPRKEDQTPLNPASQPQAPPKPIPSFKVLEARDIQEQPEDRKTWLSQRSKLRQELESFG 120
           MVPRKEDQTPLNPASQPQAPPKPIPSFKVLEARDIQEQPEDRKTWLSQRSKLRQELESFG
Sbjct: 61  MVPRKEDQTPLNPASQPQAPPKPIPSFKVLEARDIQEQPEDRKTWLSQRSKLRQELESFG 120

Query: 121 DVKRWLENKPSITPSEAKVLHMIHEEQSAQPNASQATTRTTRKKAPRLSRLSRQMVPQLQ 180
           DVKRWLENKPSITPSEAKVLHMIHEEQSAQPNASQATTRTTRKKAPRLSRLSRQMVPQLQ
Sbjct: 121 DVKRWLENKPSITPSEAKVLHMIHEEQSAQPNASQATTRTTRKKAPRLSRLSRQMVPQLQ 180

Query: 181 LPEPPALSVMYSYLHSRKIKILEIFHKVGQGENQRITREEFIAAVKAVGVPLKNQEVEDI 240
           LPEPPALSVMYSYLHSRKIKILEIFHKVGQGENQRITREEFIAAVKAVGVPLKNQEVEDI
Sbjct: 181 LPEPPALSVMYSYLHSRKIKILEIFHKVGQGENQRITREEFIAAVKAVGVPLKNQEVEDI 240

Query: 241 VIYLSSLGKHNTITMDILANTYKQWSMAQQRSSLATAREHYILAKHRDSLKGPLKKQEVD 300
           VIYLSSLGKHNTITMDILANTYKQWSMAQQRSSLATAREHYILAKHRDSLKGPLKKQEVD
Sbjct: 241 VIYLSSLGKHNTITMDILANTYKQWSMAQQRSSLATAREHYILAKHRDSLKGPLKKQEVD 300

Query: 301 SAPQLPKVDLLTVPAVDTQMETRPMTLEEMEEVGKRYRERQRQHKLTIPSIQYTEQCHLV 360
           SAPQLPKVDLLTVPAVDTQMETRPMTLEEMEEVGKRYRERQRQHKLTIPSIQYTEQCHLV
Sbjct: 301 SAPQLPKVDLLTVPAVDTQMETRPMTLEEMEEVGKRYRERQRQHKLTIPSIQYTEQCHLV 360

Query: 361 RCGNRHFDEHCLPSTIHGDMRELIDSARRHNFLVYLQCWKLCKSYGLPLTEDILMKALLY 420
           RCGNRHFDEHCLPSTIHGDMRELIDSARRHNFLVYLQCWKLCKSYGLPLTEDILMKALLY
Sbjct: 361 RCGNRHFDEHCLPSTIHGDMRELIDSARRHNFLVYLQCWKLCKSYGLPLTEDILMKALLY 420

Query: 421 PGDKIIFQMDKVCPIRQPGGYYSDWKVFSPNLALLRSQGPGKSKRTDKKTPKKSKKMRFK 480
           PGDKIIFQMDKVCPIRQPGGYYSDWKVFSPNLALLRSQGPGKSKRTDKKTPKKSKKMRFK
Sbjct: 421 PGDKIIFQMDKVCPIRQPGGYYSDWKVFSPNLALLRSQGPGKSKRTDKKTPKKSKKMRFK 480

Query: 481 EFEEFTRKLKVKRSSGLQQTHPNSFWPGHLLDKLQLYLPTVATDRSLALFSCVQHQPHVY 540
           EFEEFTRKLKVKRSSGLQQTHPNSFWPGHLLDKLQLYLPTVATDRSLALFSCVQHQPHVY
Sbjct: 481 EFEEFTRKLKVKRSSGLQQTHPNSFWPGHLLDKLQLYLPTVATDRSLALFSCVQHQPHVY 540

Query: 541 PATYHPDHWWPLRNKNYMTHAHYDAAKVYYIN 572
           PATYHPDHWWPLRNKNYMTHAHYDAAKVYYIN
Sbjct: 541 PATYHPDHWWPLRNKNYMTHAHYDAAKVYYIN 572


>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
          Length = 985

 Score = 37.0 bits (84), Expect = 0.049
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 5/125 (4%)

Query: 63  PRKEDQTPLNPASQP--QAPPKPIPSFKVLEARDIQEQPEDRKTWLSQRSKLRQELESFG 120
           P +E+      AS P  Q P  P+P+ K L     + +  +R +   Q   +  E +   
Sbjct: 353 PLREEAMKPGAASSPLQQVPAPPLPAKKNLPTAPPRRRVSERVSLEDQSPGMAAEGDQLS 412

Query: 121 DVKRWLENKPSITPSEAKVLHMIHEEQSAQPNASQATTRTTRK---KAPRLSRLSRQMVP 177
              +   + P  TP E+       E +++ P++     RT ++     PR  R+SRQ+  
Sbjct: 413 LPPQGTSDGPEDTPRESTEQGQDTEVKASDPHSMPELPRTAKQPPVPPPRKKRISRQLAS 472

Query: 178 QLQLP 182
            L  P
Sbjct: 473 TLPAP 477


>gi|92091600 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain
           1 isoform c [Homo sapiens]
          Length = 1450

 Score = 36.6 bits (83), Expect = 0.064
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 53  PQTRRRIIMVPRKEDQTPLNPASQPQAPPKPIPSFKVLEARDIQEQPED 101
           PQ+   +  +P+   Q P  P   P+ PPKP+  F   +  D  E PE+
Sbjct: 189 PQSEEPLSTLPQGPPQPPSPPPCPPEIPPKPVRLFPEFDDSDYDEVPEE 237


>gi|239755176 PREDICTED: similar to solute carrier family 25, member
           25 isoform 2 [Homo sapiens]
          Length = 469

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 193 YLHSRKIKILEIFHKVGQGENQRITREEFIAAVKAVGVPLKNQEVEDIVIYLSSLGKHNT 252
           YL   + K+  +F  + +  + RI  +E + +++ +GV +  Q+ E I   L S+ K+ T
Sbjct: 75  YLQDHEKKLRLVFKSLDKKNDGRIDAQEIMQSLRDLGVKISEQQAEKI---LKSMDKNGT 131

Query: 253 ITMD 256
           +T+D
Sbjct: 132 MTID 135


>gi|239755174 PREDICTED: similar to solute carrier family 25, member
           25 isoform 1 [Homo sapiens]
          Length = 503

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 193 YLHSRKIKILEIFHKVGQGENQRITREEFIAAVKAVGVPLKNQEVEDIVIYLSSLGKHNT 252
           YL   + K+  +F  + +  + RI  +E + +++ +GV +  Q+ E I   L S+ K+ T
Sbjct: 109 YLQDHEKKLRLVFKSLDKKNDGRIDAQEIMQSLRDLGVKISEQQAEKI---LKSMDKNGT 165

Query: 253 ITMD 256
           +T+D
Sbjct: 166 MTID 169


>gi|56699407 solute carrier family 25, member 25 isoform c [Homo
           sapiens]
          Length = 489

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 193 YLHSRKIKILEIFHKVGQGENQRITREEFIAAVKAVGVPLKNQEVEDIVIYLSSLGKHNT 252
           YL   + K+  +F  + +  + RI  +E + +++ +GV +  Q+ E I   L S+ K+ T
Sbjct: 95  YLQDHEKKLRLVFKSLDKKNDGRIDAQEIMQSLRDLGVKISEQQAEKI---LKSMDKNGT 151

Query: 253 ITMD 256
           +T+D
Sbjct: 152 MTID 155


>gi|56699401 solute carrier family 25, member 25 isoform a [Homo
           sapiens]
          Length = 469

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 193 YLHSRKIKILEIFHKVGQGENQRITREEFIAAVKAVGVPLKNQEVEDIVIYLSSLGKHNT 252
           YL   + K+  +F  + +  + RI  +E + +++ +GV +  Q+ E I   L S+ K+ T
Sbjct: 75  YLQDHEKKLRLVFKSLDKKNDGRIDAQEIMQSLRDLGVKISEQQAEKI---LKSMDKNGT 131

Query: 253 ITMD 256
           +T+D
Sbjct: 132 MTID 135


>gi|56699403 solute carrier family 25, member 25 isoform b [Homo
           sapiens]
          Length = 503

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 193 YLHSRKIKILEIFHKVGQGENQRITREEFIAAVKAVGVPLKNQEVEDIVIYLSSLGKHNT 252
           YL   + K+  +F  + +  + RI  +E + +++ +GV +  Q+ E I   L S+ K+ T
Sbjct: 109 YLQDHEKKLRLVFKSLDKKNDGRIDAQEIMQSLRDLGVKISEQQAEKI---LKSMDKNGT 165

Query: 253 ITMD 256
           +T+D
Sbjct: 166 MTID 169


>gi|110349719 titin isoform N2-A [Homo sapiens]
          Length = 33423

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 15/144 (10%)

Query: 51    RLPQTRRRIIMVPRK---EDQTPLNPASQPQAPPKPIPSF--KVLEARDI----QEQPED 101
             R+P T+   ++ P++   E + P+ PA +P+APP  +P    +V+  + +     ++PE 
Sbjct: 10489 RVPPTKVPEVLPPKEVVPEKKVPVPPAKKPEAPPPKVPEAPKEVVPEKKVPVPPPKKPEV 10548

Query: 102   RKTWLSQRSKLRQELESFGDVKRWLENKPSITPSEAKVLHMIHEEQSAQPNASQATTRTT 161
               T + +  K     +    V   +  KP   P E          +   P A       T
Sbjct: 10549 PPTKVPEVPKAAVPEKK---VPEAIPPKPESPPPEVPEAPKEVVPEKKVPAAPPKKPEVT 10605

Query: 162   RKKAPRLSRLSRQMVPQLQLPEPP 185
               K P      +++VP+ ++P PP
Sbjct: 10606 PVKVP---EAPKEVVPEKKVPVPP 10626



 Score = 32.3 bits (72), Expect = 1.2
 Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 13/165 (7%)

Query: 20   PSKTPINENAPVFDPEPVIAHCFKQFQQKDFRLPQTRRRIIMVPRKEDQTPLNPASQPQA 79
            P K    E APV  P+ V     K  +     +P+ ++ +  VP+KE   P  P   P+ 
Sbjct: 9292 PEKPAPEEVAPVPIPKKVEPPAPKVPEVPKKPVPEEKKPV-PVPKKE---PAAPPKVPEV 9347

Query: 80   PPKPIPSFKVLEARDIQEQPEDRKTWLSQRSKLRQELESFGDVKRWLENKPSITPSEAKV 139
            P KP+P  K+      +++    K    Q+  + +E  +   V +  E+ P   P   K 
Sbjct: 9348 PKKPVPEEKIPVPVAKKKEAPPAKVPEVQKGVVTEEKITI--VTQREESPPPAVPEIPK- 9404

Query: 140  LHMIHEEQSAQPNASQATTRTTRKKAPRLSRLSRQMVPQLQLPEP 184
               + EE+   P   +          P++  L ++ VP+ ++  P
Sbjct: 9405 -KKVPEERKPVPRKEEEV-----PPPPKVPALPKKPVPEEKVAVP 9443



 Score = 31.2 bits (69), Expect = 2.7
 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 51   RLPQTRRRIIMVPRKEDQTPLNPASQPQAPPKPIPSFKVLEARDIQEQPEDRKTWLSQRS 110
            ++P+ R+    VPRKE++ P  P   P  P KP+P  KV     + ++    +  +S+++
Sbjct: 9406 KVPEERKP---VPRKEEEVP-PPPKVPALPKKPVPEEKVAVPVPVAKKAPPPRAEVSKKT 9461

Query: 111  KLRQE 115
             + ++
Sbjct: 9462 VVEEK 9466


>gi|48476342 solute carrier family 25, member 23 [Homo sapiens]
          Length = 468

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 20/91 (21%)

Query: 193 YLHSRKIKILEIFHKVGQGENQRITREEFIAAVKAVGVPLKNQEVEDIVIYLSSLGKHNT 252
           YL  R+ ++L +FH + + ++  I   E   + +A+G+ +  ++ E I   L S+ +  T
Sbjct: 74  YLQEREQRLLLMFHSLDRNQDGHIDVSEIQQSFRALGISISLEQAEKI---LHSMDRDGT 130

Query: 253 ITMDILANTYKQWSMAQQRSSLATAREHYIL 283
           +T+D     +++W            R+H++L
Sbjct: 131 MTID-----WQEW------------RDHFLL 144


>gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithorax
            homolog, Drosophila); translocated to, 4 isoform 1 [Homo
            sapiens]
          Length = 1834

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 96   QEQPEDRKTWLSQRSKLRQELESFGDVKRWLENKPSITPSEAKVLHMIHEEQSAQPNASQ 155
            QE+  + K +  +R ++   ++   D   W+    S+  S +   H+ H  +S  P ++ 
Sbjct: 1275 QEELREDKAYQLERHRIEAAMDRKSDSDMWINQSSSLDSSTSSQEHLNHSSKSVTPASTL 1334

Query: 156  ATTRTTRKKAPRLSRLSRQMVPQ---LQLPEPP 185
              +   R K P     +   V Q     LP PP
Sbjct: 1335 TKSGPGRWKTPAAIPATPVAVSQPIRTDLPPPP 1367


>gi|90819233 myeloid/lymphoid or mixed-lineage leukemia (trithorax
            homolog, Drosophila); translocated to, 4 isoform 2 [Homo
            sapiens]
          Length = 1651

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 96   QEQPEDRKTWLSQRSKLRQELESFGDVKRWLENKPSITPSEAKVLHMIHEEQSAQPNASQ 155
            QE+  + K +  +R ++   ++   D   W+    S+  S +   H+ H  +S  P ++ 
Sbjct: 1276 QEELREDKAYQLERHRIEAAMDRKSDSDMWINQSSSLDSSTSSQEHLNHSSKSVTPASTL 1335

Query: 156  ATTRTTRKKAPRLSRLSRQMVPQ---LQLPEPP 185
              +   R K P     +   V Q     LP PP
Sbjct: 1336 TKSGPGRWKTPAAIPATPVAVSQPIRTDLPPPP 1368


>gi|90819231 myeloid/lymphoid or mixed-lineage leukemia (trithorax
            homolog, Drosophila); translocated to, 4 isoform 3 [Homo
            sapiens]
          Length = 1612

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 96   QEQPEDRKTWLSQRSKLRQELESFGDVKRWLENKPSITPSEAKVLHMIHEEQSAQPNASQ 155
            QE+  + K +  +R ++   ++   D   W+    S+  S +   H+ H  +S  P ++ 
Sbjct: 1260 QEELREDKAYQLERHRIEAAMDRKSDSDMWINQSSSLDSSTSSQEHLNHSSKSVTPASTL 1319

Query: 156  ATTRTTRKKAPRLSRLSRQMVPQ---LQLPEPP 185
              +   R K P     +   V Q     LP PP
Sbjct: 1320 TKSGPGRWKTPAAIPATPVAVSQPIRTDLPPPP 1352


>gi|63055059 SH3 and PX domains 2B [Homo sapiens]
          Length = 911

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 8/73 (10%)

Query: 43  KQFQQKDFRLPQTRRRIIMVPRKEDQTPLNP--ASQPQAPPKPIPSFKVLEARDIQEQPE 100
           K+ ++ + R P ++ +  +   K D TP NP   S+PQ  PKP PS K         Q E
Sbjct: 605 KEVKKPNLR-PISKSKTDLPEEKPDATPQNPFLKSRPQVRPKPAPSPKT-----EPPQGE 658

Query: 101 DRKTWLSQRSKLR 113
           D+    + RSKLR
Sbjct: 659 DQVDICNLRSKLR 671


>gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo
           sapiens]
          Length = 1235

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 47/196 (23%), Positives = 69/196 (35%), Gaps = 37/196 (18%)

Query: 22  KTPINENAPVFDPEPVIAHCFKQFQ---------------QKDFRLPQTRRRIIMVPRKE 66
           K PI E   + DP P +A    Q Q               Q+    PQ        P+  
Sbjct: 286 KEPIFEPVVLKDPCPQVAQPIPQPQTEPQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQGP 345

Query: 67  DQTPLNPASQPQA--PPKPIPSFKVLEAR--DIQEQPEDRKTWLSQRSKLRQELESFGDV 122
            +  L PA QPQ   PP+P    ++L      +Q  P  +         L Q L ++   
Sbjct: 346 PEAQLQPAPQPQVQRPPRPQSPTQLLHQNLPPVQAHPSAQS--------LSQPLSAYNSS 397

Query: 123 K---RWLENKPSITPSEAKVL--HMIHEEQSAQ-----PNASQATTRTTRKKAPRLSRLS 172
                 L +  S TP++ +    H+ H   ++      PN S   + T   + P  S   
Sbjct: 398 SLSLNSLSSSRSSTPAKTQPAPPHISHHPSASPFPLSLPNHSPLHSFTPTLQPPAHSHHP 457

Query: 173 RQMVPQLQLPEPPALS 188
               P   LP PP L+
Sbjct: 458 NMFAPPTALPPPPPLT 473


>gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo
           sapiens]
          Length = 1259

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 47/196 (23%), Positives = 69/196 (35%), Gaps = 37/196 (18%)

Query: 22  KTPINENAPVFDPEPVIAHCFKQFQ---------------QKDFRLPQTRRRIIMVPRKE 66
           K PI E   + DP P +A    Q Q               Q+    PQ        P+  
Sbjct: 286 KEPIFEPVVLKDPCPQVAQPIPQPQTEPQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQGP 345

Query: 67  DQTPLNPASQPQA--PPKPIPSFKVLEAR--DIQEQPEDRKTWLSQRSKLRQELESFGDV 122
            +  L PA QPQ   PP+P    ++L      +Q  P  +         L Q L ++   
Sbjct: 346 PEAQLQPAPQPQVQRPPRPQSPTQLLHQNLPPVQAHPSAQS--------LSQPLSAYNSS 397

Query: 123 K---RWLENKPSITPSEAKVL--HMIHEEQSAQ-----PNASQATTRTTRKKAPRLSRLS 172
                 L +  S TP++ +    H+ H   ++      PN S   + T   + P  S   
Sbjct: 398 SLSLNSLSSSRSSTPAKTQPAPPHISHHPSASPFPLSLPNHSPLHSFTPTLQPPAHSHHP 457

Query: 173 RQMVPQLQLPEPPALS 188
               P   LP PP L+
Sbjct: 458 NMFAPPTALPPPPPLT 473


>gi|224591430 Ly1 antibody reactive homolog [Homo sapiens]
          Length = 379

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 62  VPRKEDQTPLNPASQPQAP-PKPIPSFKVLEARDIQ-EQPEDRKTWLSQRSKLRQELESF 119
           V +++DQ PL+P + P A     +P+ KV +A + Q E  ++++    +R K R+  +  
Sbjct: 146 VNKEQDQRPLHPVANPHAEISTKVPASKVKDAVEQQGEVKKNKRERKEERQKKRKREKKE 205

Query: 120 GDVKRWLENKPSITPSEAKVLHMIHEEQSAQ--PNASQATTRTTRKKAPRLSRLSRQ 174
             ++   EN  +  P + K       E   +  P A+ +  + ++KK  R    S +
Sbjct: 206 LKLENHQENSRNQKPKKRKKGQEADLEAGGEEVPEANGSAGKRSKKKKQRKDSASEE 262


>gi|8923398 Ly1 antibody reactive homolog [Homo sapiens]
          Length = 379

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 62  VPRKEDQTPLNPASQPQAP-PKPIPSFKVLEARDIQ-EQPEDRKTWLSQRSKLRQELESF 119
           V +++DQ PL+P + P A     +P+ KV +A + Q E  ++++    +R K R+  +  
Sbjct: 146 VNKEQDQRPLHPVANPHAEISTKVPASKVKDAVEQQGEVKKNKRERKEERQKKRKREKKE 205

Query: 120 GDVKRWLENKPSITPSEAKVLHMIHEEQSAQ--PNASQATTRTTRKKAPRLSRLSRQ 174
             ++   EN  +  P + K       E   +  P A+ +  + ++KK  R    S +
Sbjct: 206 LKLENHQENSRNQKPKKRKKGQEADLEAGGEEVPEANGSAGKRSKKKKQRKDSASEE 262


>gi|24431933 reticulon 4 isoform B [Homo sapiens]
          Length = 373

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)

Query: 67  DQTPLNPASQPQAPPKPIPSFKVLEARDIQEQPEDRKTWLSQRSKLRQELESFGDVKRWL 126
           DQ+PL   S   +PP+P P+FK    R+ +++ E+ +       +  +ELE        L
Sbjct: 5   DQSPL--VSSSDSPPRPQPAFKYQFVREPEDEEEEEEEEEEDEDEDLEELEV-------L 55

Query: 127 ENKPSITPSEAKV 139
           E KP+   S A V
Sbjct: 56  ERKPAAGLSAAPV 68


>gi|47519490 reticulon 4 isoform D [Homo sapiens]
          Length = 392

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)

Query: 67  DQTPLNPASQPQAPPKPIPSFKVLEARDIQEQPEDRKTWLSQRSKLRQELESFGDVKRWL 126
           DQ+PL   S   +PP+P P+FK    R+ +++ E+ +       +  +ELE        L
Sbjct: 5   DQSPL--VSSSDSPPRPQPAFKYQFVREPEDEEEEEEEEEEDEDEDLEELEV-------L 55

Query: 127 ENKPSITPSEAKV 139
           E KP+   S A V
Sbjct: 56  ERKPAAGLSAAPV 68


>gi|24431935 reticulon 4 isoform A [Homo sapiens]
          Length = 1192

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)

Query: 67  DQTPLNPASQPQAPPKPIPSFKVLEARDIQEQPEDRKTWLSQRSKLRQELESFGDVKRWL 126
           DQ+PL   S   +PP+P P+FK    R+ +++ E+ +       +  +ELE        L
Sbjct: 5   DQSPL--VSSSDSPPRPQPAFKYQFVREPEDEEEEEEEEEEDEDEDLEELEV-------L 55

Query: 127 ENKPSITPSEAKV 139
           E KP+   S A V
Sbjct: 56  ERKPAAGLSAAPV 68


>gi|31543148 hypothetical protein LOC79173 [Homo sapiens]
          Length = 637

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 13/111 (11%)

Query: 17  GLCPSKTPINENAPVF--DPEPVIAHCFKQFQQKDFRL---PQTRRR-------IIMVPR 64
           GLCP K   N     F  DP+  +  C    ++ + +L   P T++        +   P 
Sbjct: 13  GLCPPKPLKNPRLGDFYGDPQSSMLGCLHHPEEPEGKLGPVPSTQQHGEEPGKAVSSSPD 72

Query: 65  KEDQTPLNPASQPQAPPKPIPSFKVLEARDIQEQPEDRKTWLSQRSKLRQE 115
           +E  +P     QP+  P P+P  +    R + +  + RKT ++++ +++ E
Sbjct: 73  EETGSPCRLLRQPEKEPAPLPPSQNSFGRFVPQFAKSRKT-VTRKEEMKDE 122


>gi|4557719 DNA ligase I [Homo sapiens]
          Length = 919

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 10/117 (8%)

Query: 67  DQTPLNPASQPQAPPKPIPSFKVLEARDIQEQPEDRKTWLSQRSKLRQELESFGDVKRWL 126
           D +P++  S P   PK   + K L  R IQE  E++     + +K ++E E         
Sbjct: 107 DTSPMD--SSPSGIPKRRTARKQLPKRTIQEVLEEQSEDEDREAKRKKEEEE-------- 156

Query: 127 ENKPSITPSEAKVLHMIHEEQSAQPNASQATTRTTRKKAPRLSRLSRQMVPQLQLPE 183
           E  P  + +EA+V      E   QP       +T++ + P  S    ++  + +L E
Sbjct: 157 EETPKESLTEAEVATEKEGEDGDQPTTPPKPLKTSKAETPTESVSEPEVATKQELQE 213


>gi|18379328 WW domain-containing adapter with a coiled-coil region
           isoform 1 [Homo sapiens]
          Length = 647

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 37/140 (26%), Positives = 50/140 (35%), Gaps = 12/140 (8%)

Query: 48  KDFRLPQTRRRIIMVPRKEDQTPLNPASQPQAPPKPIPSFKVLEARDIQEQPEDRKTWLS 107
           +D+RLP+        P    Q P+ P   P A P  +PS       D Q +        S
Sbjct: 230 RDYRLPRAETHSSSTPV---QHPIKPVVHPTATPSTVPSSPFTLQSDHQPKKSFDANGAS 286

Query: 108 QRSKLRQELESFGDVKRWLENKPSITPSEAKVLHMIHEEQSAQPNASQATTRTTRKKAPR 167
             SKL     S    K   E K S T  +  V H      ++  +    T+      AP 
Sbjct: 287 TLSKLPTPTSSVPAQK--TERKES-TSGDKPVSHSCTTPSTSSASGLNPTS------APP 337

Query: 168 LSRLSRQMVPQLQLPEPPAL 187
            S  +  + P  Q P PP L
Sbjct: 338 TSASAVPVSPVPQSPIPPLL 357


>gi|5729929 matrix metalloproteinase 24 preproprotein [Homo sapiens]
          Length = 645

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 33  DPEPVIAHCFKQFQQKDFRLPQTRRRIIMVPRKEDQTPLNPASQPQAPPKPIPSFKVLEA 92
           DP  ++A  ++  +  +F+LPQ   + I       Q    P ++P  P +P+P+  V   
Sbjct: 295 DPSAIMAPFYQYMETHNFKLPQDDLQGI-------QKIYGPPAEPLEPTRPLPTLPVRRI 347

Query: 93  RDIQEQPEDRK 103
               E+  +R+
Sbjct: 348 HSPSERKHERQ 358


>gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens]
          Length = 1031

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 29/128 (22%), Positives = 42/128 (32%), Gaps = 14/128 (10%)

Query: 61  MVPRKEDQTPLNPASQPQAPPKPIPSFKVLEARDIQEQPEDRKTWLSQRSKLRQELESFG 120
           M  R+    P +P S P  P  P+    V+  + +  + +     + Q+  L        
Sbjct: 408 MQSRENIWVPADPVSPPSLPSVPLLESLVMGPQGVLSESKALWETMGQKENL-------- 459

Query: 121 DVKRWLENKPSITPSEAKVLHMIHEEQSAQPNASQATTRTTRKKAPRLSRLSRQMVPQLQ 180
               W  + P    S      M  E     P    AT+  T K        S    P L 
Sbjct: 460 ----WASDSPDPVHSTPPTTLM--EPHRINPGECLATSEATWKDTEHSRNSSASRSPSLA 513

Query: 181 LPEPPALS 188
           L  PPAL+
Sbjct: 514 LSPPPALA 521


>gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens]
          Length = 1006

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 29/128 (22%), Positives = 42/128 (32%), Gaps = 14/128 (10%)

Query: 61  MVPRKEDQTPLNPASQPQAPPKPIPSFKVLEARDIQEQPEDRKTWLSQRSKLRQELESFG 120
           M  R+    P +P S P  P  P+    V+  + +  + +     + Q+  L        
Sbjct: 383 MQSRENIWVPADPVSPPSLPSVPLLESLVMGPQGVLSESKALWETMGQKENL-------- 434

Query: 121 DVKRWLENKPSITPSEAKVLHMIHEEQSAQPNASQATTRTTRKKAPRLSRLSRQMVPQLQ 180
               W  + P    S      M  E     P    AT+  T K        S    P L 
Sbjct: 435 ----WASDSPDPVHSTPPTTLM--EPHRINPGECLATSEATWKDTEHSRNSSASRSPSLA 488

Query: 181 LPEPPALS 188
           L  PPAL+
Sbjct: 489 LSPPPALA 496


>gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens]
          Length = 1044

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 29/128 (22%), Positives = 42/128 (32%), Gaps = 14/128 (10%)

Query: 61  MVPRKEDQTPLNPASQPQAPPKPIPSFKVLEARDIQEQPEDRKTWLSQRSKLRQELESFG 120
           M  R+    P +P S P  P  P+    V+  + +  + +     + Q+  L        
Sbjct: 421 MQSRENIWVPADPVSPPSLPSVPLLESLVMGPQGVLSESKALWETMGQKENL-------- 472

Query: 121 DVKRWLENKPSITPSEAKVLHMIHEEQSAQPNASQATTRTTRKKAPRLSRLSRQMVPQLQ 180
               W  + P    S      M  E     P    AT+  T K        S    P L 
Sbjct: 473 ----WASDSPDPVHSTPPTTLM--EPHRINPGECLATSEATWKDTEHSRNSSASRSPSLA 526

Query: 181 LPEPPALS 188
           L  PPAL+
Sbjct: 527 LSPPPALA 534


>gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens]
          Length = 1079

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 29/128 (22%), Positives = 42/128 (32%), Gaps = 14/128 (10%)

Query: 61  MVPRKEDQTPLNPASQPQAPPKPIPSFKVLEARDIQEQPEDRKTWLSQRSKLRQELESFG 120
           M  R+    P +P S P  P  P+    V+  + +  + +     + Q+  L        
Sbjct: 456 MQSRENIWVPADPVSPPSLPSVPLLESLVMGPQGVLSESKALWETMGQKENL-------- 507

Query: 121 DVKRWLENKPSITPSEAKVLHMIHEEQSAQPNASQATTRTTRKKAPRLSRLSRQMVPQLQ 180
               W  + P    S      M  E     P    AT+  T K        S    P L 
Sbjct: 508 ----WASDSPDPVHSTPPTTLM--EPHRINPGECLATSEATWKDTEHSRNSSASRSPSLA 561

Query: 181 LPEPPALS 188
           L  PPAL+
Sbjct: 562 LSPPPALA 569


>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
           sapiens]
          Length = 1188

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 274 LATAREHYILAKHRDSLKGPLKKQEVDSAPQLP-KVDLLTVPAVDTQMETRPMTLEEMEE 332
           L  +R       HR       + +E    P+LP K  LL++PA DT     P  + E   
Sbjct: 478 LCGSRREDRFLSHRPGPTVAPQSKEGKKGPRLPEKETLLSLPAKDT-----PPGVPEKSL 532

Query: 333 VGKRYRERQRQHKLTIPSIQYTEQ 356
            G    E +    LT+PS+ Y  Q
Sbjct: 533 GGSSLTETEAAPSLTLPSVDYIPQ 556


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,002,067
Number of Sequences: 37866
Number of extensions: 1183095
Number of successful extensions: 4890
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 4790
Number of HSP's gapped (non-prelim): 166
length of query: 572
length of database: 18,247,518
effective HSP length: 108
effective length of query: 464
effective length of database: 14,157,990
effective search space: 6569307360
effective search space used: 6569307360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.