Guide to the Human Genome
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Name: COMMD1 Sequence: fasta or formatted (190aa) NCBI GI: 22749079
Description:

MURR1

Referenced in:

Iron, Copper, and Arsenic Metabolism
Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         13           2
 C cysteine            0.5          1           1
 D aspartate           3.2          6           1
 E glutamate           9.5         18           2
 F phenylalanine       4.2          8           1
 G glycine             7.4         14           2
 H histidine           2.1          4           1
 I isoleucine          6.3         12           2
 K lysine              6.8         13           2
 L leucine            11.6         22           2
 M methionine          2.1          4           1
 N asparagine          3.2          6           1
 P proline             4.2          8           2
 Q glutamine           6.3         12           1
 R arginine            4.2          8           1
 S serine             10.0         19           1
 T threonine           4.7          9           1
 V valine              3.7          7           1
 W tryptophan          1.6          3           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   MURR1 
CKAP4                 0.054   cytoskeleton-associated protein 4 
COMMD4                0.031   COMM domain containing 4 
ANKRD26               0.023   ankyrin repeat domain 26 
COMMD2                0.014   COMM domain containing 2 
COMMD9                0.009   COMM domain containing 9 isoform 2 
COMMD9                0.009   COMM domain containing 9 isoform 1 
GNAT3                 0.009   guanine nucleotide binding protein, alpha transduci...
LRRTM1                0.006   leucine rich repeat transmembrane neuronal 1 
IQCH                  0.006   IQ motif containing H isoform 1 
IQCH                  0.006   IQ motif containing H isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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