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Search of human proteins with 45643133
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|45643133 oxidored-nitro domain-containing protein isoform 1
[Homo sapiens]
(389 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|45643133 oxidored-nitro domain-containing protein isoform 1 [... 772 0.0
gi|45643131 oxidored-nitro domain-containing protein isoform 2 [... 332 4e-91
gi|4507793 ubiquitin-conjugating enzyme E2N [Homo sapiens] 33 0.44
gi|149363695 hypothetical protein LOC25943 [Homo sapiens] 31 2.2
gi|61175265 ubiquitin-conjugating enzyme E2N-like [Homo sapiens] 31 2.2
gi|82830424 gon-4-like isoform a [Homo sapiens] 30 2.8
gi|82830428 gon-4-like isoform b [Homo sapiens] 30 2.8
gi|4758540 HNK-1 sulfotransferase [Homo sapiens] 30 2.8
gi|58530840 desmoplakin isoform I [Homo sapiens] 30 3.7
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 30 4.9
gi|157738615 coiled-coil alpha-helical rod protein 1 isoform 1 [... 30 4.9
gi|157738613 coiled-coil alpha-helical rod protein 1 isoform 2 [... 30 4.9
gi|157738611 coiled-coil alpha-helical rod protein 1 isoform 3 [... 30 4.9
gi|206597522 ArfGAP with SH3 domain, ankyrin repeat and PH domai... 29 6.3
gi|4502249 ArfGAP with SH3 domain, ankyrin repeat and PH domain ... 29 6.3
gi|56550035 colon carcinoma related protein [Homo sapiens] 29 6.3
gi|18093112 ABT1-associated protein [Homo sapiens] 29 6.3
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 29 6.3
gi|226246554 hypothetical protein LOC643677 [Homo sapiens] 29 8.3
gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sap... 29 8.3
gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sap... 29 8.3
gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sap... 29 8.3
gi|160948610 E3 ubiquitin-protein ligase UBR3 [Homo sapiens] 29 8.3
>gi|45643133 oxidored-nitro domain-containing protein isoform 1
[Homo sapiens]
Length = 389
Score = 772 bits (1994), Expect = 0.0
Identities = 389/389 (100%), Positives = 389/389 (100%)
Query: 1 MSVRTLPLLFLNLGGEMLYILDQRLRAQNIPGDKARKDEWTEVDRKRVLNDIISTMFNRK 60
MSVRTLPLLFLNLGGEMLYILDQRLRAQNIPGDKARKDEWTEVDRKRVLNDIISTMFNRK
Sbjct: 1 MSVRTLPLLFLNLGGEMLYILDQRLRAQNIPGDKARKDEWTEVDRKRVLNDIISTMFNRK 60
Query: 61 FMEELFKPQELYSKKALRTVYERLAHASIMKLNQASMDKLYDLMTMAFKYQVLLCPRPKD 120
FMEELFKPQELYSKKALRTVYERLAHASIMKLNQASMDKLYDLMTMAFKYQVLLCPRPKD
Sbjct: 61 FMEELFKPQELYSKKALRTVYERLAHASIMKLNQASMDKLYDLMTMAFKYQVLLCPRPKD 120
Query: 121 VLLVTFNHLDTIKGFIRDSPTILQQVDETLRQLTEIYGGLSAGEFQLIRQTLLIFFQDLH 180
VLLVTFNHLDTIKGFIRDSPTILQQVDETLRQLTEIYGGLSAGEFQLIRQTLLIFFQDLH
Sbjct: 121 VLLVTFNHLDTIKGFIRDSPTILQQVDETLRQLTEIYGGLSAGEFQLIRQTLLIFFQDLH 180
Query: 181 IRVSMFLKDKVQNNNGRFVLPVSGPVPWGTEVPGLIRMFNNKGEEVKRIEFKHGGNYVPA 240
IRVSMFLKDKVQNNNGRFVLPVSGPVPWGTEVPGLIRMFNNKGEEVKRIEFKHGGNYVPA
Sbjct: 181 IRVSMFLKDKVQNNNGRFVLPVSGPVPWGTEVPGLIRMFNNKGEEVKRIEFKHGGNYVPA 240
Query: 241 PKEGSFELYGDRVLKLGTNMYSVNQPVETHVSGSSKNLASWTQESIAPNPLAKEELNFLA 300
PKEGSFELYGDRVLKLGTNMYSVNQPVETHVSGSSKNLASWTQESIAPNPLAKEELNFLA
Sbjct: 241 PKEGSFELYGDRVLKLGTNMYSVNQPVETHVSGSSKNLASWTQESIAPNPLAKEELNFLA 300
Query: 301 RLMGGMEIKKPSGPEPGFRLNLFTTDEEEEQAALTRPEELSYEVINIQATQDQQRSEELA 360
RLMGGMEIKKPSGPEPGFRLNLFTTDEEEEQAALTRPEELSYEVINIQATQDQQRSEELA
Sbjct: 301 RLMGGMEIKKPSGPEPGFRLNLFTTDEEEEQAALTRPEELSYEVINIQATQDQQRSEELA 360
Query: 361 RIMGEFEITEQPRLSTSKGDDLLAMMDEL 389
RIMGEFEITEQPRLSTSKGDDLLAMMDEL
Sbjct: 361 RIMGEFEITEQPRLSTSKGDDLLAMMDEL 389
>gi|45643131 oxidored-nitro domain-containing protein isoform 2
[Homo sapiens]
Length = 223
Score = 332 bits (851), Expect = 4e-91
Identities = 174/188 (92%), Positives = 174/188 (92%), Gaps = 10/188 (5%)
Query: 1 MSVRTLPLLFLNLGGEMLYILDQRLRAQNIPGDKARKDEWTEVDRKRVLNDIISTMFNRK 60
MSVRTLPLLFLNLGGEMLYILDQRLRAQNIPGDKARK VLNDIISTMFNRK
Sbjct: 1 MSVRTLPLLFLNLGGEMLYILDQRLRAQNIPGDKARK----------VLNDIISTMFNRK 50
Query: 61 FMEELFKPQELYSKKALRTVYERLAHASIMKLNQASMDKLYDLMTMAFKYQVLLCPRPKD 120
FMEELFKPQELYSKKALRTVYERLAHASIMKLNQASMDKLYDLMTMAFKYQVLLCPRPKD
Sbjct: 51 FMEELFKPQELYSKKALRTVYERLAHASIMKLNQASMDKLYDLMTMAFKYQVLLCPRPKD 110
Query: 121 VLLVTFNHLDTIKGFIRDSPTILQQVDETLRQLTEIYGGLSAGEFQLIRQTLLIFFQDLH 180
VLLVTFNHLDTIKGFIRDSPTILQQVDETLRQLTEIYGGLSAGEFQLIRQTLLIFFQDLH
Sbjct: 111 VLLVTFNHLDTIKGFIRDSPTILQQVDETLRQLTEIYGGLSAGEFQLIRQTLLIFFQDLH 170
Query: 181 IRVSMFLK 188
IR F K
Sbjct: 171 IRRECFWK 178
>gi|4507793 ubiquitin-conjugating enzyme E2N [Homo sapiens]
Length = 152
Score = 33.1 bits (74), Expect = 0.44
Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 17/113 (15%)
Query: 23 QRLRAQNIPGDKARKDEWTEVDRKRVLNDII-----STMFNRKFMEELFKPQELYSKKAL 77
QRL A+ +PG KA DE R + +I S F ELF P+E
Sbjct: 13 QRLLAEPVPGIKAEPDE----SNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPK 68
Query: 78 RTVYERLAHASIMKLNQASMDKLYD-------LMTMAFKYQVLL-CPRPKDVL 122
++ H ++ KL + +D L D + T+ Q LL P P D L
Sbjct: 69 VRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
>gi|149363695 hypothetical protein LOC25943 [Homo sapiens]
Length = 1177
Score = 30.8 bits (68), Expect = 2.2
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 210 TEVPGLIRMFNNKGEEVKRIEFKHG--GNYVP--APKEGSFELYGDRVLKLGTNMYSVNQ 265
TE+P L+ + ++ E R F HG +++ +P F L+G+ + N + N
Sbjct: 248 TEIPFLLELSESQAGEPFRSYFSHGMISSHITENSPNRQPFVLFGNHSTRENLNAGNFNF 307
Query: 266 PVETHVSGSSKNLASWTQESIA 287
P E H+ S+ S+ + +A
Sbjct: 308 PSEGHLVRSTGPGGSFAKHMVA 329
>gi|61175265 ubiquitin-conjugating enzyme E2N-like [Homo sapiens]
Length = 153
Score = 30.8 bits (68), Expect = 2.2
Identities = 39/149 (26%), Positives = 54/149 (36%), Gaps = 27/149 (18%)
Query: 23 QRLRAQNIPGDKARKDEWTEVDRKRVLNDII------STMFNRKFMEELFKPQELYSKKA 76
QRL A+ +PG KA DE R + +I S F EL +E
Sbjct: 13 QRLLAEPVPGIKAEPDE----SNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAP 68
Query: 77 LRTVYERLAHASIMKLNQASMDKLYD-------LMTMAFKYQVLL-CPRPKDVLLVTFNH 128
++ H ++ KL + S+D L D + T+ Q LL P P D L
Sbjct: 69 KVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPL------ 122
Query: 129 LDTIKGFIRDSPTILQQVDETLRQLTEIY 157
+ T Q ET R T +Y
Sbjct: 123 ---ANDVVEQWKTNEAQAIETARAWTRLY 148
>gi|82830424 gon-4-like isoform a [Homo sapiens]
Length = 2240
Score = 30.4 bits (67), Expect = 2.8
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 273 GSSKN-LASWTQESIAPNPLAKEELNFLARLMGGMEIKKPSGPEPGFRLNLFTTDEEEEQ 331
GSSKN L+S E +P K E + + G + P GPE G N +EEE+
Sbjct: 1409 GSSKNALSSMDPEVRLSSPPGKPEDS---SSVDGQSVGTPVGPETGGEKNGPEEEEEEDF 1465
Query: 332 AALTRPEE 339
LT+ EE
Sbjct: 1466 DDLTQDEE 1473
>gi|82830428 gon-4-like isoform b [Homo sapiens]
Length = 1529
Score = 30.4 bits (67), Expect = 2.8
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 273 GSSKN-LASWTQESIAPNPLAKEELNFLARLMGGMEIKKPSGPEPGFRLNLFTTDEEEEQ 331
GSSKN L+S E +P K E + + G + P GPE G N +EEE+
Sbjct: 1409 GSSKNALSSMDPEVRLSSPPGKPEDS---SSVDGQSVGTPVGPETGGEKNGPEEEEEEDF 1465
Query: 332 AALTRPEE 339
LT+ EE
Sbjct: 1466 DDLTQDEE 1473
>gi|4758540 HNK-1 sulfotransferase [Homo sapiens]
Length = 356
Score = 30.4 bits (67), Expect = 2.8
Identities = 48/201 (23%), Positives = 75/201 (37%), Gaps = 27/201 (13%)
Query: 61 FMEELFKPQELYSKKALRTVYERLAHASIMKLNQASMDKLYDLMTMAFKYQVLLCPRPKD 120
+ME L EL + L+H + K + D + + K+++L C PK
Sbjct: 81 YMERL----ELIRNVCRDDALKNLSHTPVSKF-------VLDRIFVCDKHKILFCQTPKV 129
Query: 121 VLLVTFNHLDTIKGFIRDSPTILQQV--DETLRQLTEIYGGLSAGEFQLIRQTLLIFF-- 176
L + G I + V D L + S E Q +T FF
Sbjct: 130 GNTQWKKVLIVLNGAFSSIEEIPENVVHDHEKNGLPRL-SSFSDAEIQKRLKTYFKFFIV 188
Query: 177 QDLHIRVSMFLKDKVQNNNGRFVLPVSGPVPWGTE--VPGLIRMFNNKGEEVKRIEFKHG 234
+D R+ KDK +N RF PW PG+IR + E + I+F+
Sbjct: 189 RDPFERLISAFKDKFVHNP-RFE-------PWYRHEIAPGIIRKYRRNRTETRGIQFEDF 240
Query: 235 GNYVPAPKEGSFEL-YGDRVL 254
Y+ P +L +GD ++
Sbjct: 241 VRYLGDPNHRWLDLQFGDHII 261
>gi|58530840 desmoplakin isoform I [Homo sapiens]
Length = 2871
Score = 30.0 bits (66), Expect = 3.7
Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 22/135 (16%)
Query: 23 QRLRAQNIPGDKARKDEWTEVDRKRVLNDIISTMFNRKFMEELFKPQELYSKKA--LRTV 80
+ L Q + +KA K++ E++R RVL T R++ EL K + Y+++ LR
Sbjct: 1151 ENLGWQKLESEKAIKEKEYEIERLRVLLQEEGTR-KREYENELAKVRNHYNEEMSNLRNK 1209
Query: 81 YERLAHASIMKLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTFNHLDTIKGFIRDSP 140
YE + + + + SM K D + N LD + RD
Sbjct: 1210 YETEINITKTTIKEISMQKEDDSKNLR-------------------NQLDRLSRENRDLK 1250
Query: 141 TILQQVDETLRQLTE 155
+ ++++++ Q TE
Sbjct: 1251 DEIVRLNDSILQATE 1265
>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
Length = 1979
Score = 29.6 bits (65), Expect = 4.9
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 321 NLFTTDEEEEQAALTRPEELSYEVINIQATQDQQRSEELARIMGEFEITEQP-RLSTSKG 379
+L + ++EE Q +L + YEVI AT+D EL + E EQ S S+
Sbjct: 432 SLLSQEKEELQMSLLKLNN-EYEVIKSTATRDISLDSELHDLRLNLEAKEQELNQSISEK 490
Query: 380 DDLLAMMDEL 389
+ L+A ++EL
Sbjct: 491 ETLIAEIEEL 500
>gi|157738615 coiled-coil alpha-helical rod protein 1 isoform 1
[Homo sapiens]
Length = 871
Score = 29.6 bits (65), Expect = 4.9
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 263 VNQPVETHVSGSSKNLASW----------TQESIAPNPLAKEELNFLARLMGGMEIKKPS 312
V Q +E + + ++LAS QES ++EL L G +K +
Sbjct: 636 VAQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVA 695
Query: 313 GPEPGFRLNLFTTDEEEEQAALTRPEEL-SYEVINIQATQDQQRSEELARIMGEFEITEQ 371
E R L T+ +A + + S I +A Q+++RS+EL R+ E E
Sbjct: 696 EVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEG 755
Query: 372 PRLS 375
RL+
Sbjct: 756 QRLA 759
>gi|157738613 coiled-coil alpha-helical rod protein 1 isoform 2
[Homo sapiens]
Length = 835
Score = 29.6 bits (65), Expect = 4.9
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 263 VNQPVETHVSGSSKNLASW----------TQESIAPNPLAKEELNFLARLMGGMEIKKPS 312
V Q +E + + ++LAS QES ++EL L G +K +
Sbjct: 600 VAQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVA 659
Query: 313 GPEPGFRLNLFTTDEEEEQAALTRPEEL-SYEVINIQATQDQQRSEELARIMGEFEITEQ 371
E R L T+ +A + + S I +A Q+++RS+EL R+ E E
Sbjct: 660 EVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEG 719
Query: 372 PRLS 375
RL+
Sbjct: 720 QRLA 723
>gi|157738611 coiled-coil alpha-helical rod protein 1 isoform 3
[Homo sapiens]
Length = 782
Score = 29.6 bits (65), Expect = 4.9
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 263 VNQPVETHVSGSSKNLASW----------TQESIAPNPLAKEELNFLARLMGGMEIKKPS 312
V Q +E + + ++LAS QES ++EL L G +K +
Sbjct: 547 VAQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVA 606
Query: 313 GPEPGFRLNLFTTDEEEEQAALTRPEEL-SYEVINIQATQDQQRSEELARIMGEFEITEQ 371
E R L T+ +A + + S I +A Q+++RS+EL R+ E E
Sbjct: 607 EVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEG 666
Query: 372 PRLS 375
RL+
Sbjct: 667 QRLA 670
>gi|206597522 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
isoform b [Homo sapiens]
Length = 961
Score = 29.3 bits (64), Expect = 6.3
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 17/134 (12%)
Query: 31 PGDKARKDEWTEVDR-------KRVLNDIISTMFN-RKFMEELFKPQELYSKKALRTVYE 82
P DKA KD T++ + L+ +I T + + EE+ K + + +
Sbjct: 145 PFDKAWKDYETKITKIEKEKKEHAKLHGMIRTEISGAEIAEEMEKERRFFQLQMCEY--- 201
Query: 83 RLAHASIMKLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTFNHLDTIKGFIRDSPTI 142
++K+N+ + K DL+ KY C +D L + +I+ D TI
Sbjct: 202 ------LLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVESLKPSIETLSTDLHTI 255
Query: 143 LQQVDETLRQLTEI 156
Q DE RQL ++
Sbjct: 256 KQAQDEERRQLIQL 269
>gi|4502249 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
isoform a [Homo sapiens]
Length = 1006
Score = 29.3 bits (64), Expect = 6.3
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 17/134 (12%)
Query: 31 PGDKARKDEWTEVDR-------KRVLNDIISTMFN-RKFMEELFKPQELYSKKALRTVYE 82
P DKA KD T++ + L+ +I T + + EE+ K + + +
Sbjct: 145 PFDKAWKDYETKITKIEKEKKEHAKLHGMIRTEISGAEIAEEMEKERRFFQLQMCEY--- 201
Query: 83 RLAHASIMKLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTFNHLDTIKGFIRDSPTI 142
++K+N+ + K DL+ KY C +D L + +I+ D TI
Sbjct: 202 ------LLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVESLKPSIETLSTDLHTI 255
Query: 143 LQQVDETLRQLTEI 156
Q DE RQL ++
Sbjct: 256 KQAQDEERRQLIQL 269
>gi|56550035 colon carcinoma related protein [Homo sapiens]
Length = 326
Score = 29.3 bits (64), Expect = 6.3
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 287 APNPLAKEELNFLARLMGGMEIKKPSGPEPGFRLNLFTTDEEEEQAALTRPEELSY 342
AP P +++L +++ +E+ PS E DEEEE+ +P E+ Y
Sbjct: 36 APQPGQQKKLAVFSKMQDSLEVTLPSKQEE--------EDEEEEEEEKDQPAEMEY 83
>gi|18093112 ABT1-associated protein [Homo sapiens]
Length = 851
Score = 29.3 bits (64), Expect = 6.3
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 309 KKPSGPEPGF-RLNLFTTDEEEEQAALTRPEELSYEVINIQATQDQQRSEELARIMGEFE 367
K SGP+ + N+ T+ E+E+ A PEE +E + +D R++E+ R +
Sbjct: 295 KSDSGPDLARGKGNIETSSEDEDDTADLFPEESGFEHAWRELDKDAPRADEITRRLAVCN 354
Query: 368 ITEQPRLSTSKGDDLLAMMD 387
+ + RL K DLLA+ +
Sbjct: 355 M-DWDRL---KAKDLLALFN 370
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 29.3 bits (64), Expect = 6.3
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 304 GGMEIKKPSGPEPGFR-LNLFTTDEEEEQAAL 334
G M+IKK S P PG + L LF + EE AA+
Sbjct: 660 GSMKIKKNSAPLPGEQPLQLFVENPSEEDAAI 691
>gi|226246554 hypothetical protein LOC643677 [Homo sapiens]
Length = 7081
Score = 28.9 bits (63), Expect = 8.3
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 304 GGMEIKKPSGPEPGFRLNLFTTDEEEEQAALTRPEELSYEVINIQATQDQQRSEELARIM 363
G M K PS P LN+ T +EE LTRP S+ ++ +Q + D + + I
Sbjct: 5198 GVMLSKSPSRSSP-LHLNVNTGFQEESIPILTRP---SFPLVKLQVSPDTEGGTCIRPIA 5253
Query: 364 GEFEITEQ--PRLSTSKGDD 381
G+ I Q +S +K +D
Sbjct: 5254 GDILIYLQKGKHVSQNKEED 5273
>gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 28.9 bits (63), Expect = 8.3
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 304 GGMEIKKPSGPEPGFRLNLFTTDEEEEQAALTRPEELSYEVINIQATQDQQRSEELARIM 363
G M K PS P LN+ T +EE LTRP S+ ++ +Q + D + + I
Sbjct: 5046 GVMLSKSPSRSSP-LHLNVNTGFQEESIPILTRP---SFPLVKLQVSPDTEGGTCIRPIA 5101
Query: 364 GEFEITEQ--PRLSTSKGDD 381
G+ I Q +S +K +D
Sbjct: 5102 GDILIYLQKGKHVSQNKEED 5121
>gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 28.9 bits (63), Expect = 8.3
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 304 GGMEIKKPSGPEPGFRLNLFTTDEEEEQAALTRPEELSYEVINIQATQDQQRSEELARIM 363
G M K PS P LN+ T +EE LTRP S+ ++ +Q + D + + I
Sbjct: 5046 GVMLSKSPSRSSP-LHLNVNTGFQEESIPILTRP---SFPLVKLQVSPDTEGGTCIRPIA 5101
Query: 364 GEFEITEQ--PRLSTSKGDD 381
G+ I Q +S +K +D
Sbjct: 5102 GDILIYLQKGKHVSQNKEED 5121
>gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 28.9 bits (63), Expect = 8.3
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 304 GGMEIKKPSGPEPGFRLNLFTTDEEEEQAALTRPEELSYEVINIQATQDQQRSEELARIM 363
G M K PS P LN+ T +EE LTRP S+ ++ +Q + D + + I
Sbjct: 5046 GVMLSKSPSRSSP-LHLNVNTGFQEESIPILTRP---SFPLVKLQVSPDTEGGTCIRPIA 5101
Query: 364 GEFEITEQ--PRLSTSKGDD 381
G+ I Q +S +K +D
Sbjct: 5102 GDILIYLQKGKHVSQNKEED 5121
>gi|160948610 E3 ubiquitin-protein ligase UBR3 [Homo sapiens]
Length = 1888
Score = 28.9 bits (63), Expect = 8.3
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
Query: 300 ARLMGGMEIKKPSGPEPGFRLNLFTTDEEEEQAALTRPEELSYEVINIQATQDQQRSEEL 359
A +GG + +P P PG L+ T +AAL+RP+ ++ +EEL
Sbjct: 6 AAAVGGQQPSQPELPAPGLALDKAAT-AAHLKAALSRPD-------------NRAGAEEL 51
Query: 360 ARIMGEFEITEQPRLSTSKGDDLLA 384
++ E+P + + G+D A
Sbjct: 52 QALLERVLSAERPLAAAAGGEDAAA 76
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,507,991
Number of Sequences: 37866
Number of extensions: 675990
Number of successful extensions: 1735
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1724
Number of HSP's gapped (non-prelim): 29
length of query: 389
length of database: 18,247,518
effective HSP length: 104
effective length of query: 285
effective length of database: 14,309,454
effective search space: 4078194390
effective search space used: 4078194390
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.