Guide to the Human Genome
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Name: COMMD2 Sequence: fasta or formatted (199aa) NCBI GI: 45545435
Description:

COMM domain containing 2

Referenced in:

Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         12           2
 C cysteine            0.5          1           1
 D aspartate           4.0          8           1
 E glutamate           9.0         18           2
 F phenylalanine       3.0          6           1
 G glycine             3.5          7           1
 H histidine           4.0          8           1
 I isoleucine          4.0          8           1
 K lysine              5.5         11           1
 L leucine            17.1         34           3
 M methionine          1.5          3           1
 N asparagine          5.0         10           1
 P proline             3.0          6           1
 Q glutamine           6.0         12           2
 R arginine            6.0         12           2
 S serine              7.0         14           2
 T threonine           4.5          9           1
 V valine              7.5         15           2
 W tryptophan          0.5          1           1
 Y tyrosine            2.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   COMM domain containing 2 
COMMD3                0.041   COMM domain containing 3 
COMMD9                0.039   COMM domain containing 9 isoform 1 
COMMD9                0.033   COMM domain containing 9 isoform 2 
COMMD5                0.028   COMM domain containing 5 
COMMD5                0.028   COMM domain containing 5 
COMMD5                0.028   COMM domain containing 5 
CCDC151               0.022   coiled-coil domain containing 151 
COMMD8                0.019   COMM domain containing 8 
GOLGA4                0.014   golgi autoantigen, golgin subfamily a, 4 
KEL                   0.014   Kell blood group, metallo-endopeptidase 
TRIP11                0.014   thyroid hormone receptor interactor 11 
COMMD1                0.014   MURR1 
URB2                  0.014   URB2 ribosome biogenesis 2 homolog 
FILIP1L               0.011   filamin A interacting protein 1-like isoform 3 [Hom...
FILIP1L               0.011   filamin A interacting protein 1-like isoform 1 [Hom...
CENPF                 0.008   centromere protein F 
HISPPD2A              0.008   histidine acid phosphatase domain containing 2A iso...
HISPPD2A              0.008   histidine acid phosphatase domain containing 2A iso...
HISPPD2A              0.008   histidine acid phosphatase domain containing 2A isof...
HISPPD2A              0.008   histidine acid phosphatase domain containing 2A isof...
DAAM2                 0.008   dishevelled associated activator of morphogenesis 2 ...
CNGA3                 0.008   cyclic nucleotide gated channel alpha 3 isoform 2 [...
CNGA3                 0.008   cyclic nucleotide gated channel alpha 3 isoform 1 [Ho...
FMNL2                 0.008   formin-like 2 
CCDC18                0.008   sarcoma antigen NY-SAR-41 
LOC441016             0.006   PREDICTED: similar to COMM domain containing 5 [Hom...
LOC441016             0.006   PREDICTED: similar to COMM domain containing 5 [Hom...
LOC441016             0.006   PREDICTED: similar to COMM domain containing 5 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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