Search of human proteins with 108796649

Search of human proteins with 108796649

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|108796649 hypothetical protein LOC283677 [Homo sapiens]
         (266 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|108796649 hypothetical protein LOC283677 [Homo sapiens]            545   e-155
gi|4506401 v-raf-1 murine leukemia viral oncogene homolog 1 [Hom...    33   0.26 
gi|56549671 solute carrier family 41, member 3 isoform 2 [Homo s...    33   0.34 
gi|56549677 solute carrier family 41, member 3 isoform 4 [Homo s...    33   0.34 
gi|56549675 solute carrier family 41, member 3 isoform 3 [Homo s...    33   0.34 
gi|56549673 solute carrier family 41, member 3 isoform 1 [Homo s...    33   0.34 
gi|239757400 PREDICTED: hypothetical protein LOC147670 [Homo sap...    32   0.58 
gi|169214485 PREDICTED: hypothetical protein LOC147670 [Homo sap...    32   0.58 
gi|169213439 PREDICTED: hypothetical protein LOC147670 [Homo sap...    32   0.58 
gi|61744477 solute carrier family 3, member 2 isoform b [Homo sa...    32   0.75 
gi|61744479 solute carrier family 3, member 2 isoform d [Homo sa...    31   1.3  
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    31   1.3  
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    31   1.3  
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    31   1.3  
gi|206725526 signal-induced proliferation-associated protein 1 [...    31   1.3  
gi|206725523 signal-induced proliferation-associated protein 1 [...    31   1.3  
gi|4758434 growth hormone secretagogue receptor isoform 1b [Homo...    30   1.7  
gi|55743073 ATPase, Cu++ transporting, beta polypeptide isoform ...    30   2.2  
gi|55743071 ATPase, Cu++ transporting, beta polypeptide isoform ...    30   2.2  
gi|125625357 Sp2 transcription factor [Homo sapiens]                   30   2.2  
gi|119120938 COBW domain containing 5 [Homo sapiens]                   30   2.2  
gi|90652861 protein-tyrosine-phosphatase non-receptor 5 isoform ...    30   2.9  
gi|90652859 protein-tyrosine-phosphatase non-receptor 5 isoform ...    30   2.9  
gi|90652853 protein-tyrosine-phosphatase non-receptor 5 isoform ...    30   2.9  
gi|19923391 homeobox D3 [Homo sapiens]                                 30   2.9  
gi|5032281 dystrophin Dp427c isoform [Homo sapiens]                    29   3.7  
gi|238859557 regulatory factor X1 [Homo sapiens]                       29   3.7  
gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]                   29   3.7  
gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]                   29   3.7  
gi|5032285 dystrophin Dp427l isoform [Homo sapiens]                    29   3.7  

>gi|108796649 hypothetical protein LOC283677 [Homo sapiens]
          Length = 266

 Score =  545 bits (1403), Expect = e-155
 Identities = 266/266 (100%), Positives = 266/266 (100%)

Query: 1   MAEAGKVPLSLGLTGGEAAEWPLQRYARCIPSNTRDPPGPCLEAGTAPCPTWKVFDSNEE 60
           MAEAGKVPLSLGLTGGEAAEWPLQRYARCIPSNTRDPPGPCLEAGTAPCPTWKVFDSNEE
Sbjct: 1   MAEAGKVPLSLGLTGGEAAEWPLQRYARCIPSNTRDPPGPCLEAGTAPCPTWKVFDSNEE 60

Query: 61  SGYLVLTIVISGHFFIFQGQTLLEGFSLIGSKDWLKIVRRVDCLLFGTTIKDKSRLFRVQ 120
           SGYLVLTIVISGHFFIFQGQTLLEGFSLIGSKDWLKIVRRVDCLLFGTTIKDKSRLFRVQ
Sbjct: 61  SGYLVLTIVISGHFFIFQGQTLLEGFSLIGSKDWLKIVRRVDCLLFGTTIKDKSRLFRVQ 120

Query: 121 FSGESKEQALEHCCSCVQKLAQYITVQVPDGNIQELQLIPGPPRATESQGKDSAKSVPRQ 180
           FSGESKEQALEHCCSCVQKLAQYITVQVPDGNIQELQLIPGPPRATESQGKDSAKSVPRQ
Sbjct: 121 FSGESKEQALEHCCSCVQKLAQYITVQVPDGNIQELQLIPGPPRATESQGKDSAKSVPRQ 180

Query: 181 PGSHQHSEQQQVCVTAGTGAPDGRTSLTQLAQTLLASEELPHVYEQSAWGAEELGPFLRL 240
           PGSHQHSEQQQVCVTAGTGAPDGRTSLTQLAQTLLASEELPHVYEQSAWGAEELGPFLRL
Sbjct: 181 PGSHQHSEQQQVCVTAGTGAPDGRTSLTQLAQTLLASEELPHVYEQSAWGAEELGPFLRL 240

Query: 241 CLMDQNFPAFVEEVEKELKKLAGLRN 266
           CLMDQNFPAFVEEVEKELKKLAGLRN
Sbjct: 241 CLMDQNFPAFVEEVEKELKKLAGLRN 266


>gi|4506401 v-raf-1 murine leukemia viral oncogene homolog 1 [Homo
           sapiens]
          Length = 648

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 12/89 (13%)

Query: 133 CCSCVQKLAQYITVQVPD-----GNIQELQLIP-------GPPRATESQGKDSAKSVPRQ 180
           C +C  K  ++ + +VP       NI++L L P       G P       +   +SV R 
Sbjct: 165 CQTCGYKFHEHCSTKVPTMCVDWSNIRQLLLFPNSTIGDSGVPALPSLTMRRMRESVSRM 224

Query: 181 PGSHQHSEQQQVCVTAGTGAPDGRTSLTQ 209
           P S QH        T  T +P    SL+Q
Sbjct: 225 PVSSQHRYSTPHAFTFNTSSPSSEGSLSQ 253


>gi|56549671 solute carrier family 41, member 3 isoform 2 [Homo
           sapiens]
          Length = 487

 Score = 32.7 bits (73), Expect = 0.34
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 48  PCPTWKVFDSNEESGYLVLTIVISGHFFIFQGQTLLEGFSLIGSKDWL 95
           PC T+   + N  S  ++L +V+ GH   F    L+EG S+I S+ ++
Sbjct: 361 PCSTFCTSEINSMSARVLLLLVVPGHLIFFYIIYLVEGQSVINSQTFV 408


>gi|56549677 solute carrier family 41, member 3 isoform 4 [Homo
           sapiens]
          Length = 461

 Score = 32.7 bits (73), Expect = 0.34
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 48  PCPTWKVFDSNEESGYLVLTIVISGHFFIFQGQTLLEGFSLIGSKDWL 95
           PC T+   + N  S  ++L +V+ GH   F    L+EG S+I S+ ++
Sbjct: 335 PCSTFCTSEINSMSARVLLLLVVPGHLIFFYIIYLVEGQSVINSQTFV 382


>gi|56549675 solute carrier family 41, member 3 isoform 3 [Homo
           sapiens]
          Length = 471

 Score = 32.7 bits (73), Expect = 0.34
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 48  PCPTWKVFDSNEESGYLVLTIVISGHFFIFQGQTLLEGFSLIGSKDWL 95
           PC T+   + N  S  ++L +V+ GH   F    L+EG S+I S+ ++
Sbjct: 325 PCSTFCTSEINSMSARVLLLLVVPGHLIFFYIIYLVEGQSVINSQTFV 372


>gi|56549673 solute carrier family 41, member 3 isoform 1 [Homo
           sapiens]
          Length = 507

 Score = 32.7 bits (73), Expect = 0.34
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 48  PCPTWKVFDSNEESGYLVLTIVISGHFFIFQGQTLLEGFSLIGSKDWL 95
           PC T+   + N  S  ++L +V+ GH   F    L+EG S+I S+ ++
Sbjct: 361 PCSTFCTSEINSMSARVLLLLVVPGHLIFFYIIYLVEGQSVINSQTFV 408


>gi|239757400 PREDICTED: hypothetical protein LOC147670 [Homo
           sapiens]
          Length = 338

 Score = 32.0 bits (71), Expect = 0.58
 Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 151 GNIQELQLIPG-PPRATESQGKDSAKS-VPRQPGSHQHSEQQQVCVTAGTGAPDGRTSLT 208
           G  Q L L+PG P R  E + K+   S  P  PG+ Q    +Q   T G   P+ RT  T
Sbjct: 186 GGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPPGAMQSLRPEQ---TRGLLEPE-RTK-T 240

Query: 209 QLAQTLLASEELPHVYEQSAWGAEELG 235
            L +   A E+ PH      W A E+G
Sbjct: 241 LLPRESRAWEKPPHPACTKDWEAVEVG 267


>gi|169214485 PREDICTED: hypothetical protein LOC147670 [Homo
           sapiens]
          Length = 338

 Score = 32.0 bits (71), Expect = 0.58
 Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 151 GNIQELQLIPG-PPRATESQGKDSAKS-VPRQPGSHQHSEQQQVCVTAGTGAPDGRTSLT 208
           G  Q L L+PG P R  E + K+   S  P  PG+ Q    +Q   T G   P+ RT  T
Sbjct: 186 GGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPPGAMQSLRPEQ---TRGLLEPE-RTK-T 240

Query: 209 QLAQTLLASEELPHVYEQSAWGAEELG 235
            L +   A E+ PH      W A E+G
Sbjct: 241 LLPRESRAWEKPPHPACTKDWEAVEVG 267


>gi|169213439 PREDICTED: hypothetical protein LOC147670 [Homo
           sapiens]
          Length = 338

 Score = 32.0 bits (71), Expect = 0.58
 Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 151 GNIQELQLIPG-PPRATESQGKDSAKS-VPRQPGSHQHSEQQQVCVTAGTGAPDGRTSLT 208
           G  Q L L+PG P R  E + K+   S  P  PG+ Q    +Q   T G   P+ RT  T
Sbjct: 186 GGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPPGAMQSLRPEQ---TRGLLEPE-RTK-T 240

Query: 209 QLAQTLLASEELPHVYEQSAWGAEELG 235
            L +   A E+ PH      W A E+G
Sbjct: 241 LLPRESRAWEKPPHPACTKDWEAVEVG 267


>gi|61744477 solute carrier family 3, member 2 isoform b [Homo
           sapiens]
          Length = 631

 Score = 31.6 bits (70), Expect = 0.75
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 176 SVPRQ-PGSHQHSEQQQVCVTAGTGAPDGRTSLTQLAQTLLASEELPHVYEQSAWGAEEL 234
           S+PRQ PGSH  +  Q +  +AG  +  G   +TQ    LLAS + P +  ++A    E 
Sbjct: 14  SIPRQLPGSHSEAGVQGL--SAGDDSETGSDCVTQAGLQLLASSDPPALASKNAEVTVET 71

Query: 235 G 235
           G
Sbjct: 72  G 72


>gi|61744479 solute carrier family 3, member 2 isoform d [Homo
           sapiens]
          Length = 599

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 176 SVPRQ-PGSHQHSEQQQVCVTAGTGAPDGRTSLTQLAQTLLASEELPHVYEQSA 228
           S+PRQ PGSH  +  Q +  +AG  +  G   +TQ    LLAS + P +  ++A
Sbjct: 14  SIPRQLPGSHSEAGVQGL--SAGDDSETGSDCVTQAGLQLLASSDPPALASKNA 65


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
           [Homo sapiens]
          Length = 1650

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 8/59 (13%)

Query: 141 AQYITVQVPDGNIQELQLIPGPPRATES--------QGKDSAKSVPRQPGSHQHSEQQQ 191
           A+ +  +V +G++QEL ++PG   A ES        +G    +   +QP   Q S QQQ
Sbjct: 193 ARILDEEVFEGDVQELAIVPGVQAAYESCEQKELECEGGQRERPQNQQPHRAQRSPQQQ 251


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
           [Homo sapiens]
          Length = 1629

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 8/59 (13%)

Query: 141 AQYITVQVPDGNIQELQLIPGPPRATES--------QGKDSAKSVPRQPGSHQHSEQQQ 191
           A+ +  +V +G++QEL ++PG   A ES        +G    +   +QP   Q S QQQ
Sbjct: 193 ARILDEEVFEGDVQELAIVPGVQAAYESCEQKELECEGGQRERPQNQQPHRAQRSPQQQ 251


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
           [Homo sapiens]
          Length = 1736

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 8/59 (13%)

Query: 141 AQYITVQVPDGNIQELQLIPGPPRATES--------QGKDSAKSVPRQPGSHQHSEQQQ 191
           A+ +  +V +G++QEL ++PG   A ES        +G    +   +QP   Q S QQQ
Sbjct: 193 ARILDEEVFEGDVQELAIVPGVQAAYESCEQKELECEGGQRERPQNQQPHRAQRSPQQQ 251


>gi|206725526 signal-induced proliferation-associated protein 1
           [Homo sapiens]
          Length = 1042

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 11/84 (13%)

Query: 151 GNIQELQLIPGPPRATESQGKDSAKSVPRQPGSHQHSEQQQVCVTAGTGAPD-GRTSLTQ 209
           G I E  L PGPPR             PR+   H   +    C+  G+ +P   RT LT 
Sbjct: 275 GTISEDALPPGPPRGLS----------PRKLLEHVAPQLSPSCLRLGSASPKVPRTLLTL 324

Query: 210 LAQTLLASEELPHVYEQSAWGAEE 233
             Q L    ++  +Y ++  G+EE
Sbjct: 325 DEQVLSFQRKVGILYCRAGQGSEE 348


>gi|206725523 signal-induced proliferation-associated protein 1
           [Homo sapiens]
          Length = 1042

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 11/84 (13%)

Query: 151 GNIQELQLIPGPPRATESQGKDSAKSVPRQPGSHQHSEQQQVCVTAGTGAPD-GRTSLTQ 209
           G I E  L PGPPR             PR+   H   +    C+  G+ +P   RT LT 
Sbjct: 275 GTISEDALPPGPPRGLS----------PRKLLEHVAPQLSPSCLRLGSASPKVPRTLLTL 324

Query: 210 LAQTLLASEELPHVYEQSAWGAEE 233
             Q L    ++  +Y ++  G+EE
Sbjct: 325 DEQVLSFQRKVGILYCRAGQGSEE 348


>gi|4758434 growth hormone secretagogue receptor isoform 1b [Homo
           sapiens]
          Length = 289

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 17/92 (18%)

Query: 43  EAGTAPCPTWKVFDSNE--------ESGYLVLTIVISGHFFIFQGQTLLEGFSLIGSKDW 94
           E GT P      +D+NE         SG L + + +S  FF      L   +SLIG K W
Sbjct: 187 ENGTDP------WDTNECRPTEFAVRSGLLTVMVWVSSIFFFLPVFCLTVLYSLIGRKLW 240

Query: 95  LKIVRRVDCLLFGTTIKDKSRLFRVQFSGESK 126
            +  RR D ++ G +++D++    V+  G S+
Sbjct: 241 RR--RRGDAVV-GASLRDQNHKQTVKMLGGSQ 269


>gi|55743073 ATPase, Cu++ transporting, beta polypeptide isoform b
           [Homo sapiens]
          Length = 1258

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 119 VQFSGESKEQALEHCCSCVQKLAQYITVQ-VPDGNIQELQLIPGPPRATESQGKDSAKSV 177
           +Q S E+K   +++  SC   +A    ++ +P GN +        P   E  G D   S 
Sbjct: 288 IQVSLENKTAQVKYDPSCTSPVALQRAIEALPPGNFKV-----SLPDGAEGSGTDHRSSS 342

Query: 178 PRQPGSHQHSEQQQVCVT 195
              PGS   ++ Q  C T
Sbjct: 343 SHSPGSPPRNQVQGTCST 360


>gi|55743071 ATPase, Cu++ transporting, beta polypeptide isoform a
           [Homo sapiens]
          Length = 1465

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 119 VQFSGESKEQALEHCCSCVQKLAQYITVQ-VPDGNIQELQLIPGPPRATESQGKDSAKSV 177
           +Q S E+K   +++  SC   +A    ++ +P GN +        P   E  G D   S 
Sbjct: 288 IQVSLENKTAQVKYDPSCTSPVALQRAIEALPPGNFKV-----SLPDGAEGSGTDHRSSS 342

Query: 178 PRQPGSHQHSEQQQVCVT 195
              PGS   ++ Q  C T
Sbjct: 343 SHSPGSPPRNQVQGTCST 360


>gi|125625357 Sp2 transcription factor [Homo sapiens]
          Length = 613

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 17/53 (32%), Positives = 25/53 (47%)

Query: 145 TVQVPDGNIQELQLIPGPPRATESQGKDSAKSVPRQPGSHQHSEQQQVCVTAG 197
           T+QV      ++Q+IPG  +A  +    S K VP +P   Q S      V +G
Sbjct: 145 TIQVQPNLTNQIQIIPGTNQAIITPSPSSHKPVPIKPAPIQKSSTTTTPVQSG 197


>gi|119120938 COBW domain containing 5 [Homo sapiens]
          Length = 347

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 142 QYITVQVPDGNIQEL-QLIPGPPRATESQGKDSAKSVPRQPGSHQHSEQQQVCVTAGTGA 200
           +++T + PDG I E  + I G  +  E+Q     K +   PG+  H +Q  V +T     
Sbjct: 176 KHLTEEKPDGLINEATRSINGLGQILETQRSSLQKKLQHVPGTQPHLDQSIVTITFEVPG 235

Query: 201 PDGRTSLTQLAQTLL 215
                 L    Q LL
Sbjct: 236 NAKEEHLNMFIQNLL 250


>gi|90652861 protein-tyrosine-phosphatase non-receptor 5 isoform b
           [Homo sapiens]
          Length = 533

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 124 ESKEQALEHCCS-CVQKLAQYITVQVPDG--NIQELQLIPGPPRATESQGKDSAKSVPRQ 180
           +S+  AL+ CCS  +  L Q I ++  D    +Q+ Q    PP         + K  PR 
Sbjct: 17  DSEGGALDMCCSERLPGLPQPIVMEALDEAEGLQDSQREMPPPPPPSPPSDPAQKPPPRG 76

Query: 181 PGSHQHSEQQQVCVTAGT 198
            GSH  + +  +C+ A +
Sbjct: 77  AGSHSLTVRSSLCLFAAS 94


>gi|90652859 protein-tyrosine-phosphatase non-receptor 5 isoform a
           [Homo sapiens]
          Length = 565

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 124 ESKEQALEHCCS-CVQKLAQYITVQVPDG--NIQELQLIPGPPRATESQGKDSAKSVPRQ 180
           +S+  AL+ CCS  +  L Q I ++  D    +Q+ Q    PP         + K  PR 
Sbjct: 17  DSEGGALDMCCSERLPGLPQPIVMEALDEAEGLQDSQREMPPPPPPSPPSDPAQKPPPRG 76

Query: 181 PGSHQHSEQQQVCVTAGT 198
            GSH  + +  +C+ A +
Sbjct: 77  AGSHSLTVRSSLCLFAAS 94


>gi|90652853 protein-tyrosine-phosphatase non-receptor 5 isoform a
           [Homo sapiens]
          Length = 565

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 124 ESKEQALEHCCS-CVQKLAQYITVQVPDG--NIQELQLIPGPPRATESQGKDSAKSVPRQ 180
           +S+  AL+ CCS  +  L Q I ++  D    +Q+ Q    PP         + K  PR 
Sbjct: 17  DSEGGALDMCCSERLPGLPQPIVMEALDEAEGLQDSQREMPPPPPPSPPSDPAQKPPPRG 76

Query: 181 PGSHQHSEQQQVCVTAGT 198
            GSH  + +  +C+ A +
Sbjct: 77  AGSHSLTVRSSLCLFAAS 94


>gi|19923391 homeobox D3 [Homo sapiens]
          Length = 432

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 161 GPPRATESQGKDSAKSVPRQPGSHQHSEQQQVCVTAGTGAPD 202
           G P A+ S    S +  P    S Q+S+Q+  C TAG    D
Sbjct: 145 GGPNASSSSATISKQIFPWMKESRQNSKQKNSCATAGESCED 186


>gi|5032281 dystrophin Dp427c isoform [Homo sapiens]
          Length = 3677

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 13/74 (17%)

Query: 126 KEQALEHCCSCVQKLAQYITVQVPDGNIQELQLIPGPPRATESQGKDSAKSVPRQPGSHQ 185
           K+  L +  S  Q L Q ++++     IQE++++P PP+ T+ +              HQ
Sbjct: 217 KKSILMYITSLFQVLPQQVSIEA----IQEVEMLPRPPKVTKEEHFQL---------HHQ 263

Query: 186 HSEQQQVCVTAGTG 199
               QQ+ V+   G
Sbjct: 264 MHYSQQITVSLAQG 277


>gi|238859557 regulatory factor X1 [Homo sapiens]
          Length = 979

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 142 QYITVQVPDGNIQELQLIP-GPPRATESQGKDSAKSVPRQPGSHQHSEQQQVCVTAGTGA 200
           QYI V V +G ++  + +    P +T SQ       VP Q        QQ++ V     A
Sbjct: 99  QYIVVTVSEGAMRASETVSEASPGSTASQ-----TGVPTQVVQQVQGTQQRLLVQTSVQA 153

Query: 201 PDGRTSLTQLAQTLLASEELP 221
             G  S  QL    +  + LP
Sbjct: 154 KPGHVSPLQLTNIQVPQQALP 174


>gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]
          Length = 3562

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 13/74 (17%)

Query: 126 KEQALEHCCSCVQKLAQYITVQVPDGNIQELQLIPGPPRATESQGKDSAKSVPRQPGSHQ 185
           K+  L +  S  Q L Q ++++     IQE++++P PP+ T+ +              HQ
Sbjct: 102 KKSILMYITSLFQVLPQQVSIEA----IQEVEMLPRPPKVTKEEHFQL---------HHQ 148

Query: 186 HSEQQQVCVTAGTG 199
               QQ+ V+   G
Sbjct: 149 MHYSQQITVSLAQG 162


>gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]
          Length = 3681

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 13/74 (17%)

Query: 126 KEQALEHCCSCVQKLAQYITVQVPDGNIQELQLIPGPPRATESQGKDSAKSVPRQPGSHQ 185
           K+  L +  S  Q L Q ++++     IQE++++P PP+ T+ +              HQ
Sbjct: 221 KKSILMYITSLFQVLPQQVSIEA----IQEVEMLPRPPKVTKEEHFQL---------HHQ 267

Query: 186 HSEQQQVCVTAGTG 199
               QQ+ V+   G
Sbjct: 268 MHYSQQITVSLAQG 281


>gi|5032285 dystrophin Dp427l isoform [Homo sapiens]
          Length = 3562

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 13/74 (17%)

Query: 126 KEQALEHCCSCVQKLAQYITVQVPDGNIQELQLIPGPPRATESQGKDSAKSVPRQPGSHQ 185
           K+  L +  S  Q L Q ++++     IQE++++P PP+ T+ +              HQ
Sbjct: 102 KKSILMYITSLFQVLPQQVSIEA----IQEVEMLPRPPKVTKEEHFQL---------HHQ 148

Query: 186 HSEQQQVCVTAGTG 199
               QQ+ V+   G
Sbjct: 149 MHYSQQITVSLAQG 162


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,793,552
Number of Sequences: 37866
Number of extensions: 582399
Number of successful extensions: 2006
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1974
Number of HSP's gapped (non-prelim): 66
length of query: 266
length of database: 18,247,518
effective HSP length: 100
effective length of query: 166
effective length of database: 14,460,918
effective search space: 2400512388
effective search space used: 2400512388
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.