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Search of human proteins with 46094062
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|46094062 nerve growth factor receptor (TNFRSF16) associated
protein 1 isoform a [Homo sapiens]
(101 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46094062 nerve growth factor receptor (TNFRSF16) associated p... 218 6e-58
gi|46094060 nerve growth factor receptor (TNFRSF16) associated p... 218 6e-58
gi|7657044 nerve growth factor receptor (TNFRSF16) associated pr... 218 6e-58
gi|228008288 brain expressed, X-linked 5 [Homo sapiens] 110 2e-25
gi|61175244 brain expressed, X-linked 5 [Homo sapiens] 110 2e-25
gi|189095254 BEX family member 4 [Homo sapiens] 101 1e-22
gi|122937245 BEX family member 4 [Homo sapiens] 101 1e-22
gi|68533249 brain expressed, X-linked 1 [Homo sapiens] 64 2e-11
gi|14249132 brain expressed X-linked 2 [Homo sapiens] 62 7e-11
gi|23397409 transcription elongation factor A (SII)-like 7 [Homo... 41 2e-04
gi|239757005 PREDICTED: hypothetical protein [Homo sapiens] 29 0.91
gi|239751519 PREDICTED: hypothetical protein [Homo sapiens] 29 0.91
gi|239746026 PREDICTED: hypothetical protein XP_002344173 [Homo ... 29 0.91
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens] 28 1.6
gi|55749424 transcription elongation factor A (SII)-like 1 [Homo... 28 2.0
gi|55749406 transcription elongation factor A (SII)-like 1 [Homo... 28 2.0
gi|55749397 transcription elongation factor A (SII)-like 1 [Homo... 28 2.0
gi|116875834 zinc finger protein 74 [Homo sapiens] 27 2.7
gi|133922562 phosphoglucomutase 5 [Homo sapiens] 27 2.7
gi|222144283 hypothetical protein LOC65998 [Homo sapiens] 27 3.5
gi|224591401 phosphatidylinositol 4-kinase type 2 beta [Homo sap... 27 4.5
gi|38788416 laminin, alpha 1 precursor [Homo sapiens] 27 4.5
gi|120953264 folliculin interacting protein 1 isoform 2 [Homo sa... 27 4.5
gi|120953291 folliculin interacting protein 1 isoform 1 [Homo sa... 27 4.5
gi|154091020 leucine-rich repeats and calponin homology (CH) dom... 27 4.5
gi|117553613 coiled-coil domain containing 151 [Homo sapiens] 27 4.5
gi|27436971 potassium voltage-gated channel, shaker-related subf... 26 5.9
gi|169166639 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|113416043 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|113415531 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
>gi|46094062 nerve growth factor receptor (TNFRSF16) associated
protein 1 isoform a [Homo sapiens]
Length = 101
Score = 218 bits (556), Expect = 6e-58
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIF 60
MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIF
Sbjct: 1 MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIF 60
Query: 61 MEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 101
MEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP
Sbjct: 61 MEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 101
>gi|46094060 nerve growth factor receptor (TNFRSF16) associated
protein 1 isoform b [Homo sapiens]
Length = 111
Score = 218 bits (556), Expect = 6e-58
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIF 60
MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIF
Sbjct: 11 MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIF 70
Query: 61 MEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 101
MEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP
Sbjct: 71 MEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 111
>gi|7657044 nerve growth factor receptor (TNFRSF16) associated
protein 1 isoform b [Homo sapiens]
Length = 111
Score = 218 bits (556), Expect = 6e-58
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIF 60
MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIF
Sbjct: 11 MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIF 70
Query: 61 MEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 101
MEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP
Sbjct: 71 MEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 111
>gi|228008288 brain expressed, X-linked 5 [Homo sapiens]
Length = 111
Score = 110 bits (276), Expect = 2e-25
Identities = 60/100 (60%), Positives = 71/100 (71%), Gaps = 5/100 (5%)
Query: 4 PMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQIN--DGMGGDGDDMEIFM 61
P+QN E LGGGE +P GN +G AP F +PNR ++ D + GDGDDME FM
Sbjct: 15 PVQN--EAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNIDMIDGDGDDMERFM 72
Query: 62 EEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 101
EEMRE+RRK+RELQLR LRIL+G+ HHDHHDEFCLMP
Sbjct: 73 EEMRELRRKIRELQLRYSLRILIGD-PPHHDHHDEFCLMP 111
>gi|61175244 brain expressed, X-linked 5 [Homo sapiens]
Length = 111
Score = 110 bits (276), Expect = 2e-25
Identities = 60/100 (60%), Positives = 71/100 (71%), Gaps = 5/100 (5%)
Query: 4 PMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQIN--DGMGGDGDDMEIFM 61
P+QN E LGGGE +P GN +G AP F +PNR ++ D + GDGDDME FM
Sbjct: 15 PVQN--EAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNIDMIDGDGDDMERFM 72
Query: 62 EEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 101
EEMRE+RRK+RELQLR LRIL+G+ HHDHHDEFCLMP
Sbjct: 73 EEMRELRRKIRELQLRYSLRILIGD-PPHHDHHDEFCLMP 111
>gi|189095254 BEX family member 4 [Homo sapiens]
Length = 120
Score = 101 bits (251), Expect = 1e-22
Identities = 54/101 (53%), Positives = 66/101 (65%), Gaps = 7/101 (6%)
Query: 2 EQPMQNGEEDRPLGGGEGHQPAGN-RRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIF 60
+ P QN EE R LGGGEG +P GN RRG+ RRL PNFRWAIPNR I DD+E F
Sbjct: 26 QAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEA--RDDVERF 83
Query: 61 MEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 101
+ +M EI+RK RE Q+R+ +R E NH+D FCL+P
Sbjct: 84 VGQMMEIKRKTREQQMRHYMRFQTPEPDNHYD----FCLIP 120
>gi|122937245 BEX family member 4 [Homo sapiens]
Length = 120
Score = 101 bits (251), Expect = 1e-22
Identities = 54/101 (53%), Positives = 66/101 (65%), Gaps = 7/101 (6%)
Query: 2 EQPMQNGEEDRPLGGGEGHQPAGN-RRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIF 60
+ P QN EE R LGGGEG +P GN RRG+ RRL PNFRWAIPNR I DD+E F
Sbjct: 26 QAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEA--RDDVERF 83
Query: 61 MEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 101
+ +M EI+RK RE Q+R+ +R E NH+D FCL+P
Sbjct: 84 VGQMMEIKRKTREQQMRHYMRFQTPEPDNHYD----FCLIP 120
>gi|68533249 brain expressed, X-linked 1 [Homo sapiens]
Length = 125
Score = 64.3 bits (155), Expect = 2e-11
Identities = 42/102 (41%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 2 EQPMQNGEE-DRPLGGGEGHQPAGNRRG-QARRLAPNFRWAIPNRQINDGMGGDGDDMEI 59
EQ GE PL GE P GNRR + R+ +RW + +R ++ME
Sbjct: 25 EQVANKGEPLALPLDAGEYCVPRGNRRRFRVRQPILQYRWDMMHRLGEPQARMREENMER 84
Query: 60 FMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 101
EE+R++ KLRE QL + LR + + HHDHHDEFCLMP
Sbjct: 85 IGEEVRQLMEKLREKQLSHSLRAVSTD-PPHHDHHDEFCLMP 125
>gi|14249132 brain expressed X-linked 2 [Homo sapiens]
Length = 128
Score = 62.4 bits (150), Expect = 7e-11
Identities = 42/102 (41%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 2 EQPMQNGEE-DRPLGGGEGHQPAGNRRG-QARRLAPNFRWAIPNRQINDGMGGDGDDMEI 59
EQ GE PL E P GNRR + R+ +RW I +R ++ME
Sbjct: 28 EQVANKGEPLALPLNVSEYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQARMREENMER 87
Query: 60 FMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 101
EE+R++ KLRE QL + LR + + HHDHHDEFCLMP
Sbjct: 88 IGEEVRQLMEKLREKQLSHSLRAVSTD-PPHHDHHDEFCLMP 128
>gi|23397409 transcription elongation factor A (SII)-like 7 [Homo
sapiens]
Length = 100
Score = 41.2 bits (95), Expect = 2e-04
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 9 EEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDG-MGGDGDDMEIFMEEMREI 67
EE RP G E Q GN R + + F+ I R D M +GD+ME +EE+R +
Sbjct: 20 EEKRPYGEFERQQTEGNFRQRLLQSLEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGL 79
Query: 68 RRKLREL 74
R+K R L
Sbjct: 80 RKKFRAL 86
>gi|239757005 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 28.9 bits (63), Expect = 0.91
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 12 RPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDG 54
RPLG H P G+ +AP R ++ + G GG G
Sbjct: 97 RPLGASAAHLPGSRAGGRYLGVAPGRRRSLLPSAVQPGRGGHG 139
>gi|239751519 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 28.9 bits (63), Expect = 0.91
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 12 RPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDG 54
RPLG H P G+ +AP R ++ + G GG G
Sbjct: 97 RPLGASAAHLPGSRAGGRYLGVAPGRRRSLLPSAVQPGRGGHG 139
>gi|239746026 PREDICTED: hypothetical protein XP_002344173 [Homo
sapiens]
Length = 183
Score = 28.9 bits (63), Expect = 0.91
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 12 RPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDG 54
RPLG H P G+ +AP R ++ + G GG G
Sbjct: 97 RPLGASAAHLPGSRAGGRYLGVAPGRRRSLLPSAVQPGRGGHG 139
>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
Length = 1374
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 12 RPLGGGEGHQP--AGNRRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIFMEEMR 65
RP GGG G P AG G LA + + + DG DGDD+ E R
Sbjct: 418 RPGGGGVGPGPGAAGPMLGGVVELAAASSFPLLEQFAGDGFHADGDDVLTVTETSR 473
>gi|55749424 transcription elongation factor A (SII)-like 1 [Homo
sapiens]
Length = 159
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 10 EDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQI-NDGMGGDGDDMEIFMEEMREIR 68
E P G G+ G+ + + R P FR I R + N+ M D+ +EEM+ +R
Sbjct: 86 EQPPCGVGKHKLEEGSFKERLARSRPQFRGDIHGRNLSNEEMIQAADE----LEEMKRVR 141
Query: 69 RKL 71
KL
Sbjct: 142 NKL 144
>gi|55749406 transcription elongation factor A (SII)-like 1 [Homo
sapiens]
Length = 159
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 10 EDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQI-NDGMGGDGDDMEIFMEEMREIR 68
E P G G+ G+ + + R P FR I R + N+ M D+ +EEM+ +R
Sbjct: 86 EQPPCGVGKHKLEEGSFKERLARSRPQFRGDIHGRNLSNEEMIQAADE----LEEMKRVR 141
Query: 69 RKL 71
KL
Sbjct: 142 NKL 144
>gi|55749397 transcription elongation factor A (SII)-like 1 [Homo
sapiens]
Length = 159
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 10 EDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQI-NDGMGGDGDDMEIFMEEMREIR 68
E P G G+ G+ + + R P FR I R + N+ M D+ +EEM+ +R
Sbjct: 86 EQPPCGVGKHKLEEGSFKERLARSRPQFRGDIHGRNLSNEEMIQAADE----LEEMKRVR 141
Query: 69 RKL 71
KL
Sbjct: 142 NKL 144
>gi|116875834 zinc finger protein 74 [Homo sapiens]
Length = 644
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 2 EQPMQNGEEDRPLGGGE--GHQPAGNRRGQAR--RLAPNFRWAIP 42
E+P Q +RPLGG + G Q +R QA AP W +P
Sbjct: 131 EEPAQEPIMERPLGGAQAWGRQAGALQRSQAAPWAPAPAMVWDVP 175
>gi|133922562 phosphoglucomutase 5 [Homo sapiens]
Length = 567
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 9 EEDRPLGGGEGHQPAGNRRGQARRLAPNF 37
E+ RP GGG +P G GQ R PNF
Sbjct: 17 EDQRPAGGGGLRRPTGLFEGQ-RNYLPNF 44
>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
Length = 678
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 9 EEDRPLGGGEGHQ---PAGNRRGQARRLAPNFRWAIPNRQINDG 49
EE+ L GEG + P + RG+A R P RW + DG
Sbjct: 389 EEEEELEEGEGERAGVPGRSPRGRAHRRHPQERWRLEYLMELDG 432
>gi|224591401 phosphatidylinositol 4-kinase type 2 beta [Homo
sapiens]
Length = 481
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 5 MQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR-------QINDGMGGDGD 55
M++ E L +G P G+ L P WA P R ++ D G +G+
Sbjct: 1 MEDPSEPDRLASADGGSPEEEEDGEREPLLPRIAWAHPRRGAPGSAVRLLDAAGEEGE 58
>gi|38788416 laminin, alpha 1 precursor [Homo sapiens]
Length = 3075
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 17 GEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDG 54
G HQ + N +RLAP + WA P + + + G
Sbjct: 547 GGRHQVSINNTAVMQRLAPKYYWAAPEAYLGNKLTAFG 584
>gi|120953264 folliculin interacting protein 1 isoform 2 [Homo
sapiens]
Length = 1138
Score = 26.6 bits (57), Expect = 4.5
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 22 PAGNRRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIFMEEMREI 67
P G++ +++A W IP + +D GD + + + R++
Sbjct: 886 PHGDKESSDKKIAVGTEWDIPRNESSDSALGDSESEDTGHDMTRQV 931
>gi|120953291 folliculin interacting protein 1 isoform 1 [Homo
sapiens]
Length = 1166
Score = 26.6 bits (57), Expect = 4.5
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 22 PAGNRRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIFMEEMREI 67
P G++ +++A W IP + +D GD + + + R++
Sbjct: 914 PHGDKESSDKKIAVGTEWDIPRNESSDSALGDSESEDTGHDMTRQV 959
>gi|154091020 leucine-rich repeats and calponin homology (CH) domain
containing 2 [Homo sapiens]
Length = 765
Score = 26.6 bits (57), Expect = 4.5
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 2 EQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIFM 61
+ P+ + E DR G H P G L P ++ +RQ G G M M
Sbjct: 591 QSPVSSEEYDRT--DGFSHSPFG--------LKPRSAFSRSSRQ-EYGAADPGFTMRRKM 639
Query: 62 EEMREIRRKLRELQ--LRNCLRILM 84
E +RE R ++R+L+ L + L++++
Sbjct: 640 EHLREEREQIRQLRNNLESRLKVIL 664
>gi|117553613 coiled-coil domain containing 151 [Homo sapiens]
Length = 595
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 68 RRKLRELQLRNCLRIL-MGELSNHH 91
+R+L ELQL++ LR+L M E N H
Sbjct: 175 QRRLEELQLQHSLRLLEMAEAQNRH 199
>gi|27436971 potassium voltage-gated channel, shaker-related
subfamily, beta member 3 [Homo sapiens]
Length = 404
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 3 QPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA 34
+P G P GGG G+ P G G R A
Sbjct: 25 RPGPGGGNGGPAGGGHGNPPGGGGSGPKARAA 56
>gi|169166639 PREDICTED: hypothetical protein [Homo sapiens]
Length = 171
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 8 GEEDRPLGGGEGHQPA------GNRRGQARRLAPNFRWA 40
GE DRP+G G G Q RGQAR + WA
Sbjct: 28 GEMDRPVGVGVGWQTVVGSIGRARARGQARAGGRDGSWA 66
>gi|113416043 PREDICTED: hypothetical protein [Homo sapiens]
Length = 171
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 8 GEEDRPLGGGEGHQPA------GNRRGQARRLAPNFRWA 40
GE DRP+G G G Q RGQAR + WA
Sbjct: 28 GEMDRPVGVGVGWQTVVGSIGRARARGQARAGGRDGSWA 66
>gi|113415531 PREDICTED: hypothetical protein [Homo sapiens]
Length = 171
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 8 GEEDRPLGGGEGHQPA------GNRRGQARRLAPNFRWA 40
GE DRP+G G G Q RGQAR + WA
Sbjct: 28 GEMDRPVGVGVGWQTVVGSIGRARARGQARAGGRDGSWA 66
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.141 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,647,154
Number of Sequences: 37866
Number of extensions: 214177
Number of successful extensions: 697
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 33
length of query: 101
length of database: 18,247,518
effective HSP length: 72
effective length of query: 29
effective length of database: 15,521,166
effective search space: 450113814
effective search space used: 450113814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.