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Search of human proteins with 45935393
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|45935393 RNA binding motif protein 35B [Homo sapiens]
(717 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|45935393 RNA binding motif protein 35B [Homo sapiens] 1446 0.0
gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens] 815 0.0
gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens] 800 0.0
gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens] 785 0.0
gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens] 755 0.0
gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens] 740 0.0
gi|149193321 G-rich RNA sequence binding factor 1 isoform 1 [Hom... 135 1e-31
gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo sap... 117 3e-26
gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo sapi... 117 3e-26
gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo sapi... 116 8e-26
gi|149193319 G-rich RNA sequence binding factor 1 isoform 2 [Hom... 112 9e-25
gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo sap... 109 8e-24
gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo sap... 109 8e-24
gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo sap... 109 8e-24
gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo sap... 109 8e-24
gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo sap... 109 8e-24
gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens] 109 8e-24
gi|19923345 RNA binding motif protein 12 [Homo sapiens] 93 1e-18
gi|23510462 RNA binding motif protein 12 [Homo sapiens] 93 1e-18
gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a... 74 6e-13
gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b... 74 6e-13
gi|118722349 RNA binding motif protein 12B [Homo sapiens] 74 6e-13
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 59 2e-08
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 59 2e-08
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 59 2e-08
gi|239751395 PREDICTED: hypothetical protein, partial [Homo sapi... 47 8e-05
gi|239745904 PREDICTED: hypothetical protein, partial [Homo sapi... 47 8e-05
gi|169211436 PREDICTED: hypothetical protein [Homo sapiens] 46 1e-04
gi|116284392 mucin 2 precursor [Homo sapiens] 45 2e-04
gi|39812378 RAN binding protein 9 [Homo sapiens] 42 0.002
>gi|45935393 RNA binding motif protein 35B [Homo sapiens]
Length = 717
Score = 1446 bits (3742), Expect = 0.0
Identities = 717/717 (100%), Positives = 717/717 (100%)
Query: 1 MTPPPPPPPPPGPDPAADPAADPCPWPGSLVVLFGATAGALGRDLGSDETDLILLVWQVV 60
MTPPPPPPPPPGPDPAADPAADPCPWPGSLVVLFGATAGALGRDLGSDETDLILLVWQVV
Sbjct: 1 MTPPPPPPPPPGPDPAADPAADPCPWPGSLVVLFGATAGALGRDLGSDETDLILLVWQVV 60
Query: 61 EPRSRQVGTLHKSLVRAEAAALSTQCREASGLSADSLARAEPLDKVLQQFSQLVNGDVAL 120
EPRSRQVGTLHKSLVRAEAAALSTQCREASGLSADSLARAEPLDKVLQQFSQLVNGDVAL
Sbjct: 61 EPRSRQVGTLHKSLVRAEAAALSTQCREASGLSADSLARAEPLDKVLQQFSQLVNGDVAL 120
Query: 121 LGGGPYMLCTDGQQLLRQVLHPEASRKNLVLPDMFFSFYDLRREFHMQHPSTCPARDLTV 180
LGGGPYMLCTDGQQLLRQVLHPEASRKNLVLPDMFFSFYDLRREFHMQHPSTCPARDLTV
Sbjct: 121 LGGGPYMLCTDGQQLLRQVLHPEASRKNLVLPDMFFSFYDLRREFHMQHPSTCPARDLTV 180
Query: 181 ATMAQGLGLETDATEDDFGVWEVKTMVAVILHLLKEPSSQLFSKPEVIKQKYETGPCSKA 240
ATMAQGLGLETDATEDDFGVWEVKTMVAVILHLLKEPSSQLFSKPEVIKQKYETGPCSKA
Sbjct: 181 ATMAQGLGLETDATEDDFGVWEVKTMVAVILHLLKEPSSQLFSKPEVIKQKYETGPCSKA 240
Query: 241 DVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQ 300
DVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQ
Sbjct: 241 DVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQ 300
Query: 301 RDLALQRHKHHMGVRYIEVYKATGEEFVKIAGGTSLEVARFLSREDQVILRLRGLPFSAG 360
RDLALQRHKHHMGVRYIEVYKATGEEFVKIAGGTSLEVARFLSREDQVILRLRGLPFSAG
Sbjct: 301 RDLALQRHKHHMGVRYIEVYKATGEEFVKIAGGTSLEVARFLSREDQVILRLRGLPFSAG 360
Query: 361 PTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRY 420
PTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRY
Sbjct: 361 PTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRY 420
Query: 421 IELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDCVRLRGLPYTATIED 480
IELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDCVRLRGLPYTATIED
Sbjct: 421 IELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDCVRLRGLPYTATIED 480
Query: 481 ILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEV 540
ILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEV
Sbjct: 481 ILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEV 540
Query: 541 VPCSTEEMSRVLMGGTLGRSGMSPPPCKLPCLSPPTYTTFQATPTLIPTETAALYPSSAL 600
VPCSTEEMSRVLMGGTLGRSGMSPPPCKLPCLSPPTYTTFQATPTLIPTETAALYPSSAL
Sbjct: 541 VPCSTEEMSRVLMGGTLGRSGMSPPPCKLPCLSPPTYTTFQATPTLIPTETAALYPSSAL 600
Query: 601 LPAARVPAAPTPVAYYPGPATQLYLNYTAYYPSPPVSPTTVGYLTTPTAALASAPTSVLS 660
LPAARVPAAPTPVAYYPGPATQLYLNYTAYYPSPPVSPTTVGYLTTPTAALASAPTSVLS
Sbjct: 601 LPAARVPAAPTPVAYYPGPATQLYLNYTAYYPSPPVSPTTVGYLTTPTAALASAPTSVLS 660
Query: 661 QSGALVRMQGVPYTAGMKDLLSVFQAYQLPADDYTSLMPVGDPPRTVLQAPKEWVCL 717
QSGALVRMQGVPYTAGMKDLLSVFQAYQLPADDYTSLMPVGDPPRTVLQAPKEWVCL
Sbjct: 661 QSGALVRMQGVPYTAGMKDLLSVFQAYQLPADDYTSLMPVGDPPRTVLQAPKEWVCL 717
>gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens]
Length = 681
Score = 815 bits (2106), Expect = 0.0
Identities = 418/693 (60%), Positives = 515/693 (74%), Gaps = 18/693 (2%)
Query: 27 PGSLVVLFGATAGALGRDLGSDETDLILLVWQVVEPRSRQVGTLHKSLVRAEAAALSTQC 86
P LVVLFG TAGA G LGSDE +LILL W+VV+ +++VG LH+ LVR + L+ C
Sbjct: 5 PDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLELTEDC 64
Query: 87 REASGLSADSLARAEPLDKVLQQFSQLVNGDVALLGGGPYMLCTDGQQLLRQVLHPEASR 146
+E + + +SL+ A LD+ L+QF+Q V+ ++ + G + LCTDGQ +RQ+LHPEAS+
Sbjct: 65 KEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHPEASK 124
Query: 147 KNLVLPDMFFSFYDLRREFHMQHPSTCPARDLTVATMAQGLGLETDATEDDFGVWEVKTM 206
KN++LP+ F+SF+DLR+EF P + L VATM + L E ++ +G +V+ M
Sbjct: 125 KNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQVEDM 184
Query: 207 VAVILHLLKEPSSQLFSKPEVIKQKYETGPCSKADVVDSETVVRARGLPWQSSDQDVARF 266
+IL ++ EP + FS PE + K+E+G CSK +++D TVVRARGLPWQSSDQD+ARF
Sbjct: 185 GNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARF 244
Query: 267 FKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEE 326
FKGLN+A+GG ALCLNAQGRRNGEAL+RFV E RDLALQRHKHHMG RYIEVYKATGE+
Sbjct: 245 FKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED 304
Query: 327 FVKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRH 386
F+KIAGGTS EVA+FLS+E+QVI+R+RGLPF+A +V+ F G CP+TGG EG+LFV +
Sbjct: 305 FLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY 364
Query: 387 PDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPT 446
PDGRPTGDAF LFACEE AQ ALR+HK +LGKRYIELFRSTAAEVQQVLNR++S PL+P
Sbjct: 365 PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPL 424
Query: 447 LTAPLLPI-PFPLAPGTG-RDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQ 504
T P++P+ P P T RDC+RLRGLPY ATIEDIL FLGE A DIR HGVHMVLN Q
Sbjct: 425 PTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ 484
Query: 505 GRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMSP 564
GRPSGDAFIQM SA+RA AAQ+CHKK MK+RYVEV CS EEM+ VLMGGTL R+G+SP
Sbjct: 485 GRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 544
Query: 565 PPCKLPCLSPPTYTTFQATPTLIPTETAALYPSSALLPAARVPAAPTPVAYYPGPATQLY 624
PPCKLPCLSPP+Y TF A +IPTE A PS L P A P+ AYYP TQL+
Sbjct: 545 PPCKLPCLSPPSY-TFPAPAAVIPTEAAIYQPSVILNPRALQPS----TAYYPA-GTQLF 598
Query: 625 LNYTAYYPSPPVSPTTVGYLTTPTAALASAPTSVLSQSGALVRMQGVPYTAGMKDLLSVF 684
+NYTAYYPSPP SP ++GY PTAA S V Q G +VRMQG+ Y G+K++L+ F
Sbjct: 599 MNYTAYYPSPPGSPNSLGYF--PTAANLS---GVPPQPGTVVRMQGLAYNTGVKEILNFF 653
Query: 685 QAYQLPADDYTSLMPVGDPPRTVLQAPKEWVCL 717
Q YQ +D L+ D RT+ PKEWVC+
Sbjct: 654 QGYQYATED--GLIHTNDQARTL---PKEWVCI 681
>gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens]
Length = 677
Score = 800 bits (2066), Expect = 0.0
Identities = 414/693 (59%), Positives = 511/693 (73%), Gaps = 22/693 (3%)
Query: 27 PGSLVVLFGATAGALGRDLGSDETDLILLVWQVVEPRSRQVGTLHKSLVRAEAAALSTQC 86
P LVVLFG TAGA G LGSDE +LILL W+VV+ +++VG LH+ LVR + L+ C
Sbjct: 5 PDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLELTEDC 64
Query: 87 REASGLSADSLARAEPLDKVLQQFSQLVNGDVALLGGGPYMLCTDGQQLLRQVLHPEASR 146
+E + + +SL+ A LD+ L+QF+Q V+ ++ + G + LCTDGQ +RQ+LHPEAS+
Sbjct: 65 KEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHPEASK 124
Query: 147 KNLVLPDMFFSFYDLRREFHMQHPSTCPARDLTVATMAQGLGLETDATEDDFGVWEVKTM 206
KN++LP+ F+SF+DLR+EF P + L VATM + L E ++ +G +V+ M
Sbjct: 125 KNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQVEDM 184
Query: 207 VAVILHLLKEPSSQLFSKPEVIKQKYETGPCSKADVVDSETVVRARGLPWQSSDQDVARF 266
+IL ++ EP + FS PE + K+E+G CSK +++D TVVRARGLPWQSSDQD+ARF
Sbjct: 185 GNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARF 244
Query: 267 FKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEE 326
FKGLN+A+GG ALCLNAQGRRNGEAL+RFV E RDLALQRHKHHMG RYIEVYKATGE+
Sbjct: 245 FKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED 304
Query: 327 FVKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRH 386
F+KIAGGTS EVA+FLS+E+QVI+R+RGLPF+A +V+ F G CP+TGG EG+LFV +
Sbjct: 305 FLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY 364
Query: 387 PDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPT 446
PDGRPTGDAF LFACEE AQ ALR+HK +LGKRYIELFRSTAAEVQQVLNR++S PL+P
Sbjct: 365 PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPL 424
Query: 447 LTAPLLPI-PFPLAPGTG-RDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQ 504
T P++P+ P P T RDC+RLRGLPY ATIEDIL FLGE A DIR HGVHMVLN Q
Sbjct: 425 PTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ 484
Query: 505 GRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMSP 564
GRPSGDAFIQM SA+RA AAQ+CHKK MK+RYVEV CS EEM+ VLMGGTL R+G+SP
Sbjct: 485 GRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 544
Query: 565 PPCKLPCLSPPTYTTFQATPTLIPTETAALYPSSALLPAARVPAAPTPVAYYPGPATQLY 624
P PCLSPP+Y TF A +IPTE A PS L P A P+ AYYP TQL+
Sbjct: 545 P----PCLSPPSY-TFPAPAAVIPTEAAIYQPSVILNPRALQPS----TAYYPA-GTQLF 594
Query: 625 LNYTAYYPSPPVSPTTVGYLTTPTAALASAPTSVLSQSGALVRMQGVPYTAGMKDLLSVF 684
+NYTAYYPSPP SP ++GY PTAA S V Q G +VRMQG+ Y G+K++L+ F
Sbjct: 595 MNYTAYYPSPPGSPNSLGYF--PTAANLS---GVPPQPGTVVRMQGLAYNTGVKEILNFF 649
Query: 685 QAYQLPADDYTSLMPVGDPPRTVLQAPKEWVCL 717
Q YQ +D L+ D RT+ PKEWVC+
Sbjct: 650 QGYQYATED--GLIHTNDQARTL---PKEWVCI 677
>gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens]
Length = 659
Score = 785 bits (2027), Expect = 0.0
Identities = 404/668 (60%), Positives = 497/668 (74%), Gaps = 17/668 (2%)
Query: 27 PGSLVVLFGATAGALGRDLGSDETDLILLVWQVVEPRSRQVGTLHKSLVRAEAAALSTQC 86
P LVVLFG TAGA G LGSDE +LILL W+VV+ +++VG LH+ LVR + L+ C
Sbjct: 5 PDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLELTEDC 64
Query: 87 REASGLSADSLARAEPLDKVLQQFSQLVNGDVALLGGGPYMLCTDGQQLLRQVLHPEASR 146
+E + + +SL+ A LD+ L+QF+Q V+ ++ + G + LCTDGQ +RQ+LHPEAS+
Sbjct: 65 KEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHPEASK 124
Query: 147 KNLVLPDMFFSFYDLRREFHMQHPSTCPARDLTVATMAQGLGLETDATEDDFGVWEVKTM 206
KN++LP+ F+SF+DLR+EF P + L VATM + L E ++ +G +V+ M
Sbjct: 125 KNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQVEDM 184
Query: 207 VAVILHLLKEPSSQLFSKPEVIKQKYETGPCSKADVVDSETVVRARGLPWQSSDQDVARF 266
+IL ++ EP + FS PE + K+E+G CSK +++D TVVRARGLPWQSSDQD+ARF
Sbjct: 185 GNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARF 244
Query: 267 FKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEE 326
FKGLN+A+GG ALCLNAQGRRNGEAL+RFV E RDLALQRHKHHMG RYIEVYKATGE+
Sbjct: 245 FKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED 304
Query: 327 FVKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRH 386
F+KIAGGTS EVA+FLS+E+QVI+R+RGLPF+A +V+ F G CP+TGG EG+LFV +
Sbjct: 305 FLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY 364
Query: 387 PDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPT 446
PDGRPTGDAF LFACEE AQ ALR+HK +LGKRYIELFRSTAAEVQQVLNR++S PL+P
Sbjct: 365 PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPL 424
Query: 447 LTAPLLPI-PFPLAPGTG-RDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQ 504
T P++P+ P P T RDC+RLRGLPY ATIEDIL FLGE A DIR HGVHMVLN Q
Sbjct: 425 PTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ 484
Query: 505 GRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMSP 564
GRPSGDAFIQM SA+RA AAQ+CHKK MK+RYVEV CS EEM+ VLMGGTL R+G+SP
Sbjct: 485 GRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 544
Query: 565 PPCKLPCLSPPTYTTFQATPTLIPTETAALYPSSALLPAARVPAAPTPVAYYPGPATQLY 624
P PCLSPP+Y TF A +IPTE A PS L P A P+ AYYP TQL+
Sbjct: 545 P----PCLSPPSY-TFPAPAAVIPTEAAIYQPSVILNPRALQPS----TAYYPA-GTQLF 594
Query: 625 LNYTAYYPSPPVSPTTVGYLTTPTAALASAPTSVLSQSGALVRMQGVPYTAGMKDLLSVF 684
+NYTAYYPSPP SP ++GY PTAA S V Q G +VRMQG+ Y G+K++L+ F
Sbjct: 595 MNYTAYYPSPPGSPNSLGYF--PTAANLS---GVPPQPGTVVRMQGLAYNTGVKEILNFF 649
Query: 685 QAYQLPAD 692
Q YQ D
Sbjct: 650 QGYQCLKD 657
>gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens]
Length = 608
Score = 755 bits (1950), Expect = 0.0
Identities = 380/609 (62%), Positives = 465/609 (76%), Gaps = 8/609 (1%)
Query: 27 PGSLVVLFGATAGALGRDLGSDETDLILLVWQVVEPRSRQVGTLHKSLVRAEAAALSTQC 86
P LVVLFG TAGA G LGSDE +LILL W+VV+ +++VG LH+ LVR + L+ C
Sbjct: 5 PDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLELTEDC 64
Query: 87 REASGLSADSLARAEPLDKVLQQFSQLVNGDVALLGGGPYMLCTDGQQLLRQVLHPEASR 146
+E + + +SL+ A LD+ L+QF+Q V+ ++ + G + LCTDGQ +RQ+LHPEAS+
Sbjct: 65 KEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHPEASK 124
Query: 147 KNLVLPDMFFSFYDLRREFHMQHPSTCPARDLTVATMAQGLGLETDATEDDFGVWEVKTM 206
KN++LP+ F+SF+DLR+EF P + L VATM + L E ++ +G +V+ M
Sbjct: 125 KNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQVEDM 184
Query: 207 VAVILHLLKEPSSQLFSKPEVIKQKYETGPCSKADVVDSETVVRARGLPWQSSDQDVARF 266
+IL ++ EP + FS PE + K+E+G CSK +++D TVVRARGLPWQSSDQD+ARF
Sbjct: 185 GNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARF 244
Query: 267 FKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEE 326
FKGLN+A+GG ALCLNAQGRRNGEAL+RFV E RDLALQRHKHHMG RYIEVYKATGE+
Sbjct: 245 FKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED 304
Query: 327 FVKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRH 386
F+KIAGGTS EVA+FLS+E+QVI+R+RGLPF+A +V+ F G CP+TGG EG+LFV +
Sbjct: 305 FLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY 364
Query: 387 PDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPT 446
PDGRPTGDAF LFACEE AQ ALR+HK +LGKRYIELFRSTAAEVQQVLNR++S PL+P
Sbjct: 365 PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPL 424
Query: 447 LTAPLLPI-PFPLAPGTG-RDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQ 504
T P++P+ P P T RDC+RLRGLPY ATIEDIL FLGE A DIR HGVHMVLN Q
Sbjct: 425 PTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ 484
Query: 505 GRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMSP 564
GRPSGDAFIQM SA+RA AAQ+CHKK MK+RYVEV CS EEM+ VLMGGTL R+G+SP
Sbjct: 485 GRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 544
Query: 565 PPCKLPCLSPPTYTTFQATPTLIPTETAALYPSSALLPAARVPAAPTPVAYYPGPATQLY 624
PPCKLPCLSPP+Y TF A +IPTE A PS L P A P+ AYYP TQL+
Sbjct: 545 PPCKLPCLSPPSY-TFPAPAAVIPTEAAIYQPSVILNPRALQPS----TAYYPA-GTQLF 598
Query: 625 LNYTAYYPS 633
+NYTAYYPS
Sbjct: 599 MNYTAYYPS 607
>gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens]
Length = 604
Score = 740 bits (1910), Expect = 0.0
Identities = 376/609 (61%), Positives = 461/609 (75%), Gaps = 12/609 (1%)
Query: 27 PGSLVVLFGATAGALGRDLGSDETDLILLVWQVVEPRSRQVGTLHKSLVRAEAAALSTQC 86
P LVVLFG TAGA G LGSDE +LILL W+VV+ +++VG LH+ LVR + L+ C
Sbjct: 5 PDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLELTEDC 64
Query: 87 REASGLSADSLARAEPLDKVLQQFSQLVNGDVALLGGGPYMLCTDGQQLLRQVLHPEASR 146
+E + + +SL+ A LD+ L+QF+Q V+ ++ + G + LCTDGQ +RQ+LHPEAS+
Sbjct: 65 KEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHPEASK 124
Query: 147 KNLVLPDMFFSFYDLRREFHMQHPSTCPARDLTVATMAQGLGLETDATEDDFGVWEVKTM 206
KN++LP+ F+SF+DLR+EF P + L VATM + L E ++ +G +V+ M
Sbjct: 125 KNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQVEDM 184
Query: 207 VAVILHLLKEPSSQLFSKPEVIKQKYETGPCSKADVVDSETVVRARGLPWQSSDQDVARF 266
+IL ++ EP + FS PE + K+E+G CSK +++D TVVRARGLPWQSSDQD+ARF
Sbjct: 185 GNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARF 244
Query: 267 FKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEE 326
FKGLN+A+GG ALCLNAQGRRNGEAL+RFV E RDLALQRHKHHMG RYIEVYKATGE+
Sbjct: 245 FKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED 304
Query: 327 FVKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRH 386
F+KIAGGTS EVA+FLS+E+QVI+R+RGLPF+A +V+ F G CP+TGG EG+LFV +
Sbjct: 305 FLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY 364
Query: 387 PDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPT 446
PDGRPTGDAF LFACEE AQ ALR+HK +LGKRYIELFRSTAAEVQQVLNR++S PL+P
Sbjct: 365 PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPL 424
Query: 447 LTAPLLPI-PFPLAPGTG-RDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQ 504
T P++P+ P P T RDC+RLRGLPY ATIEDIL FLGE A DIR HGVHMVLN Q
Sbjct: 425 PTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ 484
Query: 505 GRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMSP 564
GRPSGDAFIQM SA+RA AAQ+CHKK MK+RYVEV CS EEM+ VLMGGTL R+G+SP
Sbjct: 485 GRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 544
Query: 565 PPCKLPCLSPPTYTTFQATPTLIPTETAALYPSSALLPAARVPAAPTPVAYYPGPATQLY 624
P PCLSPP+Y TF A +IPTE A PS L P A P+ AYYP TQL+
Sbjct: 545 P----PCLSPPSY-TFPAPAAVIPTEAAIYQPSVILNPRALQPS----TAYYPA-GTQLF 594
Query: 625 LNYTAYYPS 633
+NYTAYYPS
Sbjct: 595 MNYTAYYPS 603
>gi|149193321 G-rich RNA sequence binding factor 1 isoform 1 [Homo
sapiens]
Length = 480
Score = 135 bits (341), Expect = 1e-31
Identities = 106/351 (30%), Positives = 161/351 (45%), Gaps = 54/351 (15%)
Query: 231 KYETGPCSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARG--GVALCLNAQGRRN 288
+YE P + VD ++RA+GLPW + +DV FF + G G+ LN G+R
Sbjct: 134 EYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRR 193
Query: 289 GEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIAGGTSLEVARFLSREDQV 348
G+ALI + AL++H+ +MG RY+EVY+ E+ + SL+V D V
Sbjct: 194 GDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALM--KSLQVKSSPVVNDGV 251
Query: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGR-PTGDAFALFACEELAQA 407
+ RLRGLP+S D++ F V + FV GR TG+A+ F E+A
Sbjct: 252 V-RLRGLPYSCNEKDIVDFFAGLNIVD-----ITFVMDYRGRRKTGEAYVQFEEPEMANQ 305
Query: 408 ALRRHKGMLGKRYIELFRSTAAEVQQVLNRY-----ASGPLLPTLTAPLL---------- 452
AL +H+ +G RYIE+F S EV+ + Y AS P +T P +
Sbjct: 306 ALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNED 365
Query: 453 -------------------PIPFPLAPGTGRDC----VRLRGLPYTATIEDILSFLGEAA 489
P P A G V +RGLP+ A +DI++F
Sbjct: 366 IQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFF---- 421
Query: 490 ADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEV 540
A ++P + M + G+ +G+A + + E A+AA + V RY+E+
Sbjct: 422 APLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHV-HHRYIEL 471
Score = 91.3 bits (225), Expect = 3e-18
Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 24/225 (10%)
Query: 345 EDQVILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEEL 404
+D ++R +GLP+S DVL F +C + G G+ F+ + DG+ GDA E+
Sbjct: 147 DDVFLIRAQGLPWSCTMEDVLNFFS-DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQD 205
Query: 405 AQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGR 464
Q AL +H+ +G+RY+E++ +V ++ + +P
Sbjct: 206 VQKALEKHRMYMGQRYVEVYEINNEDVDALMKS----------------LQVKSSPVVND 249
Query: 465 DCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQG-RPSGDAFIQMTSAERALA 523
VRLRGLPY+ +DI+ F A + + V++ +G R +G+A++Q E A
Sbjct: 250 GVVRLRGLPYSCNEKDIVDFF----AGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQ 305
Query: 524 AAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMSPPPCK 568
A + H++ + RY+E+ P E+ R +G G+ S P K
Sbjct: 306 ALLK-HREEIGNRYIEIFPSRRNEV-RTHVGSYKGKKIASFPTAK 348
Score = 82.0 bits (201), Expect = 2e-15
Identities = 62/238 (26%), Positives = 101/238 (42%), Gaps = 59/238 (24%)
Query: 239 KADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRN-GEALIRFVD 297
K+ V ++ VVR RGLP+ +++D+ FF GLN+ + ++ +GRR GEA ++F +
Sbjct: 242 KSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEE 299
Query: 298 SEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIAGG------TSLEVARFLSREDQVI-- 349
E + AL +H+ +G RYIE++ + E G S A++++ + V
Sbjct: 300 PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEE 359
Query: 350 -------------------------------------------LRLRGLPFSAGPTDVLG 366
+ +RGLPF A D++
Sbjct: 360 HEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIIN 419
Query: 367 FLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELF 424
F P PV + G+ TG+A F E A AA+ + + + RYIELF
Sbjct: 420 FFAPLKPVR-----ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472
Score = 65.9 bits (159), Expect = 1e-10
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 21/204 (10%)
Query: 359 AGPTDVLGFLGPECPVTGGTEGLLFVRHPDGR---PTGDAFALFACEELAQAALRRHKGM 415
+G +L LG T GL P GR P A + A + ALR
Sbjct: 44 SGRRRLLLLLGAAAAAASQTRGLQTGPVPPGRLAGPPAVATSAAAAAAASYPALRA---- 99
Query: 416 LGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIP-FPLAPGTGRD------CVR 468
L + A V R S T L P P + LAP + +R
Sbjct: 100 ------SLLPQSLAAAAAVPTRSYSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIR 153
Query: 469 LRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRC 528
+GLP++ T+ED+L+F + +G+H +LN+ G+ GDA I+M S + A ++
Sbjct: 154 AQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEK- 212
Query: 529 HKKVMKERYVEVVPCSTEEMSRVL 552
H+ M +RYVEV + E++ ++
Sbjct: 213 HRMYMGQRYVEVYEINNEDVDALM 236
Score = 32.7 bits (73), Expect = 1.2
Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 565 PPCKLPCLSPPTYTTFQATPTLIPTETAALYPS--SALLPAARVPAAPTPVAYYPGPATQ 622
PP +L PP T A AA YP+ ++LLP + AA P Y +
Sbjct: 72 PPGRLA--GPPAVATSAAAAA------AASYPALRASLLPQSLAAAAAVPTRSYSQESKT 123
Query: 623 LYLNYTAYYPSPPVSPTTVGYLTTPTAALASAPTSVLSQSGALVRMQGVPYTAGMKDLLS 682
YL PP P LA + L+R QG+P++ M+D+L+
Sbjct: 124 TYLE-----DLPP----------PPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLN 168
Query: 683 VF 684
F
Sbjct: 169 FF 170
>gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo
sapiens]
Length = 449
Score = 117 bits (294), Expect = 3e-26
Identities = 72/191 (37%), Positives = 105/191 (54%), Gaps = 16/191 (8%)
Query: 248 VVRARGLPWQSSDQDVARFFKGLNVARG--GVALCLNAQGRRNGEALIRFVDSEQRDLAL 305
VV+ RGLPW S +V RFF + G G+ +GR +GEA + E+ LAL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 306 QRHKHHMGVRYIEVYKATGEEF---VKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPT 362
++ + MG RY+EV+K+ E +K G S + A + +RLRGLPF
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 125
Query: 363 DVLGFL-GPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYI 421
+++ F G E G T + F GR TG+AF FA +E+A+ AL++HK +G RYI
Sbjct: 126 EIVQFFSGLEIVPNGMTLPVDF----QGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181
Query: 422 ELFRSTAAEVQ 432
E+F+S+ AEV+
Sbjct: 182 EIFKSSRAEVR 192
Score = 112 bits (279), Expect = 2e-24
Identities = 66/201 (32%), Positives = 112/201 (55%), Gaps = 22/201 (10%)
Query: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
++++RGLP+S +V+ F +C + GT G+ F+ +GRP+G+AF EE + A
Sbjct: 12 VVKVRGLPWSCSADEVMRFFS-DCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLA 70
Query: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD-CV 467
L++ + +G RY+E+F+S + E+ VL P +P T D V
Sbjct: 71 LKKDRETMGHRYVEVFKSNSVEMDWVLKHTG-----------------PNSPDTANDGFV 113
Query: 468 RLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQR 527
RLRGLP+ + E+I+ F + +I P+G+ + ++ QGR +G+AF+Q S E A A ++
Sbjct: 114 RLRGLPFGCSKEEIVQFF--SGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK 171
Query: 528 CHKKVMKERYVEVVPCSTEEM 548
HK+ + RY+E+ S E+
Sbjct: 172 -HKERIGHRYIEIFKSSRAEV 191
Score = 73.6 bits (179), Expect = 6e-13
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 234 TGPCSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALI 293
TGP S D VR RGLP+ S +++ +FF GL + G+ L ++ QGR GEA +
Sbjct: 100 TGPNSPDTANDG--FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFV 157
Query: 294 RFVDSEQRDLALQRHKHHMGVRYIEVYKATGEE 326
+F E + AL++HK +G RYIE++K++ E
Sbjct: 158 QFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
Score = 58.5 bits (140), Expect = 2e-08
Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 467 VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQ 526
V++RGLP++ + ++++ F + G+ + ++GRPSG+AF+++ S E A +
Sbjct: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
Query: 527 RCHKKVMKERYVEVVPCSTEEMSRVL 552
+ ++ M RYVEV ++ EM VL
Sbjct: 73 K-DRETMGHRYVEVFKSNSVEMDWVL 97
Score = 53.1 bits (126), Expect = 9e-07
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 466 CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAA 525
CV +RGLPY AT DI +F + + P VH+ + GR +G+A ++ + E A+AA
Sbjct: 290 CVHMRGLPYRATENDIYNFF----SPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAM 345
Query: 526 QRCHKKVMKERYVEVVPCSTEEMS---------RVLMGGTLGRSG 561
+ K M+ RYVE+ ST S + + T G SG
Sbjct: 346 AK-DKANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASG 389
Score = 50.4 bits (119), Expect = 6e-06
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
+ +RGLP+ A D+ F P P+ E PDGR TG+A FA E A AA+
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIE-----IGPDGRVTGEADVEFATHEDAVAAM 345
Query: 410 RRHKGMLGKRYIELFRSTAA 429
+ K + RY+ELF ++ A
Sbjct: 346 AKDKANMQHRYVELFLNSTA 365
Score = 46.6 bits (109), Expect = 8e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 249 VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308
V RGLP+++++ D+ FF LN R V + + GR GEA + F E A+ +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMR--VHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 309 KHHMGVRYIEVY 320
K +M RY+E++
Sbjct: 349 KANMQHRYVELF 360
>gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo
sapiens]
Length = 449
Score = 117 bits (294), Expect = 3e-26
Identities = 72/191 (37%), Positives = 105/191 (54%), Gaps = 16/191 (8%)
Query: 248 VVRARGLPWQSSDQDVARFFKGLNVARG--GVALCLNAQGRRNGEALIRFVDSEQRDLAL 305
VV+ RGLPW S +V RFF + G G+ +GR +GEA + E+ LAL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 306 QRHKHHMGVRYIEVYKATGEEF---VKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPT 362
++ + MG RY+EV+K+ E +K G S + A + +RLRGLPF
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 125
Query: 363 DVLGFL-GPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYI 421
+++ F G E G T + F GR TG+AF FA +E+A+ AL++HK +G RYI
Sbjct: 126 EIVQFFSGLEIVPNGMTLPVDF----QGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181
Query: 422 ELFRSTAAEVQ 432
E+F+S+ AEV+
Sbjct: 182 EIFKSSRAEVR 192
Score = 112 bits (279), Expect = 2e-24
Identities = 66/201 (32%), Positives = 112/201 (55%), Gaps = 22/201 (10%)
Query: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
++++RGLP+S +V+ F +C + GT G+ F+ +GRP+G+AF EE + A
Sbjct: 12 VVKVRGLPWSCSADEVMRFFS-DCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLA 70
Query: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD-CV 467
L++ + +G RY+E+F+S + E+ VL P +P T D V
Sbjct: 71 LKKDRETMGHRYVEVFKSNSVEMDWVLKHTG-----------------PNSPDTANDGFV 113
Query: 468 RLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQR 527
RLRGLP+ + E+I+ F + +I P+G+ + ++ QGR +G+AF+Q S E A A ++
Sbjct: 114 RLRGLPFGCSKEEIVQFF--SGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK 171
Query: 528 CHKKVMKERYVEVVPCSTEEM 548
HK+ + RY+E+ S E+
Sbjct: 172 -HKERIGHRYIEIFKSSRAEV 191
Score = 73.6 bits (179), Expect = 6e-13
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 234 TGPCSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALI 293
TGP S D VR RGLP+ S +++ +FF GL + G+ L ++ QGR GEA +
Sbjct: 100 TGPNSPDTANDG--FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFV 157
Query: 294 RFVDSEQRDLALQRHKHHMGVRYIEVYKATGEE 326
+F E + AL++HK +G RYIE++K++ E
Sbjct: 158 QFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
Score = 58.5 bits (140), Expect = 2e-08
Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 467 VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQ 526
V++RGLP++ + ++++ F + G+ + ++GRPSG+AF+++ S E A +
Sbjct: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
Query: 527 RCHKKVMKERYVEVVPCSTEEMSRVL 552
+ ++ M RYVEV ++ EM VL
Sbjct: 73 K-DRETMGHRYVEVFKSNSVEMDWVL 97
Score = 53.1 bits (126), Expect = 9e-07
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 466 CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAA 525
CV +RGLPY AT DI +F + + P VH+ + GR +G+A ++ + E A+AA
Sbjct: 290 CVHMRGLPYRATENDIYNFF----SPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAM 345
Query: 526 QRCHKKVMKERYVEVVPCSTEEMS---------RVLMGGTLGRSG 561
+ K M+ RYVE+ ST S + + T G SG
Sbjct: 346 AK-DKANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASG 389
Score = 50.4 bits (119), Expect = 6e-06
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
+ +RGLP+ A D+ F P P+ E PDGR TG+A FA E A AA+
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIE-----IGPDGRVTGEADVEFATHEDAVAAM 345
Query: 410 RRHKGMLGKRYIELFRSTAA 429
+ K + RY+ELF ++ A
Sbjct: 346 AKDKANMQHRYVELFLNSTA 365
Score = 46.6 bits (109), Expect = 8e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 249 VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308
V RGLP+++++ D+ FF LN R V + + GR GEA + F E A+ +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMR--VHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 309 KHHMGVRYIEVY 320
K +M RY+E++
Sbjct: 349 KANMQHRYVELF 360
>gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo
sapiens]
Length = 449
Score = 116 bits (290), Expect = 8e-26
Identities = 71/191 (37%), Positives = 105/191 (54%), Gaps = 16/191 (8%)
Query: 248 VVRARGLPWQSSDQDVARFFKGLNVARG--GVALCLNAQGRRNGEALIRFVDSEQRDLAL 305
VV+ RGLPW S +V RFF + G G+ +GR +GEA + ++ LAL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 306 QRHKHHMGVRYIEVYKATGEEF---VKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPT 362
++ + MG RY+EV+K+ E +K G S + A + +RLRGLPF
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 125
Query: 363 DVLGFL-GPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYI 421
+++ F G E G T + F GR TG+AF FA +E+A+ AL++HK +G RYI
Sbjct: 126 EIVQFFSGLEIVPNGITLPVDF----QGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181
Query: 422 ELFRSTAAEVQ 432
E+F+S+ AEV+
Sbjct: 182 EIFKSSRAEVR 192
Score = 107 bits (268), Expect = 3e-23
Identities = 64/201 (31%), Positives = 110/201 (54%), Gaps = 22/201 (10%)
Query: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
++++RGLP+S +V F +C + G +G+ F+ +GRP+G+AF E+ + A
Sbjct: 12 VVKVRGLPWSCSADEVQRFFS-DCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 70
Query: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD-CV 467
L++ + +G RY+E+F+S E+ VL P +P T D V
Sbjct: 71 LKKDRETMGHRYVEVFKSNNVEMDWVLKHTG-----------------PNSPDTANDGFV 113
Query: 468 RLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQR 527
RLRGLP+ + E+I+ F + +I P+G+ + ++ QGR +G+AF+Q S E A A ++
Sbjct: 114 RLRGLPFGCSKEEIVQFF--SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKK 171
Query: 528 CHKKVMKERYVEVVPCSTEEM 548
HK+ + RY+E+ S E+
Sbjct: 172 -HKERIGHRYIEIFKSSRAEV 191
Score = 74.3 bits (181), Expect = 4e-13
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 234 TGPCSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALI 293
TGP S D VR RGLP+ S +++ +FF GL + G+ L ++ QGR GEA +
Sbjct: 100 TGPNSPDTANDG--FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFV 157
Query: 294 RFVDSEQRDLALQRHKHHMGVRYIEVYKATGEE 326
+F E + AL++HK +G RYIE++K++ E
Sbjct: 158 QFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
Score = 55.8 bits (133), Expect = 1e-07
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 467 VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQ 526
V++RGLP++ + +++ F + G+ + ++GRPSG+AF+++ S + A +
Sbjct: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 527 RCHKKVMKERYVEVVPCSTEEMSRVL 552
+ ++ M RYVEV + EM VL
Sbjct: 73 K-DRETMGHRYVEVFKSNNVEMDWVL 97
Score = 53.1 bits (126), Expect = 9e-07
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 466 CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAA 525
CV +RGLPY AT DI +F + + P VH+ + GR +G+A ++ + E A+AA
Sbjct: 290 CVHMRGLPYRATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAM 345
Query: 526 QRCHKKVMKERYVEVVPCSTEEMS---------RVLMGGTLGRSG 561
+ K M+ RYVE+ ST S + + T G SG
Sbjct: 346 SK-DKANMQHRYVELFLNSTAGASGGAYEHRYVELFLNSTAGASG 389
Score = 51.6 bits (122), Expect = 2e-06
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
+ +RGLP+ A D+ F P PV E PDGR TG+A FA E A AA+
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIE-----IGPDGRVTGEADVEFATHEDAVAAM 345
Query: 410 RRHKGMLGKRYIELFRSTAA 429
+ K + RY+ELF ++ A
Sbjct: 346 SKDKANMQHRYVELFLNSTA 365
Score = 47.4 bits (111), Expect = 5e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 249 VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308
V RGLP+++++ D+ FF LN R V + + GR GEA + F E A+ +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 309 KHHMGVRYIEVY 320
K +M RY+E++
Sbjct: 349 KANMQHRYVELF 360
>gi|149193319 G-rich RNA sequence binding factor 1 isoform 2 [Homo
sapiens]
Length = 318
Score = 112 bits (281), Expect = 9e-25
Identities = 95/321 (29%), Positives = 144/321 (44%), Gaps = 54/321 (16%)
Query: 261 QDVARFFKGLNVARG--GVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIE 318
+DV FF + G G+ LN G+R G+ALI + AL++H+ +MG RY+E
Sbjct: 2 EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
Query: 319 VYKATGEEFVKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPTDVLGFLGPECPVTGGT 378
VY+ E+ + SL+V D V+ RLRGLP+S D++ F V
Sbjct: 62 VYEINNEDVDALM--KSLQVKSSPVVNDGVV-RLRGLPYSCNEKDIVDFFAGLNIVD--- 115
Query: 379 EGLLFVRHPDGR-PTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
+ FV GR TG+A+ F E+A AL +H+ +G RYIE+F S EV+ +
Sbjct: 116 --ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGS 173
Query: 438 Y-----ASGPLLPTLTAPLL-----------------------------PIPFPLAPGTG 463
Y AS P +T P + P P A G
Sbjct: 174 YKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFG 233
Query: 464 RDC----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAE 519
V +RGLP+ A +DI++F A ++P + M + G+ +G+A + + E
Sbjct: 234 TTSSLHFVHMRGLPFQANAQDIINFF----APLKPVRITMEYSSSGKATGEADVHFETHE 289
Query: 520 RALAAAQRCHKKVMKERYVEV 540
A+AA + V RY+E+
Sbjct: 290 DAVAAMLKDRSHV-HHRYIEL 309
Score = 82.0 bits (201), Expect = 2e-15
Identities = 62/238 (26%), Positives = 101/238 (42%), Gaps = 59/238 (24%)
Query: 239 KADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRR-NGEALIRFVD 297
K+ V ++ VVR RGLP+ +++D+ FF GLN+ + ++ +GRR GEA ++F +
Sbjct: 80 KSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEE 137
Query: 298 SEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIAGG------TSLEVARFLSREDQV--- 348
E + AL +H+ +G RYIE++ + E G S A++++ + V
Sbjct: 138 PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEE 197
Query: 349 ------------------------------------------ILRLRGLPFSAGPTDVLG 366
+ +RGLPF A D++
Sbjct: 198 HEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIIN 257
Query: 367 FLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELF 424
F P PV + G+ TG+A F E A AA+ + + + RYIELF
Sbjct: 258 FFAPLKPVR-----ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310
Score = 79.3 bits (194), Expect = 1e-14
Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 24/207 (11%)
Query: 363 DVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIE 422
DVL F +C + G G+ F+ + DG+ GDA E+ Q AL +H+ +G+RY+E
Sbjct: 3 DVLNFFS-DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
Query: 423 LFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDCVRLRGLPYTATIEDIL 482
++ +V ++ + +P VRLRGLPY+ +DI+
Sbjct: 62 VYEINNEDVDALMKS----------------LQVKSSPVVNDGVVRLRGLPYSCNEKDIV 105
Query: 483 SFLGEAAADIRPHGVHMVLNQQG-RPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVV 541
F A + + V++ +G R +G+A++Q E A A + H++ + RY+E+
Sbjct: 106 DFF----AGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLK-HREEIGNRYIEIF 160
Query: 542 PCSTEEMSRVLMGGTLGRSGMSPPPCK 568
P E+ R +G G+ S P K
Sbjct: 161 PSRRNEV-RTHVGSYKGKKIASFPTAK 186
Score = 50.8 bits (120), Expect = 4e-06
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 478 IEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERY 537
+ED+L+F + +G+H +LN+ G+ GDA I+M S + A ++ H+ M +RY
Sbjct: 1 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEK-HRMYMGQRY 59
Query: 538 VEVVPCSTEEMSRVL 552
VEV + E++ ++
Sbjct: 60 VEVYEINNEDVDALM 74
>gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 109 bits (273), Expect = 8e-24
Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 21/222 (9%)
Query: 248 VVRARGLPWQSSDQDVARFFKGLNVARG--GVALCLNAQGRRNGEALIRFVDSEQRDLAL 305
VV+ RGLPW S +DV F + G GV +GR++GEA + + +AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 306 QRHKHHMGVRYIEVYKATGEEF---VKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPT 362
++ + MG RYIEV+K+ E +K +G S + A + +RLRGLPF
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
Query: 363 DVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIE 422
+++ F V G + P+G+ TG+AF FA +ELA+ AL +HK +G RYIE
Sbjct: 126 EIVQFFSGLEIVPNG---ITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
Query: 423 LFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGR 464
+F+S+ EV+ Y+ PL + P P+ PGT R
Sbjct: 183 VFKSSQEEVRS----YSDPPL--KFMSVQRPGPYD-RPGTAR 217
Score = 105 bits (263), Expect = 1e-22
Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 20/200 (10%)
Query: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
+++LRGLP+S DV FL +C + G G+ F+ +GR +G+AF E+ + A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLS-DCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
Query: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDCVR 468
L++ + +G RYIE+F+S E+ VL SGP A VR
Sbjct: 71 LKKDRESMGHRYIEVFKSHRTEMDWVLKH--SGP--------------NSADSANDGFVR 114
Query: 469 LRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRC 528
LRGLP+ T E+I+ F + +I P+G+ + ++ +G+ +G+AF+Q S E A A +
Sbjct: 115 LRGLPFGCTKEEIVQFF--SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK- 171
Query: 529 HKKVMKERYVEVVPCSTEEM 548
HK+ + RY+EV S EE+
Sbjct: 172 HKERIGHRYIEVFKSSQEEV 191
Score = 71.2 bits (173), Expect = 3e-12
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 234 TGPCSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALI 293
+GP S D VR RGLP+ + +++ +FF GL + G+ L ++ +G+ GEA +
Sbjct: 100 SGPNSADSANDG--FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFV 157
Query: 294 RFVDSEQRDLALQRHKHHMGVRYIEVYKATGEE 326
+F E + AL +HK +G RYIEV+K++ EE
Sbjct: 158 QFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
Score = 60.1 bits (144), Expect = 7e-09
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 467 VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQ 526
V+LRGLP++ ++ED+ +FL + GVH + ++GR SG+AF+++ S + A +
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
Query: 527 RCHKKVMKERYVEVVPCSTEEMSRVL 552
+ ++ M RY+EV EM VL
Sbjct: 73 K-DRESMGHRYIEVFKSHRTEMDWVL 97
Score = 52.0 bits (123), Expect = 2e-06
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 456 FPLAPGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQM 515
F + TG CV +RGLPY AT DI +F + + P VH+ + GR +G+A ++
Sbjct: 281 FTVQSTTGH-CVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 516 TSAERALAAAQRCHKKVMKERYVEVVPCST 545
+ E A+AA + + M+ RY+E+ ST
Sbjct: 336 ATHEEAVAAMSK-DRANMQHRYIELFLNST 364
Score = 50.1 bits (118), Expect = 7e-06
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
+ +RGLP+ A D+ F P PV E PDGR TG+A FA E A AA+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIE-----IGPDGRVTGEADVEFATHEEAVAAM 345
Query: 410 RRHKGMLGKRYIELF 424
+ + + RYIELF
Sbjct: 346 SKDRANMQHRYIELF 360
Score = 47.4 bits (111), Expect = 5e-05
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 249 VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308
V RGLP+++++ D+ FF LN R V + + GR GEA + F E+ A+ +
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 309 KHHMGVRYIEVY 320
+ +M RYIE++
Sbjct: 349 RANMQHRYIELF 360
>gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 109 bits (273), Expect = 8e-24
Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 21/222 (9%)
Query: 248 VVRARGLPWQSSDQDVARFFKGLNVARG--GVALCLNAQGRRNGEALIRFVDSEQRDLAL 305
VV+ RGLPW S +DV F + G GV +GR++GEA + + +AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 306 QRHKHHMGVRYIEVYKATGEEF---VKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPT 362
++ + MG RYIEV+K+ E +K +G S + A + +RLRGLPF
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
Query: 363 DVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIE 422
+++ F V G + P+G+ TG+AF FA +ELA+ AL +HK +G RYIE
Sbjct: 126 EIVQFFSGLEIVPNG---ITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
Query: 423 LFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGR 464
+F+S+ EV+ Y+ PL + P P+ PGT R
Sbjct: 183 VFKSSQEEVRS----YSDPPL--KFMSVQRPGPYD-RPGTAR 217
Score = 105 bits (263), Expect = 1e-22
Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 20/200 (10%)
Query: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
+++LRGLP+S DV FL +C + G G+ F+ +GR +G+AF E+ + A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLS-DCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
Query: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDCVR 468
L++ + +G RYIE+F+S E+ VL SGP A VR
Sbjct: 71 LKKDRESMGHRYIEVFKSHRTEMDWVLKH--SGP--------------NSADSANDGFVR 114
Query: 469 LRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRC 528
LRGLP+ T E+I+ F + +I P+G+ + ++ +G+ +G+AF+Q S E A A +
Sbjct: 115 LRGLPFGCTKEEIVQFF--SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK- 171
Query: 529 HKKVMKERYVEVVPCSTEEM 548
HK+ + RY+EV S EE+
Sbjct: 172 HKERIGHRYIEVFKSSQEEV 191
Score = 71.2 bits (173), Expect = 3e-12
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 234 TGPCSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALI 293
+GP S D VR RGLP+ + +++ +FF GL + G+ L ++ +G+ GEA +
Sbjct: 100 SGPNSADSANDG--FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFV 157
Query: 294 RFVDSEQRDLALQRHKHHMGVRYIEVYKATGEE 326
+F E + AL +HK +G RYIEV+K++ EE
Sbjct: 158 QFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
Score = 60.1 bits (144), Expect = 7e-09
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 467 VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQ 526
V+LRGLP++ ++ED+ +FL + GVH + ++GR SG+AF+++ S + A +
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
Query: 527 RCHKKVMKERYVEVVPCSTEEMSRVL 552
+ ++ M RY+EV EM VL
Sbjct: 73 K-DRESMGHRYIEVFKSHRTEMDWVL 97
Score = 52.0 bits (123), Expect = 2e-06
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 456 FPLAPGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQM 515
F + TG CV +RGLPY AT DI +F + + P VH+ + GR +G+A ++
Sbjct: 281 FTVQSTTGH-CVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 516 TSAERALAAAQRCHKKVMKERYVEVVPCST 545
+ E A+AA + + M+ RY+E+ ST
Sbjct: 336 ATHEEAVAAMSK-DRANMQHRYIELFLNST 364
Score = 50.1 bits (118), Expect = 7e-06
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
+ +RGLP+ A D+ F P PV E PDGR TG+A FA E A AA+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIE-----IGPDGRVTGEADVEFATHEEAVAAM 345
Query: 410 RRHKGMLGKRYIELF 424
+ + + RYIELF
Sbjct: 346 SKDRANMQHRYIELF 360
Score = 47.4 bits (111), Expect = 5e-05
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 249 VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308
V RGLP+++++ D+ FF LN R V + + GR GEA + F E+ A+ +
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 309 KHHMGVRYIEVY 320
+ +M RYIE++
Sbjct: 349 RANMQHRYIELF 360
>gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 109 bits (273), Expect = 8e-24
Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 21/222 (9%)
Query: 248 VVRARGLPWQSSDQDVARFFKGLNVARG--GVALCLNAQGRRNGEALIRFVDSEQRDLAL 305
VV+ RGLPW S +DV F + G GV +GR++GEA + + +AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 306 QRHKHHMGVRYIEVYKATGEEF---VKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPT 362
++ + MG RYIEV+K+ E +K +G S + A + +RLRGLPF
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
Query: 363 DVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIE 422
+++ F V G + P+G+ TG+AF FA +ELA+ AL +HK +G RYIE
Sbjct: 126 EIVQFFSGLEIVPNG---ITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
Query: 423 LFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGR 464
+F+S+ EV+ Y+ PL + P P+ PGT R
Sbjct: 183 VFKSSQEEVRS----YSDPPL--KFMSVQRPGPYD-RPGTAR 217
Score = 105 bits (263), Expect = 1e-22
Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 20/200 (10%)
Query: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
+++LRGLP+S DV FL +C + G G+ F+ +GR +G+AF E+ + A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLS-DCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
Query: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDCVR 468
L++ + +G RYIE+F+S E+ VL SGP A VR
Sbjct: 71 LKKDRESMGHRYIEVFKSHRTEMDWVLKH--SGP--------------NSADSANDGFVR 114
Query: 469 LRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRC 528
LRGLP+ T E+I+ F + +I P+G+ + ++ +G+ +G+AF+Q S E A A +
Sbjct: 115 LRGLPFGCTKEEIVQFF--SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK- 171
Query: 529 HKKVMKERYVEVVPCSTEEM 548
HK+ + RY+EV S EE+
Sbjct: 172 HKERIGHRYIEVFKSSQEEV 191
Score = 71.2 bits (173), Expect = 3e-12
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 234 TGPCSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALI 293
+GP S D VR RGLP+ + +++ +FF GL + G+ L ++ +G+ GEA +
Sbjct: 100 SGPNSADSANDG--FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFV 157
Query: 294 RFVDSEQRDLALQRHKHHMGVRYIEVYKATGEE 326
+F E + AL +HK +G RYIEV+K++ EE
Sbjct: 158 QFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
Score = 60.1 bits (144), Expect = 7e-09
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 467 VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQ 526
V+LRGLP++ ++ED+ +FL + GVH + ++GR SG+AF+++ S + A +
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
Query: 527 RCHKKVMKERYVEVVPCSTEEMSRVL 552
+ ++ M RY+EV EM VL
Sbjct: 73 K-DRESMGHRYIEVFKSHRTEMDWVL 97
Score = 52.0 bits (123), Expect = 2e-06
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 456 FPLAPGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQM 515
F + TG CV +RGLPY AT DI +F + + P VH+ + GR +G+A ++
Sbjct: 281 FTVQSTTGH-CVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 516 TSAERALAAAQRCHKKVMKERYVEVVPCST 545
+ E A+AA + + M+ RY+E+ ST
Sbjct: 336 ATHEEAVAAMSK-DRANMQHRYIELFLNST 364
Score = 50.1 bits (118), Expect = 7e-06
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
+ +RGLP+ A D+ F P PV E PDGR TG+A FA E A AA+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIE-----IGPDGRVTGEADVEFATHEEAVAAM 345
Query: 410 RRHKGMLGKRYIELF 424
+ + + RYIELF
Sbjct: 346 SKDRANMQHRYIELF 360
Score = 47.4 bits (111), Expect = 5e-05
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 249 VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308
V RGLP+++++ D+ FF LN R V + + GR GEA + F E+ A+ +
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 309 KHHMGVRYIEVY 320
+ +M RYIE++
Sbjct: 349 RANMQHRYIELF 360
>gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 109 bits (273), Expect = 8e-24
Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 21/222 (9%)
Query: 248 VVRARGLPWQSSDQDVARFFKGLNVARG--GVALCLNAQGRRNGEALIRFVDSEQRDLAL 305
VV+ RGLPW S +DV F + G GV +GR++GEA + + +AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 306 QRHKHHMGVRYIEVYKATGEEF---VKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPT 362
++ + MG RYIEV+K+ E +K +G S + A + +RLRGLPF
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
Query: 363 DVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIE 422
+++ F V G + P+G+ TG+AF FA +ELA+ AL +HK +G RYIE
Sbjct: 126 EIVQFFSGLEIVPNG---ITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
Query: 423 LFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGR 464
+F+S+ EV+ Y+ PL + P P+ PGT R
Sbjct: 183 VFKSSQEEVRS----YSDPPL--KFMSVQRPGPYD-RPGTAR 217
Score = 105 bits (263), Expect = 1e-22
Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 20/200 (10%)
Query: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
+++LRGLP+S DV FL +C + G G+ F+ +GR +G+AF E+ + A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLS-DCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
Query: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDCVR 468
L++ + +G RYIE+F+S E+ VL SGP A VR
Sbjct: 71 LKKDRESMGHRYIEVFKSHRTEMDWVLKH--SGP--------------NSADSANDGFVR 114
Query: 469 LRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRC 528
LRGLP+ T E+I+ F + +I P+G+ + ++ +G+ +G+AF+Q S E A A +
Sbjct: 115 LRGLPFGCTKEEIVQFF--SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK- 171
Query: 529 HKKVMKERYVEVVPCSTEEM 548
HK+ + RY+EV S EE+
Sbjct: 172 HKERIGHRYIEVFKSSQEEV 191
Score = 71.2 bits (173), Expect = 3e-12
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 234 TGPCSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALI 293
+GP S D VR RGLP+ + +++ +FF GL + G+ L ++ +G+ GEA +
Sbjct: 100 SGPNSADSANDG--FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFV 157
Query: 294 RFVDSEQRDLALQRHKHHMGVRYIEVYKATGEE 326
+F E + AL +HK +G RYIEV+K++ EE
Sbjct: 158 QFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
Score = 60.1 bits (144), Expect = 7e-09
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 467 VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQ 526
V+LRGLP++ ++ED+ +FL + GVH + ++GR SG+AF+++ S + A +
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
Query: 527 RCHKKVMKERYVEVVPCSTEEMSRVL 552
+ ++ M RY+EV EM VL
Sbjct: 73 K-DRESMGHRYIEVFKSHRTEMDWVL 97
Score = 52.0 bits (123), Expect = 2e-06
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 456 FPLAPGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQM 515
F + TG CV +RGLPY AT DI +F + + P VH+ + GR +G+A ++
Sbjct: 281 FTVQSTTGH-CVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 516 TSAERALAAAQRCHKKVMKERYVEVVPCST 545
+ E A+AA + + M+ RY+E+ ST
Sbjct: 336 ATHEEAVAAMSK-DRANMQHRYIELFLNST 364
Score = 50.1 bits (118), Expect = 7e-06
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
+ +RGLP+ A D+ F P PV E PDGR TG+A FA E A AA+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIE-----IGPDGRVTGEADVEFATHEEAVAAM 345
Query: 410 RRHKGMLGKRYIELF 424
+ + + RYIELF
Sbjct: 346 SKDRANMQHRYIELF 360
Score = 47.4 bits (111), Expect = 5e-05
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 249 VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308
V RGLP+++++ D+ FF LN R V + + GR GEA + F E+ A+ +
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 309 KHHMGVRYIEVY 320
+ +M RYIE++
Sbjct: 349 RANMQHRYIELF 360
>gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 109 bits (273), Expect = 8e-24
Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 21/222 (9%)
Query: 248 VVRARGLPWQSSDQDVARFFKGLNVARG--GVALCLNAQGRRNGEALIRFVDSEQRDLAL 305
VV+ RGLPW S +DV F + G GV +GR++GEA + + +AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 306 QRHKHHMGVRYIEVYKATGEEF---VKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPT 362
++ + MG RYIEV+K+ E +K +G S + A + +RLRGLPF
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
Query: 363 DVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIE 422
+++ F V G + P+G+ TG+AF FA +ELA+ AL +HK +G RYIE
Sbjct: 126 EIVQFFSGLEIVPNG---ITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
Query: 423 LFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGR 464
+F+S+ EV+ Y+ PL + P P+ PGT R
Sbjct: 183 VFKSSQEEVRS----YSDPPL--KFMSVQRPGPYD-RPGTAR 217
Score = 105 bits (263), Expect = 1e-22
Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 20/200 (10%)
Query: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
+++LRGLP+S DV FL +C + G G+ F+ +GR +G+AF E+ + A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLS-DCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
Query: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDCVR 468
L++ + +G RYIE+F+S E+ VL SGP A VR
Sbjct: 71 LKKDRESMGHRYIEVFKSHRTEMDWVLKH--SGP--------------NSADSANDGFVR 114
Query: 469 LRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRC 528
LRGLP+ T E+I+ F + +I P+G+ + ++ +G+ +G+AF+Q S E A A +
Sbjct: 115 LRGLPFGCTKEEIVQFF--SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK- 171
Query: 529 HKKVMKERYVEVVPCSTEEM 548
HK+ + RY+EV S EE+
Sbjct: 172 HKERIGHRYIEVFKSSQEEV 191
Score = 71.2 bits (173), Expect = 3e-12
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 234 TGPCSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALI 293
+GP S D VR RGLP+ + +++ +FF GL + G+ L ++ +G+ GEA +
Sbjct: 100 SGPNSADSANDG--FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFV 157
Query: 294 RFVDSEQRDLALQRHKHHMGVRYIEVYKATGEE 326
+F E + AL +HK +G RYIEV+K++ EE
Sbjct: 158 QFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
Score = 60.1 bits (144), Expect = 7e-09
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 467 VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQ 526
V+LRGLP++ ++ED+ +FL + GVH + ++GR SG+AF+++ S + A +
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
Query: 527 RCHKKVMKERYVEVVPCSTEEMSRVL 552
+ ++ M RY+EV EM VL
Sbjct: 73 K-DRESMGHRYIEVFKSHRTEMDWVL 97
Score = 52.0 bits (123), Expect = 2e-06
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 456 FPLAPGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQM 515
F + TG CV +RGLPY AT DI +F + + P VH+ + GR +G+A ++
Sbjct: 281 FTVQSTTGH-CVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 516 TSAERALAAAQRCHKKVMKERYVEVVPCST 545
+ E A+AA + + M+ RY+E+ ST
Sbjct: 336 ATHEEAVAAMSK-DRANMQHRYIELFLNST 364
Score = 50.1 bits (118), Expect = 7e-06
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
+ +RGLP+ A D+ F P PV E PDGR TG+A FA E A AA+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIE-----IGPDGRVTGEADVEFATHEEAVAAM 345
Query: 410 RRHKGMLGKRYIELF 424
+ + + RYIELF
Sbjct: 346 SKDRANMQHRYIELF 360
Score = 47.4 bits (111), Expect = 5e-05
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 249 VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308
V RGLP+++++ D+ FF LN R V + + GR GEA + F E+ A+ +
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 309 KHHMGVRYIEVY 320
+ +M RYIE++
Sbjct: 349 RANMQHRYIELF 360
>gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
Length = 415
Score = 109 bits (273), Expect = 8e-24
Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 21/222 (9%)
Query: 248 VVRARGLPWQSSDQDVARFFKGLNVARG--GVALCLNAQGRRNGEALIRFVDSEQRDLAL 305
VV+ RGLPW S +DV F + G GV +GR++GEA + + +AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 306 QRHKHHMGVRYIEVYKATGEEF---VKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPT 362
++ + MG RYIEV+K+ E +K +G S + A + +RLRGLPF
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
Query: 363 DVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIE 422
+++ F V G + P+G+ TG+AF FA +ELA+ AL +HK +G RYIE
Sbjct: 126 EIVQFFSGLEIVPNG---ITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
Query: 423 LFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGR 464
+F+S+ EV+ Y+ PL + P P+ PGT R
Sbjct: 183 VFKSSQEEVRS----YSDPPL--KFMSVQRPGPYD-RPGTAR 217
Score = 105 bits (263), Expect = 1e-22
Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 20/200 (10%)
Query: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
+++LRGLP+S DV FL +C + G G+ F+ +GR +G+AF E+ + A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLS-DCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
Query: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDCVR 468
L++ + +G RYIE+F+S E+ VL SGP A VR
Sbjct: 71 LKKDRESMGHRYIEVFKSHRTEMDWVLKH--SGP--------------NSADSANDGFVR 114
Query: 469 LRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRC 528
LRGLP+ T E+I+ F + +I P+G+ + ++ +G+ +G+AF+Q S E A A +
Sbjct: 115 LRGLPFGCTKEEIVQFF--SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK- 171
Query: 529 HKKVMKERYVEVVPCSTEEM 548
HK+ + RY+EV S EE+
Sbjct: 172 HKERIGHRYIEVFKSSQEEV 191
Score = 71.2 bits (173), Expect = 3e-12
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 234 TGPCSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALI 293
+GP S D VR RGLP+ + +++ +FF GL + G+ L ++ +G+ GEA +
Sbjct: 100 SGPNSADSANDG--FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFV 157
Query: 294 RFVDSEQRDLALQRHKHHMGVRYIEVYKATGEE 326
+F E + AL +HK +G RYIEV+K++ EE
Sbjct: 158 QFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
Score = 60.1 bits (144), Expect = 7e-09
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 467 VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQ 526
V+LRGLP++ ++ED+ +FL + GVH + ++GR SG+AF+++ S + A +
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
Query: 527 RCHKKVMKERYVEVVPCSTEEMSRVL 552
+ ++ M RY+EV EM VL
Sbjct: 73 K-DRESMGHRYIEVFKSHRTEMDWVL 97
Score = 52.0 bits (123), Expect = 2e-06
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 456 FPLAPGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQM 515
F + TG CV +RGLPY AT DI +F + + P VH+ + GR +G+A ++
Sbjct: 281 FTVQSTTGH-CVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 516 TSAERALAAAQRCHKKVMKERYVEVVPCST 545
+ E A+AA + + M+ RY+E+ ST
Sbjct: 336 ATHEEAVAAMSK-DRANMQHRYIELFLNST 364
Score = 50.1 bits (118), Expect = 7e-06
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
+ +RGLP+ A D+ F P PV E PDGR TG+A FA E A AA+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIE-----IGPDGRVTGEADVEFATHEEAVAAM 345
Query: 410 RRHKGMLGKRYIELF 424
+ + + RYIELF
Sbjct: 346 SKDRANMQHRYIELF 360
Score = 47.4 bits (111), Expect = 5e-05
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 249 VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308
V RGLP+++++ D+ FF LN R V + + GR GEA + F E+ A+ +
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 309 KHHMGVRYIEVY 320
+ +M RYIE++
Sbjct: 349 RANMQHRYIELF 360
>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 92.8 bits (229), Expect = 1e-18
Identities = 99/400 (24%), Positives = 165/400 (41%), Gaps = 52/400 (13%)
Query: 249 VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308
V G+P+ + + DV FF GL V V L + GR NG L++F+ + AL+R+
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 309 KHHMGVRYIEVYKATGEEFVKIAG-----------GTSLEVARFLSR------------- 344
+ M RY+EV AT ++V G G + + L R
Sbjct: 364 RMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSR 423
Query: 345 ---EDQVILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFAC 401
E + L+GLPF A V+ F V + + P+G+ TG+ F F
Sbjct: 424 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIV---EDSIYIAYGPNGKATGEGFVEFRN 480
Query: 402 EELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPG 461
E +AAL RHK +G R+I++ T + + ++ + + +
Sbjct: 481 EADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVN 540
Query: 462 TGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERA 521
+ + C + +P++ T D+L FL D + VH++++ G+ G A +Q + + A
Sbjct: 541 SAKVCAHITNIPFSITKMDVLQFLEGIPVD--ENAVHVLVDNNGQGLGQALVQFKNEDDA 598
Query: 522 LAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG-GTLGRSGMSPPPCKLPCLSPPTYTTF 580
++R H+K + R V + E+M + G+ G+ K+P P
Sbjct: 599 -RKSERLHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKKGL-----KMPVPGNPA---- 648
Query: 581 QATPTLIPTETAALYPSSALLPAARVPAAPTPVAYYPGPA 620
+P A P LP+A +P A P PG A
Sbjct: 649 ------VPGMPNAGLPGVG-LPSAGLPGAGLPSTGLPGSA 681
Score = 68.2 bits (165), Expect = 3e-11
Identities = 74/303 (24%), Positives = 123/303 (40%), Gaps = 37/303 (12%)
Query: 215 KEPSSQLFSKPEVIKQKYETGPCSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVAR 274
K PS Q S+ + +E G C V +GLP+++ ++ V FFK L++
Sbjct: 412 KSPSGQKRSRS---RSPHEAGFC-----------VYLKGLPFEAENKHVIDFFKKLDIVE 457
Query: 275 GGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIAGGT 334
+ + G+ GE + F + AL RHK +MG R+I+V+ T + ++
Sbjct: 458 DSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMI 517
Query: 335 SLEVARFLSREDQVILRLRG-------------LPFSAGPTDVLGFLGPECPVTGGTEGL 381
+ F + ++IL G +PFS DVL FL PV +
Sbjct: 518 RKRLQNFSYDQREMILNPEGDVNSAKVCAHITNIPFSITKMDVLQFL-EGIPVDENAVHV 576
Query: 382 LFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLN----R 437
L +G+ G A F E+ A+ + R H+ L R + T +++++ +
Sbjct: 577 LV--DNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMREIEKNPPAQ 634
Query: 438 YASGPLLPTLTAPLLP-IPFPLAPGTGRDCVRL--RGLPYTATIEDILSFLGEAAADIRP 494
G +P P +P +P PG G L GLP T ++ G A +
Sbjct: 635 GKKGLKMPVPGNPAVPGMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPS 694
Query: 495 HGV 497
G+
Sbjct: 695 AGI 697
Score = 55.1 bits (131), Expect = 2e-07
Identities = 55/219 (25%), Positives = 95/219 (43%), Gaps = 26/219 (11%)
Query: 346 DQVILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELA 405
D + + + G+PFSA DV F + + ++ GR G+ F +
Sbjct: 302 DDLYVSVHGMPFSAMENDVRDFFHGL-----RVDAVHLLKDHVGRNNGNGLVKFLSPQDT 356
Query: 406 QAALRRHKGMLGKRYIELFRSTAAEVQQVL---------NRYASGPL-LPTLTAPLLPIP 455
AL+R++ ++ +RY+E+ S A E Q V N SG P T P P
Sbjct: 357 FEALKRNRMLMIQRYVEV--SPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSP 414
Query: 456 F------PLAPGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSG 509
+P CV L+GLP+ A + ++ F + DI +++ G+ +G
Sbjct: 415 SGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKK--LDIVEDSIYIAYGPNGKATG 472
Query: 510 DAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEM 548
+ F++ + AA R HK+ M R+++V P + + M
Sbjct: 473 EGFVEFRNEADYKAALCR-HKQYMGNRFIQVHPITKKGM 510
Score = 43.1 bits (100), Expect = 9e-04
Identities = 73/357 (20%), Positives = 117/357 (32%), Gaps = 41/357 (11%)
Query: 348 VILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQA 407
V++RL+GLP AG D+ F GG H G G+AF +FA +E A+
Sbjct: 3 VVIRLQGLPIVAGTMDIRHFFSGLTIPDGGV-------HIVGGELGEAFIVFATDEDARL 55
Query: 408 ALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDCV 467
+ R G + + L S+ E+Q ++ L + P A +
Sbjct: 56 GMMRTGGTIKGSKVTLLLSSKTEMQNMIE-------LSRRRFETANLDIPPANASRSGPP 108
Query: 468 RLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQR 527
G+ + +S + + V + IQ S A
Sbjct: 109 PSSGMSSRVNLPTTVSNFNNPSPSV-------VTATTSVHESNKNIQTFSTASVGTAPPN 161
Query: 528 CHKKVMKERYVEVVPCSTEEMSRV---LMGGTLGRSGMSPPPCKLPCLSPPTYTTFQATP 584
+ VP + M+ V + + P P P PP T P
Sbjct: 162 MGASFGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVP 221
Query: 585 TLIPTETAALYPSSALLP--AARVPAAPTPVAYYP------GPATQLYLNYTAYYPSP-- 634
+ P P LP + P P PVA P G L N + P
Sbjct: 222 PVPPIPPVPSVPPMTPLPPMSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMFLGPLN 281
Query: 635 PVSPTTVGYLTTPTAALASAPTSVLSQSGALVRMQGVPYTAGMKDLLSVFQAYQLPA 691
PV+P + + +S ++ V + G+P++A D+ F ++ A
Sbjct: 282 PVNPIQMN-------SQSSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDA 331
Score = 40.8 bits (94), Expect = 0.004
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 463 GRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 522
G ++++ +P+T +I++IL F + P V + N++G P+G+A + S + A
Sbjct: 854 GPTVIKVQNMPFTVSIDEILDFF--YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAT 911
Query: 523 AAAQRCHKKVMKERYVEVV 541
AA + + + R V++V
Sbjct: 912 AAVIDLNDRPIGSRKVKLV 930
Score = 38.9 bits (89), Expect = 0.017
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 248 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
V+R +GLP + D+ FF GL + GGV + G GEA I F E L + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Score = 36.2 bits (82), Expect = 0.11
Identities = 56/243 (23%), Positives = 91/243 (37%), Gaps = 40/243 (16%)
Query: 467 VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQ 526
+RL+GLP A DI F + I GVH+V G G+AFI + E A
Sbjct: 5 IRLQGLPIVAGTMDIRHFF--SGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMM 58
Query: 527 RCHKKVMKERYVEVVPCSTEEMSRV-LMGGTLGRSGMSPPPCKLPCLSPPTYTTFQATPT 585
R + + ++ TE + + L + + PP PP
Sbjct: 59 RTGGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPP---------- 108
Query: 586 LIPTETAALYPSSALLPAARVPAAPTPVAYYPGPATQLYLNYTAYYPSPPVSPTTVGYLT 645
PSS + ++RV PT V+ + P+ + T+ + S T
Sbjct: 109 ----------PSSGM--SSRV-NLPTTVSNFNNPSPSVVTATTSVHES------NKNIQT 149
Query: 646 TPTAALASAPTSVLSQSGALVRMQGVPYTAGMKDLLSVFQAYQLPA----DDYTSLMPVG 701
TA++ +AP ++ + G+ VP TA + + +PA S+ P+
Sbjct: 150 FSTASVGTAPPNMGASFGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIP 209
Query: 702 DPP 704
PP
Sbjct: 210 VPP 212
>gi|23510462 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 92.8 bits (229), Expect = 1e-18
Identities = 99/400 (24%), Positives = 165/400 (41%), Gaps = 52/400 (13%)
Query: 249 VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308
V G+P+ + + DV FF GL V V L + GR NG L++F+ + AL+R+
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 309 KHHMGVRYIEVYKATGEEFVKIAG-----------GTSLEVARFLSR------------- 344
+ M RY+EV AT ++V G G + + L R
Sbjct: 364 RMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSR 423
Query: 345 ---EDQVILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFAC 401
E + L+GLPF A V+ F V + + P+G+ TG+ F F
Sbjct: 424 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIV---EDSIYIAYGPNGKATGEGFVEFRN 480
Query: 402 EELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPG 461
E +AAL RHK +G R+I++ T + + ++ + + +
Sbjct: 481 EADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVN 540
Query: 462 TGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERA 521
+ + C + +P++ T D+L FL D + VH++++ G+ G A +Q + + A
Sbjct: 541 SAKVCAHITNIPFSITKMDVLQFLEGIPVD--ENAVHVLVDNNGQGLGQALVQFKNEDDA 598
Query: 522 LAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG-GTLGRSGMSPPPCKLPCLSPPTYTTF 580
++R H+K + R V + E+M + G+ G+ K+P P
Sbjct: 599 -RKSERLHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKKGL-----KMPVPGNPA---- 648
Query: 581 QATPTLIPTETAALYPSSALLPAARVPAAPTPVAYYPGPA 620
+P A P LP+A +P A P PG A
Sbjct: 649 ------VPGMPNAGLPGVG-LPSAGLPGAGLPSTGLPGSA 681
Score = 68.2 bits (165), Expect = 3e-11
Identities = 74/303 (24%), Positives = 123/303 (40%), Gaps = 37/303 (12%)
Query: 215 KEPSSQLFSKPEVIKQKYETGPCSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVAR 274
K PS Q S+ + +E G C V +GLP+++ ++ V FFK L++
Sbjct: 412 KSPSGQKRSRS---RSPHEAGFC-----------VYLKGLPFEAENKHVIDFFKKLDIVE 457
Query: 275 GGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIAGGT 334
+ + G+ GE + F + AL RHK +MG R+I+V+ T + ++
Sbjct: 458 DSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMI 517
Query: 335 SLEVARFLSREDQVILRLRG-------------LPFSAGPTDVLGFLGPECPVTGGTEGL 381
+ F + ++IL G +PFS DVL FL PV +
Sbjct: 518 RKRLQNFSYDQREMILNPEGDVNSAKVCAHITNIPFSITKMDVLQFL-EGIPVDENAVHV 576
Query: 382 LFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLN----R 437
L +G+ G A F E+ A+ + R H+ L R + T +++++ +
Sbjct: 577 LV--DNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMREIEKNPPAQ 634
Query: 438 YASGPLLPTLTAPLLP-IPFPLAPGTGRDCVRL--RGLPYTATIEDILSFLGEAAADIRP 494
G +P P +P +P PG G L GLP T ++ G A +
Sbjct: 635 GKKGLKMPVPGNPAVPGMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPS 694
Query: 495 HGV 497
G+
Sbjct: 695 AGI 697
Score = 55.1 bits (131), Expect = 2e-07
Identities = 55/219 (25%), Positives = 95/219 (43%), Gaps = 26/219 (11%)
Query: 346 DQVILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELA 405
D + + + G+PFSA DV F + + ++ GR G+ F +
Sbjct: 302 DDLYVSVHGMPFSAMENDVRDFFHGL-----RVDAVHLLKDHVGRNNGNGLVKFLSPQDT 356
Query: 406 QAALRRHKGMLGKRYIELFRSTAAEVQQVL---------NRYASGPL-LPTLTAPLLPIP 455
AL+R++ ++ +RY+E+ S A E Q V N SG P T P P
Sbjct: 357 FEALKRNRMLMIQRYVEV--SPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSP 414
Query: 456 F------PLAPGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSG 509
+P CV L+GLP+ A + ++ F + DI +++ G+ +G
Sbjct: 415 SGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKK--LDIVEDSIYIAYGPNGKATG 472
Query: 510 DAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEM 548
+ F++ + AA R HK+ M R+++V P + + M
Sbjct: 473 EGFVEFRNEADYKAALCR-HKQYMGNRFIQVHPITKKGM 510
Score = 43.1 bits (100), Expect = 9e-04
Identities = 73/357 (20%), Positives = 117/357 (32%), Gaps = 41/357 (11%)
Query: 348 VILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQA 407
V++RL+GLP AG D+ F GG H G G+AF +FA +E A+
Sbjct: 3 VVIRLQGLPIVAGTMDIRHFFSGLTIPDGGV-------HIVGGELGEAFIVFATDEDARL 55
Query: 408 ALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDCV 467
+ R G + + L S+ E+Q ++ L + P A +
Sbjct: 56 GMMRTGGTIKGSKVTLLLSSKTEMQNMIE-------LSRRRFETANLDIPPANASRSGPP 108
Query: 468 RLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQR 527
G+ + +S + + V + IQ S A
Sbjct: 109 PSSGMSSRVNLPTTVSNFNNPSPSV-------VTATTSVHESNKNIQTFSTASVGTAPPN 161
Query: 528 CHKKVMKERYVEVVPCSTEEMSRV---LMGGTLGRSGMSPPPCKLPCLSPPTYTTFQATP 584
+ VP + M+ V + + P P P PP T P
Sbjct: 162 MGASFGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVP 221
Query: 585 TLIPTETAALYPSSALLP--AARVPAAPTPVAYYP------GPATQLYLNYTAYYPSP-- 634
+ P P LP + P P PVA P G L N + P
Sbjct: 222 PVPPIPPVPSVPPMTPLPPMSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMFLGPLN 281
Query: 635 PVSPTTVGYLTTPTAALASAPTSVLSQSGALVRMQGVPYTAGMKDLLSVFQAYQLPA 691
PV+P + + +S ++ V + G+P++A D+ F ++ A
Sbjct: 282 PVNPIQMN-------SQSSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDA 331
Score = 40.8 bits (94), Expect = 0.004
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 463 GRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 522
G ++++ +P+T +I++IL F + P V + N++G P+G+A + S + A
Sbjct: 854 GPTVIKVQNMPFTVSIDEILDFF--YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAT 911
Query: 523 AAAQRCHKKVMKERYVEVV 541
AA + + + R V++V
Sbjct: 912 AAVIDLNDRPIGSRKVKLV 930
Score = 38.9 bits (89), Expect = 0.017
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 248 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
V+R +GLP + D+ FF GL + GGV + G GEA I F E L + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Score = 36.2 bits (82), Expect = 0.11
Identities = 56/243 (23%), Positives = 91/243 (37%), Gaps = 40/243 (16%)
Query: 467 VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQ 526
+RL+GLP A DI F + I GVH+V G G+AFI + E A
Sbjct: 5 IRLQGLPIVAGTMDIRHFF--SGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMM 58
Query: 527 RCHKKVMKERYVEVVPCSTEEMSRV-LMGGTLGRSGMSPPPCKLPCLSPPTYTTFQATPT 585
R + + ++ TE + + L + + PP PP
Sbjct: 59 RTGGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPP---------- 108
Query: 586 LIPTETAALYPSSALLPAARVPAAPTPVAYYPGPATQLYLNYTAYYPSPPVSPTTVGYLT 645
PSS + ++RV PT V+ + P+ + T+ + S T
Sbjct: 109 ----------PSSGM--SSRV-NLPTTVSNFNNPSPSVVTATTSVHES------NKNIQT 149
Query: 646 TPTAALASAPTSVLSQSGALVRMQGVPYTAGMKDLLSVFQAYQLPA----DDYTSLMPVG 701
TA++ +AP ++ + G+ VP TA + + +PA S+ P+
Sbjct: 150 FSTASVGTAPPNMGASFGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIP 209
Query: 702 DPP 704
PP
Sbjct: 210 VPP 212
>gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a
[Homo sapiens]
Length = 346
Score = 73.6 bits (179), Expect = 6e-13
Identities = 32/82 (39%), Positives = 53/82 (64%)
Query: 245 SETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 304
S+ VR RGLP+ S +++ +FF+GL + G+ L ++ QGR GEA ++F E + A
Sbjct: 14 SDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENA 73
Query: 305 LQRHKHHMGVRYIEVYKATGEE 326
L +HK +G RYIE+++++ E
Sbjct: 74 LGKHKERIGHRYIEIFRSSRSE 95
Score = 62.4 bits (150), Expect = 1e-09
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 350 LRLRGLPFSAGPTDVLGFL-GPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
+RLRGLPF +++ F G E G T + + GR TG+AF FA +E+A+ A
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDY----QGRSTGEAFVQFASKEIAENA 73
Query: 409 LRRHKGMLGKRYIELFRSTAAEVQ 432
L +HK +G RYIE+FRS+ +E++
Sbjct: 74 LGKHKERIGHRYIEIFRSSRSEIK 97
Score = 56.2 bits (134), Expect = 1e-07
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 467 VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQ 526
VRLRGLP+ + E+I+ F +I P+G+ + ++ QGR +G+AF+Q S E A A
Sbjct: 18 VRLRGLPFGCSKEEIVQFF--QGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 527 RCHKKVMKERYVEVVPCSTEEM 548
+ HK+ + RY+E+ S E+
Sbjct: 76 K-HKERIGHRYIEIFRSSRSEI 96
Score = 55.1 bits (131), Expect = 2e-07
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 249 VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308
V RGLP+++++ D+A FF LN R V + + A GR GEA + FV E A+ +
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIR--VHIDIGADGRATGEADVEFVTHEDAVAAMSKD 254
Query: 309 KHHMGVRYIEVY 320
K++M RYIE++
Sbjct: 255 KNNMQHRYIELF 266
Score = 50.1 bits (118), Expect = 7e-06
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 463 GRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 522
G V +RGLP+ AT DI +F + + P VH+ + GR +G+A ++ + E A+
Sbjct: 193 GGHFVHMRGLPFRATENDIANFF----SPLNPIRVHIDIGADGRATGEADVEFVTHEDAV 248
Query: 523 AAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG---GTLGRSGM 562
AA + K M+ RY+E+ ST + G G GR GM
Sbjct: 249 AAMSK-DKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGM 290
Score = 45.8 bits (107), Expect = 1e-04
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
+ +RGLPF A D+ F P P+ + DGR TG+A F E A AA+
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHID-----IGADGRATGEADVEFVTHEDAVAAM 251
Query: 410 RRHKGMLGKRYIELF 424
+ K + RYIELF
Sbjct: 252 SKDKNNMQHRYIELF 266
>gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b
[Homo sapiens]
Length = 331
Score = 73.6 bits (179), Expect = 6e-13
Identities = 32/82 (39%), Positives = 53/82 (64%)
Query: 245 SETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 304
S+ VR RGLP+ S +++ +FF+GL + G+ L ++ QGR GEA ++F E + A
Sbjct: 14 SDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENA 73
Query: 305 LQRHKHHMGVRYIEVYKATGEE 326
L +HK +G RYIE+++++ E
Sbjct: 74 LGKHKERIGHRYIEIFRSSRSE 95
Score = 62.4 bits (150), Expect = 1e-09
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 350 LRLRGLPFSAGPTDVLGFL-GPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
+RLRGLPF +++ F G E G T + + GR TG+AF FA +E+A+ A
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDY----QGRSTGEAFVQFASKEIAENA 73
Query: 409 LRRHKGMLGKRYIELFRSTAAEVQ 432
L +HK +G RYIE+FRS+ +E++
Sbjct: 74 LGKHKERIGHRYIEIFRSSRSEIK 97
Score = 56.2 bits (134), Expect = 1e-07
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 467 VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQ 526
VRLRGLP+ + E+I+ F +I P+G+ + ++ QGR +G+AF+Q S E A A
Sbjct: 18 VRLRGLPFGCSKEEIVQFF--QGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 527 RCHKKVMKERYVEVVPCSTEEM 548
+ HK+ + RY+E+ S E+
Sbjct: 76 K-HKERIGHRYIEIFRSSRSEI 96
Score = 55.1 bits (131), Expect = 2e-07
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 249 VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308
V RGLP+++++ D+A FF LN R V + + A GR GEA + FV E A+ +
Sbjct: 182 VHMRGLPFRATENDIANFFSPLNPIR--VHIDIGADGRATGEADVEFVTHEDAVAAMSKD 239
Query: 309 KHHMGVRYIEVY 320
K++M RYIE++
Sbjct: 240 KNNMQHRYIELF 251
Score = 50.1 bits (118), Expect = 7e-06
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 463 GRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 522
G V +RGLP+ AT DI +F + + P VH+ + GR +G+A ++ + E A+
Sbjct: 178 GGHFVHMRGLPFRATENDIANFF----SPLNPIRVHIDIGADGRATGEADVEFVTHEDAV 233
Query: 523 AAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG---GTLGRSGM 562
AA + K M+ RY+E+ ST + G G GR GM
Sbjct: 234 AAMSK-DKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGM 275
Score = 45.8 bits (107), Expect = 1e-04
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
+ +RGLPF A D+ F P P+ + DGR TG+A F E A AA+
Sbjct: 182 VHMRGLPFRATENDIANFFSPLNPIRVHID-----IGADGRATGEADVEFVTHEDAVAAM 236
Query: 410 RRHKGMLGKRYIELF 424
+ K + RYIELF
Sbjct: 237 SKDKNNMQHRYIELF 251
>gi|118722349 RNA binding motif protein 12B [Homo sapiens]
Length = 1001
Score = 73.6 bits (179), Expect = 6e-13
Identities = 73/266 (27%), Positives = 110/266 (41%), Gaps = 59/266 (22%)
Query: 348 VILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQA 407
V++RL GLPF AGP D+ F GG H G G+AF +FA +E A+
Sbjct: 3 VVIRLLGLPFIAGPVDIRHFFTGLTIPDGGV-------HIIGGEIGEAFIIFATDEDARR 55
Query: 408 ALRRHKGMLGKRYIELFRSTAAEVQQVL----------NRYASGPL-LPTLTAPLLPIPF 456
A+ R G + +ELF S+ AE+Q+ + R SG + +L+ + +
Sbjct: 56 AISRSGGFIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKE 115
Query: 457 PLA----------------PGTGRDCVR---------------LRGLPYTATIEDILSFL 485
+ GTG +R LRGLPY +D+ F
Sbjct: 116 EASNSGYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFF 175
Query: 486 GEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCST 545
D GV + + GR +GDA ++ S A + +CH+ M R++EV+ S
Sbjct: 176 SGLCVD----GVIFLKHHDGRNNGDAIVKFASCVDA-SGGLKCHRSFMGSRFIEVMQGSE 230
Query: 546 EEM-----SRVLMGGTLGRSGMSPPP 566
++ + V G L RS PP
Sbjct: 231 QQWIEFGGNAVKEGDVLRRSEEHSPP 256
Score = 65.1 bits (157), Expect = 2e-10
Identities = 66/307 (21%), Positives = 125/307 (40%), Gaps = 43/307 (14%)
Query: 252 RGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHH 311
RGLP+ ++ DV FF GL V GV + GR NG+A+++F L+ H+
Sbjct: 160 RGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSF 217
Query: 312 MGVRYIEVYKATGEEFVKIAGGTSLEVARFLSREDQ------------------------ 347
MG R+IEV + + +++++ GG +++ L R ++
Sbjct: 218 MGSRFIEVMQGSEQQWIEF-GGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRT 276
Query: 348 -------VILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFA 400
+ L+ L S D+ F T T+ + + D T AF +F
Sbjct: 277 RSRSPLGFYVHLKNLSLSIDERDLRNFFRG----TDLTDEQIRFLYKDENRTRYAFVMFK 332
Query: 401 CEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRY---ASGPLLPTLTAPLLPIPFP 457
+ AL HK +L R + + + ++ + + RY SG L +
Sbjct: 333 TLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFIARYEKKRSGSLERDRPGHVSQKYSQ 392
Query: 458 LAPGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTS 517
+ C+ +R P+ T ++ F + + ++++ + +G G+A ++ S
Sbjct: 393 EGNSGQKLCIYIRNFPFDVTKVEVQKFFADFL--LAEDDIYLLYDDKGVGLGEALVKFKS 450
Query: 518 AERALAA 524
E+A+ A
Sbjct: 451 EEQAMKA 457
Score = 40.4 bits (93), Expect = 0.006
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 461 GTGRDC-VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAE 519
G+GR +++ LP+ A + +IL F I P V + N+QG P+G+A + M +
Sbjct: 920 GSGRVTPIKIMNLPFKANVNEILDFFH--GYRIIPDSVSIQYNEQGLPTGEAIVAMINYN 977
Query: 520 RALAAAQRCHKKVMKERYVEV 540
A+AA + + + + R V++
Sbjct: 978 EAMAAIKDLNDRPVGPRKVKL 998
Score = 38.5 bits (88), Expect = 0.022
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 248 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
V+R GLP+ + D+ FF GL + GGV + G GEA I F E A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 308 HKHHMGVRYIEVYKATGEEFVK 329
+ +E++ ++ E K
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQK 81
Score = 33.5 bits (75), Expect = 0.70
Identities = 14/60 (23%), Positives = 32/60 (53%)
Query: 247 TVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQ 306
T ++ LP++++ ++ FF G + V++ N QG GEA++ ++ + A++
Sbjct: 925 TPIKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 32.7 bits (73), Expect = 1.2
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 204 KTMVAVILHLLKEPSSQLF-SKPEVIKQKYETGPCSKADVVDSETVVRARGLPWQSSDQD 262
K M+ I K+ S L +P + QKY S+ + + R P+ + +
Sbjct: 361 KQMLKFIARYEKKRSGSLERDRPGHVSQKY-----SQEGNSGQKLCIYIRNFPFDVTKVE 415
Query: 263 VARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQ 300
V +FF +A + L + +G GEAL++F EQ
Sbjct: 416 VQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQ 453
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 58.9 bits (141), Expect = 2e-08
Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 19/202 (9%)
Query: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
++LRG PF+ +V+ FL P PV + VR+ G TG F F+ EE + AL
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPVA-----IRIVRNAHGNKTGYIFVDFSNEEEVKQAL 350
Query: 410 RRHKGMLGKRYIELFRS----TAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD 465
+ ++ +G RYIE+FR T + + G +L LA +GR
Sbjct: 351 KCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEE-----EEDLAE-SGR- 403
Query: 466 CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAA 525
+ +R LPYT+T ED+ + H + + + +P G AFI E A+ A
Sbjct: 404 -LFVRNLPYTSTEEDLEKLFSKYGPLSELH--YPIDSLTKKPKGFAFITFMFPEHAVKAY 460
Query: 526 QRCHKKVMKERYVEVVPCSTEE 547
+V + R + V+P + ++
Sbjct: 461 SEVDGQVFQGRMLHVLPSTIKK 482
Score = 42.7 bits (99), Expect = 0.001
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 249 VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308
V+ RG P+ ++++V F L + + NA G + G + F + E+ AL+ +
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPV--AIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 309 KHHMGVRYIEVYK 321
+ +MG RYIEV++
Sbjct: 354 REYMGGRYIEVFR 366
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 58.9 bits (141), Expect = 2e-08
Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 19/202 (9%)
Query: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
++LRG PF+ +V+ FL P PV + VR+ G TG F F+ EE + AL
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPVA-----IRIVRNAHGNKTGYIFVDFSNEEEVKQAL 350
Query: 410 RRHKGMLGKRYIELFRS----TAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD 465
+ ++ +G RYIE+FR T + + G +L LA +GR
Sbjct: 351 KCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEE-----EEDLAE-SGR- 403
Query: 466 CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAA 525
+ +R LPYT+T ED+ + H + + + +P G AFI E A+ A
Sbjct: 404 -LFVRNLPYTSTEEDLEKLFSKYGPLSELH--YPIDSLTKKPKGFAFITFMFPEHAVKAY 460
Query: 526 QRCHKKVMKERYVEVVPCSTEE 547
+V + R + V+P + ++
Sbjct: 461 SEVDGQVFQGRMLHVLPSTIKK 482
Score = 42.7 bits (99), Expect = 0.001
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 249 VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308
V+ RG P+ ++++V F L + + NA G + G + F + E+ AL+ +
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPV--AIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 309 KHHMGVRYIEVYK 321
+ +MG RYIEV++
Sbjct: 354 REYMGGRYIEVFR 366
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 58.9 bits (141), Expect = 2e-08
Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 19/202 (9%)
Query: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
++LRG PF+ +V+ FL P PV + VR+ G TG F F+ EE + AL
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPVA-----IRIVRNAHGNKTGYIFVDFSNEEEVKQAL 350
Query: 410 RRHKGMLGKRYIELFRS----TAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD 465
+ ++ +G RYIE+FR T + + G +L LA +GR
Sbjct: 351 KCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEE-----EEDLAE-SGR- 403
Query: 466 CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAA 525
+ +R LPYT+T ED+ + H + + + +P G AFI E A+ A
Sbjct: 404 -LFVRNLPYTSTEEDLEKLFSKYGPLSELH--YPIDSLTKKPKGFAFITFMFPEHAVKAY 460
Query: 526 QRCHKKVMKERYVEVVPCSTEE 547
+V + R + V+P + ++
Sbjct: 461 SEVDGQVFQGRMLHVLPSTIKK 482
Score = 42.7 bits (99), Expect = 0.001
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 249 VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308
V+ RG P+ ++++V F L + + NA G + G + F + E+ AL+ +
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPV--AIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 309 KHHMGVRYIEVYK 321
+ +MG RYIEV++
Sbjct: 354 REYMGGRYIEVFR 366
>gi|239751395 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 306
Score = 46.6 bits (109), Expect = 8e-05
Identities = 46/156 (29%), Positives = 58/156 (37%), Gaps = 9/156 (5%)
Query: 563 SPPPCKLPCLSPPTYTTFQATPTLIPTETAALYPSS--ALLPAARVPAAPTPVAYYPGPA 620
S PP P +P T TPTL P+ T L PSS L P + + TP P
Sbjct: 45 SSPPTLTPSNTPT--LTPSNTPTLTPSSTPTLTPSSTPTLTPQPILTRSSTPTLTPSSPP 102
Query: 621 TQLYLNYTAYYPS--PPVSPTTVGYLT---TPTAALASAPTSVLSQSGALVRMQGVPYTA 675
T N PS P ++P+ LT TPT +S PT S L R T
Sbjct: 103 TLTPSNTPTLTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTP 162
Query: 676 GMKDLLSVFQAYQLPADDYTSLMPVGDPPRTVLQAP 711
+ +L+ L +L P P T P
Sbjct: 163 SSRPILTRSSTPTLTPSSTPTLTPSSTPTLTPSSTP 198
Score = 40.8 bits (94), Expect = 0.004
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 14/130 (10%)
Query: 563 SPP---PCKLPCLSP---PTYTTFQATPTLIPTETAALYPSSA--LLPAAR--VPAAPTP 612
SPP P P L+P PT T TPTL P+ T L PSS L P++R + + TP
Sbjct: 100 SPPTLTPSNTPTLTPSNTPTLTPSN-TPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTP 158
Query: 613 VAYYPGPATQLYLNYTAYYPSPPVSPTTVGYLTTPTAALASAPTSVLSQSGALVRMQGVP 672
P+++ L ++ P S T+ +TPT +S PT S L R
Sbjct: 159 TLT---PSSRPILTRSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPT 215
Query: 673 YTAGMKDLLS 682
T + +L+
Sbjct: 216 LTPSSRPILT 225
Score = 37.4 bits (85), Expect = 0.049
Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 10/144 (6%)
Query: 573 SPPTYTTFQATPTLIPTETAALYPSSA--LLPAARVPAAPTPVAYYPGPATQLYLNYTAY 630
SPPT T TPTL P+ T L PS+ L P++ P+ P+++ L ++
Sbjct: 100 SPPTLTPSN-TPTLTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPTLT-PSSRPILTRSS- 156
Query: 631 YPSPPVSPTTVGYLT---TPTAALASAPTSVLSQSGALVRMQGVPYTAGMKDLLSVFQAY 687
+P ++P++ LT TPT +S PT S + L T + +L+
Sbjct: 157 --TPTLTPSSRPILTRSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTP 214
Query: 688 QLPADDYTSLMPVGDPPRTVLQAP 711
L L P P T P
Sbjct: 215 TLTPSSRPILTPSSTPTLTPSSRP 238
Score = 33.9 bits (76), Expect = 0.54
Identities = 39/148 (26%), Positives = 54/148 (36%), Gaps = 19/148 (12%)
Query: 566 PCKLPCLSPPTYTTFQATPTLIPTETAALYPSSALLPAARVPAAPTPVAYYPGPATQLYL 625
P P L+P + PTL P+ T L PSS + + + TP P T
Sbjct: 4 PSNTPTLTP------SSPPTLTPSSTPTLTPSSQPI----LTRSSTPTLTPSSPPTLTPS 53
Query: 626 NYTAYYPS--PPVSPTTVGYLTTPTAALASAPTSVLSQSGALVRMQGVPYTAGMKDLLSV 683
N PS P ++P+ +TPT +S PT L+ L R T L+
Sbjct: 54 NTPTLTPSNTPTLTPS-----STPTLTPSSTPT--LTPQPILTRSSTPTLTPSSPPTLTP 106
Query: 684 FQAYQLPADDYTSLMPVGDPPRTVLQAP 711
L + +L P P T P
Sbjct: 107 SNTPTLTPSNTPTLTPSNTPTLTPSSTP 134
Score = 32.7 bits (73), Expect = 1.2
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 570 PCLSPPTYTTF--QATPTLIPTETAALYPSS----------ALLPAARVPAAPTPVAYYP 617
P L+P + T +TPTL P+ T L PSS L P++R P+
Sbjct: 174 PTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILTPSSTPTLT 233
Query: 618 GPATQLYLNYTAYYPSPPVSPTTVGYLTTPTAALASAPTSVLSQSGAL 665
P+++ L ++ P S T+ TPT ++ PT S + L
Sbjct: 234 -PSSRPILTRSSTPTLTPSSTPTLTPSNTPTLTPSNTPTLTPSNTPTL 280
Score = 30.4 bits (67), Expect = 6.0
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 585 TLIPTETAALYPSSALLPAARVPAAPTPVAYYPGPATQLYLNYTAYYPSPPVSPTTVGYL 644
TL P+ T L PSS P + PT P++Q L ++ P SP T+
Sbjct: 1 TLTPSNTPTLTPSSP--PTLTPSSTPTLT-----PSSQPILTRSSTPTLTPSSPPTLTPS 53
Query: 645 TTPTAALASAPTSVLSQSGAL 665
TPT ++ PT S + L
Sbjct: 54 NTPTLTPSNTPTLTPSSTPTL 74
>gi|239745904 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 306
Score = 46.6 bits (109), Expect = 8e-05
Identities = 46/156 (29%), Positives = 58/156 (37%), Gaps = 9/156 (5%)
Query: 563 SPPPCKLPCLSPPTYTTFQATPTLIPTETAALYPSS--ALLPAARVPAAPTPVAYYPGPA 620
S PP P +P T TPTL P+ T L PSS L P + + TP P
Sbjct: 45 SSPPTLTPSNTPT--LTPSNTPTLTPSSTPTLTPSSTPTLTPQPILTRSSTPTLTPSSPP 102
Query: 621 TQLYLNYTAYYPS--PPVSPTTVGYLT---TPTAALASAPTSVLSQSGALVRMQGVPYTA 675
T N PS P ++P+ LT TPT +S PT S L R T
Sbjct: 103 TLTPSNTPTLTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTP 162
Query: 676 GMKDLLSVFQAYQLPADDYTSLMPVGDPPRTVLQAP 711
+ +L+ L +L P P T P
Sbjct: 163 SSRPILTRSSTPTLTPSSTPTLTPSSTPTLTPSSTP 198
Score = 40.8 bits (94), Expect = 0.004
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 14/130 (10%)
Query: 563 SPP---PCKLPCLSP---PTYTTFQATPTLIPTETAALYPSSA--LLPAAR--VPAAPTP 612
SPP P P L+P PT T TPTL P+ T L PSS L P++R + + TP
Sbjct: 100 SPPTLTPSNTPTLTPSNTPTLTPSN-TPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTP 158
Query: 613 VAYYPGPATQLYLNYTAYYPSPPVSPTTVGYLTTPTAALASAPTSVLSQSGALVRMQGVP 672
P+++ L ++ P S T+ +TPT +S PT S L R
Sbjct: 159 TLT---PSSRPILTRSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPT 215
Query: 673 YTAGMKDLLS 682
T + +L+
Sbjct: 216 LTPSSRPILT 225
Score = 37.4 bits (85), Expect = 0.049
Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 10/144 (6%)
Query: 573 SPPTYTTFQATPTLIPTETAALYPSSA--LLPAARVPAAPTPVAYYPGPATQLYLNYTAY 630
SPPT T TPTL P+ T L PS+ L P++ P+ P+++ L ++
Sbjct: 100 SPPTLTPSN-TPTLTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPTLT-PSSRPILTRSS- 156
Query: 631 YPSPPVSPTTVGYLT---TPTAALASAPTSVLSQSGALVRMQGVPYTAGMKDLLSVFQAY 687
+P ++P++ LT TPT +S PT S + L T + +L+
Sbjct: 157 --TPTLTPSSRPILTRSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTP 214
Query: 688 QLPADDYTSLMPVGDPPRTVLQAP 711
L L P P T P
Sbjct: 215 TLTPSSRPILTPSSTPTLTPSSRP 238
Score = 33.9 bits (76), Expect = 0.54
Identities = 39/148 (26%), Positives = 54/148 (36%), Gaps = 19/148 (12%)
Query: 566 PCKLPCLSPPTYTTFQATPTLIPTETAALYPSSALLPAARVPAAPTPVAYYPGPATQLYL 625
P P L+P + PTL P+ T L PSS + + + TP P T
Sbjct: 4 PSNTPTLTP------SSPPTLTPSSTPTLTPSSQPI----LTRSSTPTLTPSSPPTLTPS 53
Query: 626 NYTAYYPS--PPVSPTTVGYLTTPTAALASAPTSVLSQSGALVRMQGVPYTAGMKDLLSV 683
N PS P ++P+ +TPT +S PT L+ L R T L+
Sbjct: 54 NTPTLTPSNTPTLTPS-----STPTLTPSSTPT--LTPQPILTRSSTPTLTPSSPPTLTP 106
Query: 684 FQAYQLPADDYTSLMPVGDPPRTVLQAP 711
L + +L P P T P
Sbjct: 107 SNTPTLTPSNTPTLTPSNTPTLTPSSTP 134
Score = 32.7 bits (73), Expect = 1.2
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 570 PCLSPPTYTTF--QATPTLIPTETAALYPSS----------ALLPAARVPAAPTPVAYYP 617
P L+P + T +TPTL P+ T L PSS L P++R P+
Sbjct: 174 PTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILTPSSTPTLT 233
Query: 618 GPATQLYLNYTAYYPSPPVSPTTVGYLTTPTAALASAPTSVLSQSGAL 665
P+++ L ++ P S T+ TPT ++ PT S + L
Sbjct: 234 -PSSRPILTRSSTPTLTPSSTPTLTPSNTPTLTPSNTPTLTPSNTPTL 280
Score = 30.4 bits (67), Expect = 6.0
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 585 TLIPTETAALYPSSALLPAARVPAAPTPVAYYPGPATQLYLNYTAYYPSPPVSPTTVGYL 644
TL P+ T L PSS P + PT P++Q L ++ P SP T+
Sbjct: 1 TLTPSNTPTLTPSSP--PTLTPSSTPTLT-----PSSQPILTRSSTPTLTPSSPPTLTPS 53
Query: 645 TTPTAALASAPTSVLSQSGAL 665
TPT ++ PT S + L
Sbjct: 54 NTPTLTPSNTPTLTPSSTPTL 74
>gi|169211436 PREDICTED: hypothetical protein [Homo sapiens]
Length = 280
Score = 46.2 bits (108), Expect = 1e-04
Identities = 47/158 (29%), Positives = 62/158 (39%), Gaps = 13/158 (8%)
Query: 566 PCKLPCLSP---PTYTTFQATPTLIPTETAALYPSSA--LLPAARVPAAP--TPVAYYPG 618
PC P L+P PT T +TPTL P+ T L PSS L P++ P TP
Sbjct: 80 PCSTPTLTPSNTPTLTP-SSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSS 138
Query: 619 PATQLYLNYTAYYPS--PPVSPTTVGYLT---TPTAALASAPTSVLSQSGALVRMQGVPY 673
T + PS P ++P++ LT TPT +S PT S L R
Sbjct: 139 TPTLTRSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTL 198
Query: 674 TAGMKDLLSVFQAYQLPADDYTSLMPVGDPPRTVLQAP 711
T L+ L + +L+P P T P
Sbjct: 199 TPSSTPTLTPSSTPTLTPSNTPTLIPSSTPTLTPSSTP 236
Score = 40.0 bits (92), Expect = 0.008
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 5/145 (3%)
Query: 566 PCKLPCLSPPTYTTF--QATPTLIPTETAALYPSSA--LLPAARVPAAPTPVAYYPGPAT 621
P P L+P + T +TPTL P+ T L PSS L P++ P+ P++
Sbjct: 128 PSSTPTLTPSSTPTLTRSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLT-PSS 186
Query: 622 QLYLNYTAYYPSPPVSPTTVGYLTTPTAALASAPTSVLSQSGALVRMQGVPYTAGMKDLL 681
+ L ++ P S T+ +TPT ++ PT + S + L T + L
Sbjct: 187 RPILTRSSTPTLTPSSTPTLTPSSTPTLTPSNTPTLIPSSTPTLTPSSTPTLTPSSRPTL 246
Query: 682 SVFQAYQLPADDYTSLMPVGDPPRT 706
+ L +L P P T
Sbjct: 247 TRSSTPTLTPSSTPTLTPSSTPTLT 271
Score = 36.6 bits (83), Expect = 0.083
Identities = 47/173 (27%), Positives = 61/173 (35%), Gaps = 14/173 (8%)
Query: 553 MGGTLGRSGMSPP---PCKLPCLSPPTYTTFQ--ATPTLIPTETAALYPSS--ALLPAAR 605
M G G M P P P L+P T +TPTL P T L PS+ L P++
Sbjct: 40 MTGPYGPREMGTPTLTPSSPPTLTPSNTPTLTPCSTPTLTPCSTPTLTPSNTPTLTPSST 99
Query: 606 VPAAP--TPVAYYPGPATQLYLNYTAYYPS--PPVSPTTVGYLT---TPTAALASAPTSV 658
P TP T + PS P ++P++ LT TPT +S PT
Sbjct: 100 PTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTRSSTPTLTPSSTPTLT 159
Query: 659 LSQSGALVRMQGVPYTAGMKDLLSVFQAYQLPADDYTSLMPVGDPPRTVLQAP 711
S + L T L+ L +L P P T P
Sbjct: 160 PSSTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSTPTLTPSSTP 212
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 45.4 bits (106), Expect = 2e-04
Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 563 SPPPCKLPCLSPPTYTTFQATPTLIPTE--TAALYP--SSALLPAARVPAAPTPVAYYPG 618
+PPP P SPPT TT PT P+ T + P S+ LP P+ P P
Sbjct: 1595 TPPPTTTP--SPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPP 1652
Query: 619 PATQLYLNYTAYYPSPPVSPTTVGY-LTTPTAALASAPT 656
P T T PSPP++ TT TTP++ + + P+
Sbjct: 1653 PTTTPSPPTTTT-PSPPITTTTTPPPTTTPSSPITTTPS 1690
Score = 42.0 bits (97), Expect = 0.002
Identities = 34/101 (33%), Positives = 40/101 (39%), Gaps = 19/101 (18%)
Query: 565 PPCKLPCLSPPTYTTFQATPTLIPTE--TAALYP--SSALLPAARVPAAPTPVAYYPGPA 620
PP P SPPT TT PT P+ T + P S+ LP P+ P P P
Sbjct: 1518 PPTTTP--SPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPT 1575
Query: 621 TQLYLNYTAYYPSPPV----SPTTVGYLTTPTAALASAPTS 657
T PSPP SP T+ T P S PT+
Sbjct: 1576 TT---------PSPPTTTTPSPPTITTTTPPPTTTPSPPTT 1607
Score = 41.2 bits (95), Expect = 0.003
Identities = 34/100 (34%), Positives = 41/100 (41%), Gaps = 19/100 (19%)
Query: 565 PPCKLPCLSPPTYTTFQATPTLIPTE--TAALYP--SSALLPAARVPAAPTPVAYYPGPA 620
PP P SPPT TT PT P+ T + P S+ LP P+ PT P P
Sbjct: 1479 PPTTTP--SPPTTTTTTPPPTTTPSPPTTTPITPPASTTTLPPTTTPSPPTTTTTTPPPT 1536
Query: 621 TQLYLNYTAYYPSPPVSPTTVGYLTTPTAALASAPTSVLS 660
T PSPP T +T PT+ PT+ S
Sbjct: 1537 TT---------PSPP----TTTPITPPTSTTTLPPTTTPS 1563
Score = 40.0 bits (92), Expect = 0.008
Identities = 29/88 (32%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Query: 573 SPPTYTTFQATPTLIPTETAALYPSSALLPAARVPAAPTPVAYYPGPATQLYLNYTAYYP 632
SPPT TP+ PT T L P++ P P P P T P
Sbjct: 1400 SPPT-----TTPSPPPTSTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPPPTTTP 1454
Query: 633 SPPVSPTTVGYLTTPTAALASAPTSVLS 660
SPP+S TT T P S PT+ S
Sbjct: 1455 SPPISTTT----TPPPTTTPSPPTTTPS 1478
Score = 39.3 bits (90), Expect = 0.013
Identities = 35/109 (32%), Positives = 44/109 (40%), Gaps = 23/109 (21%)
Query: 563 SPPPCKLPC------LSPPTYTTF---QATPTLIPTETAALYPSSA-LLPAARVPAAPTP 612
+PPP P ++PPT TT TP+ PT T P++ P P+ PT
Sbjct: 1532 TPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTI 1591
Query: 613 VAYYPGPATQLYLNYTAYYPSPPVSPTTVGYLTT----PTAALASAPTS 657
P P T PSPP + TT TT PT + PTS
Sbjct: 1592 TTTTPPPTTT---------PSPPTTTTTTPPPTTTPSPPTTTPITPPTS 1631
Score = 39.3 bits (90), Expect = 0.013
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 563 SPPPCKLPCLSPPTYTTFQATPTLIPTETAALYPSSALLPAARVPAAPTPVAYYPGPATQ 622
SPP P SPPT TT PT P+ ++ P P+ PT P P +
Sbjct: 1579 SPPTTTTP--SPPTITTTTPPPTTTPSPPTT---TTTTPPPTTTPSPPTTTPITP-PTST 1632
Query: 623 LYLNYTAYYPSPPVSPTTVGYLTTPTAALASAPT 656
L T PP + TT TTP+ + P+
Sbjct: 1633 TTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPS 1666
Score = 38.1 bits (87), Expect = 0.029
Identities = 35/102 (34%), Positives = 43/102 (42%), Gaps = 12/102 (11%)
Query: 563 SPPPCKLPCLSPPTYTTFQ---ATPTLIPTETAALYPSSALL-PAARVPAAPTPVAYYPG 618
+PPP P SPPT T +T TL PT T + ++ P P+ PT P
Sbjct: 1493 TPPPTTTP--SPPTTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPP 1550
Query: 619 PATQLYLNYTAYYPSPPVSPTTVGYLTT----PTAALASAPT 656
+T T PSPP + TT TT PT S PT
Sbjct: 1551 TSTTTLPPTTT--PSPPPTTTTTPPPTTTPSPPTTTTPSPPT 1590
Score = 38.1 bits (87), Expect = 0.029
Identities = 30/102 (29%), Positives = 37/102 (36%), Gaps = 10/102 (9%)
Query: 563 SPPPCKLPCLSPPTYTTFQATPTLIPTETAALYPSSALLPAARVPAAPTPVAYYPGPATQ 622
SPP P SPP TT PT P+ PS P P+P P T
Sbjct: 1658 SPPTTTTP--SPPITTTTTPPPTTTPSSPITTTPS----PPTTTMTTPSPTTTPSSPITT 1711
Query: 623 LYLNYTAYYPSPPVSPTTVGYLTT----PTAALASAPTSVLS 660
+ PSPP + T TT PT + + P + S
Sbjct: 1712 TTTPSSTTTPSPPPTTMTTPSPTTTPSPPTTTMTTLPPTTTS 1753
Score = 37.7 bits (86), Expect = 0.037
Identities = 31/105 (29%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 563 SPPPCKLPCLSPPTYTTFQATPTLIPT-----------ETAALYPSSALLPAARVPAAPT 611
+PPP P SPP TT PT P+ T P++ P P+ PT
Sbjct: 1431 TPPPTTTP--SPPITTTTTPPPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPT 1488
Query: 612 PVAYYPGPATQLYLNYTAYYPSPPVSPTTVGYLTTPTAALASAPT 656
P P T T +PP S TT+ TTP+ + T
Sbjct: 1489 TTTTTPPPTTTPSPPTTTPI-TPPASTTTLPPTTTPSPPTTTTTT 1532
Score = 37.4 bits (85), Expect = 0.049
Identities = 36/99 (36%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 563 SPPPCKLPCLSPPTYTTFQATPTLIPTETAALYPSSALLPAARVPAAPTPVAYYPGPATQ 622
+PPP P SPPT T T T P T P P P+ PT P PA+
Sbjct: 1463 TPPPTTTP--SPPTTTPSPPTTTPSPPTTTTTTP-----PPTTTPSPPTTTPITP-PAST 1514
Query: 623 LYLNYTAYYPSPPVSPTTVG-YLTT---PTAALASAPTS 657
L T PSPP + TT TT PT + PTS
Sbjct: 1515 TTLPPTTT-PSPPTTTTTTPPPTTTPSPPTTTPITPPTS 1552
Score = 37.4 bits (85), Expect = 0.049
Identities = 30/101 (29%), Positives = 37/101 (36%), Gaps = 20/101 (19%)
Query: 565 PPCKLPCLSPPTYTTFQATPTLIPTETAALYPSSALL-----PAARVPAAPTPVAYYPGP 619
PP P SPP TT PT P+ PS + P P+ PT P P
Sbjct: 1557 PPTTTP--SPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPP 1614
Query: 620 ATQLYLNYTAYYPSPPVSPTTVGYLTTPTAALASAPTSVLS 660
T PSPP + +T PT+ PT+ S
Sbjct: 1615 TTT---------PSPPTTTP----ITPPTSTTTLPPTTTPS 1642
Score = 37.0 bits (84), Expect = 0.064
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 19/103 (18%)
Query: 563 SPPPCKLPCLSPPTYTTFQATPTLIPTETAALYPSSALLPAARVPAAPTPVAYYPGPATQ 622
+PPP P SPPT TT +P + T T P P++ + P+P P T
Sbjct: 1650 TPPPTTTP--SPPTTTT--PSPPITTTTT----PPPTTTPSSPITTTPSP------PTTT 1695
Query: 623 LYLNYTAYYPSPPVSPTTVGYLTT-----PTAALASAPTSVLS 660
+ PS P++ TT TT PT +PT+ S
Sbjct: 1696 MTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPSPTTTPS 1738
Score = 35.8 bits (81), Expect = 0.14
Identities = 33/111 (29%), Positives = 39/111 (35%), Gaps = 28/111 (25%)
Query: 563 SPPPCKLPCL------SPPTYTTFQATPTLIPTE--TAALYPSSALLPAARVPAA----- 609
SPPP L SPPT TT PT P+ T P P+ +
Sbjct: 1407 SPPPTSTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPPPTTTPSPPISTTTTPPP 1466
Query: 610 ---PTPVAYYPGPATQLYLNYTAYYPSPPVSPTTVGYLTTPTAALASAPTS 657
P+P P P T PSPP + TT T P S PT+
Sbjct: 1467 TTTPSPPTTTPSPPTTT--------PSPPTTTTT----TPPPTTTPSPPTT 1505
Score = 35.0 bits (79), Expect = 0.24
Identities = 30/101 (29%), Positives = 38/101 (37%), Gaps = 22/101 (21%)
Query: 563 SPPPCKLPCL------SPPTYTTFQATPTLIPTE--TAALYPSSALLPAARVPAAPTPVA 614
+PPP P SPPT T +PT P+ T PSS P+ P
Sbjct: 1674 TPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTT-----TPSPPPTTM 1728
Query: 615 YYPGPATQLYLNYTAYYPSPPVSPTTVGYLTTPTAALASAP 655
P P T PSPP + T TT ++ L + P
Sbjct: 1729 TTPSPTTT---------PSPPTTTMTTLPPTTTSSPLTTTP 1760
Score = 33.9 bits (76), Expect = 0.54
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 20/142 (14%)
Query: 564 PPPCKLPCLSPPTYTTFQATPTLIPTETAALYPSSALLPAARVPAAPTPVA----YYPGP 619
PP P S T + + TL+ T A+ +S P+ P APT + P P
Sbjct: 4215 PPESSTPQTSRSTSSPLTESTTLLSTLPPAIEMTSTAPPST--PTAPTTTSGGHTLSPPP 4272
Query: 620 ATQLYLNYTAYYPSPPVSPTTVGYLTTPTAAL-------ASAPTSVLSQSGALVRMQGV- 671
+T T P P TT G + PT + A PT + +++R G+
Sbjct: 4273 ST------TTSPPGTPTRGTTTGSSSAPTPSTVQTTTTSAWTPTPTPLSTPSIIRTTGLR 4326
Query: 672 PYTAGMKDLLSVFQAYQLPADD 693
PY + + + Y P ++
Sbjct: 4327 PYPSSVLICCVLNDTYYAPGEE 4348
Score = 32.3 bits (72), Expect = 1.6
Identities = 27/91 (29%), Positives = 32/91 (35%), Gaps = 8/91 (8%)
Query: 573 SPPTYTTFQATPTLIPTETAALYPSSALLP---AARVPAAPTPVAYYPGPATQLYLNYTA 629
+PPT T T T+ PT T + P V PTP P T T
Sbjct: 1894 TPPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQT-PTTTPITTTTT 1952
Query: 630 YYPSP----PVSPTTVGYLTTPTAALASAPT 656
P+P +PTT TT T PT
Sbjct: 1953 VTPTPTPTGTQTPTTTPITTTTTVTPTPTPT 1983
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 42.0 bits (97), Expect = 0.002
Identities = 21/38 (55%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 3 PPPPPPPPPGPDPAADPAADPCPWPGSLVVLFGATAGA 40
PPPPPPPPP P AA PA+ P P P L G GA
Sbjct: 82 PPPPPPPPPPPASAAAPASGP-PAPPGLAAGPGPAGGA 118
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,705,629
Number of Sequences: 37866
Number of extensions: 1786222
Number of successful extensions: 28236
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 241
Number of HSP's that attempted gapping in prelim test: 17458
Number of HSP's gapped (non-prelim): 7604
length of query: 717
length of database: 18,247,518
effective HSP length: 110
effective length of query: 607
effective length of database: 14,082,258
effective search space: 8547930606
effective search space used: 8547930606
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.