Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 45505143
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|45505143 neuromedin B isoform 1 [Homo sapiens]
(121 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|45505143 neuromedin B isoform 1 [Homo sapiens] 239 4e-64
gi|45505145 neuromedin B isoform 2 [Homo sapiens] 219 4e-58
gi|31542860 gastrin-releasing peptide isoform 1 preproprotein [H... 38 0.002
gi|60498999 gastrin-releasing peptide isoform 3 preproprotein [H... 38 0.002
gi|60498997 gastrin-releasing peptide isoform 2 preproprotein [H... 38 0.002
gi|115511057 hypothetical protein LOC256643 [Homo sapiens] 28 1.6
gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo ... 28 2.2
gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo ... 28 2.2
gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo ... 28 2.2
gi|154426272 hypothetical protein LOC54540 [Homo sapiens] 28 2.2
gi|222352170 neuraminidase 2 [Homo sapiens] 27 3.7
gi|116805342 human immunodeficiency virus type I enhancer bindin... 27 3.7
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 27 4.8
gi|239757256 PREDICTED: hypothetical protein XP_002345223 [Homo ... 26 6.3
gi|239751761 PREDICTED: hypothetical protein [Homo sapiens] 26 6.3
gi|239746261 PREDICTED: hypothetical protein XP_002343718 [Homo ... 26 6.3
gi|149773449 zinc finger protein 862 [Homo sapiens] 26 6.3
gi|87252717 hypothetical protein LOC284618 [Homo sapiens] 26 6.3
gi|115298678 complement component 3 precursor [Homo sapiens] 26 8.2
gi|117676384 splicing factor, arginine/serine-rich 2, interactin... 26 8.2
gi|169218213 PREDICTED: similar to complement component C3, part... 26 8.2
gi|4502349 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3 ... 26 8.2
>gi|45505143 neuromedin B isoform 1 [Homo sapiens]
Length = 121
Score = 239 bits (610), Expect = 4e-64
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS 60
MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS
Sbjct: 1 MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS 60
Query: 61 LEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQYRRLLVQILQ 120
LEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQYRRLLVQILQ
Sbjct: 61 LEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQYRRLLVQILQ 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|45505145 neuromedin B isoform 2 [Homo sapiens]
Length = 154
Score = 219 bits (558), Expect = 4e-58
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS 60
MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS
Sbjct: 1 MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS 60
Query: 61 LEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQ 110
LEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQ
Sbjct: 61 LEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQ 110
>gi|31542860 gastrin-releasing peptide isoform 1 preproprotein
[Homo sapiens]
Length = 148
Score = 38.1 bits (87), Expect = 0.002
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 14 LLLFALLAAGVAPLSWDLPEPRSRASKI-RVHSRGNLWATGHFMGKKSL-EPSSPSPLGT 71
L+L AL+ +AP +P P + + +++ RGN WA GH MGKKS E SS S G+
Sbjct: 8 LVLLALVLC-LAPRGRAVPLPAGGGTVLTKMYPRGNHWAVGHLMGKKSTGESSSVSERGS 66
Query: 72 APHTSLRD--QRLQLSHDLLGILLLKK 96
LR+ + + + +LLG++ K+
Sbjct: 67 LKQ-QLREYIRWEEAARNLLGLIEAKE 92
>gi|60498999 gastrin-releasing peptide isoform 3 preproprotein
[Homo sapiens]
Length = 138
Score = 38.1 bits (87), Expect = 0.002
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 14 LLLFALLAAGVAPLSWDLPEPRSRASKI-RVHSRGNLWATGHFMGKKSL-EPSSPSPLGT 71
L+L AL+ +AP +P P + + +++ RGN WA GH MGKKS E SS S G+
Sbjct: 8 LVLLALVLC-LAPRGRAVPLPAGGGTVLTKMYPRGNHWAVGHLMGKKSTGESSSVSERGS 66
Query: 72 APHTSLRD--QRLQLSHDLLGILLLKK 96
LR+ + + + +LLG++ K+
Sbjct: 67 LKQ-QLREYIRWEEAARNLLGLIEAKE 92
>gi|60498997 gastrin-releasing peptide isoform 2 preproprotein
[Homo sapiens]
Length = 141
Score = 38.1 bits (87), Expect = 0.002
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 14 LLLFALLAAGVAPLSWDLPEPRSRASKI-RVHSRGNLWATGHFMGKKSL-EPSSPSPLGT 71
L+L AL+ +AP +P P + + +++ RGN WA GH MGKKS E SS S G+
Sbjct: 8 LVLLALVLC-LAPRGRAVPLPAGGGTVLTKMYPRGNHWAVGHLMGKKSTGESSSVSERGS 66
Query: 72 APHTSLRD--QRLQLSHDLLGILLLKK 96
LR+ + + + +LLG++ K+
Sbjct: 67 LKQ-QLREYIRWEEAARNLLGLIEAKE 92
>gi|115511057 hypothetical protein LOC256643 [Homo sapiens]
Length = 682
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 26 PLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKSLEPSSPSP 68
P++W + + SK R+ SRGN++ +S E SPSP
Sbjct: 46 PVAWRMDSEKHGQSKPRIPSRGNIY-------YQSYEHRSPSP 81
>gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo
sapiens]
Length = 274
Score = 27.7 bits (60), Expect = 2.2
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 58 KKSLEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQ 108
++ LEP P G A D RL S + LL+K+L S SRP PQ
Sbjct: 124 RQELEPQEGGPPGAAEEA---DPRLADSTGTGRLCLLQKSLLGSPSRPLPQ 171
>gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo
sapiens]
Length = 274
Score = 27.7 bits (60), Expect = 2.2
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 58 KKSLEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQ 108
++ LEP P G A D RL S + LL+K+L S SRP PQ
Sbjct: 124 RQELEPQEGGPPGAAEEA---DPRLADSTGTGRLCLLQKSLLGSPSRPLPQ 171
>gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo
sapiens]
Length = 274
Score = 27.7 bits (60), Expect = 2.2
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 58 KKSLEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQ 108
++ LEP P G A D RL S + LL+K+L S SRP PQ
Sbjct: 124 RQELEPQEGGPPGAAEEA---DPRLADSTGTGRLCLLQKSLLGSPSRPLPQ 171
>gi|154426272 hypothetical protein LOC54540 [Homo sapiens]
Length = 789
Score = 27.7 bits (60), Expect = 2.2
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 52 TGHFMGKKSLEPSSPSPLGTAPHTSL 77
TGH SL PS PS G+ PH L
Sbjct: 139 TGHHPQPASLIPSHPSSFGSPPHPHL 164
>gi|222352170 neuraminidase 2 [Homo sapiens]
Length = 380
Score = 26.9 bits (58), Expect = 3.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 44 HSRGNLWATGHFMGKKSLE 62
H G WA GHF+ + +LE
Sbjct: 200 HDHGRTWARGHFVAQDTLE 218
>gi|116805342 human immunodeficiency virus type I enhancer binding
protein 1 [Homo sapiens]
Length = 2718
Score = 26.9 bits (58), Expect = 3.7
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
Query: 26 PLSWDLPEPRSRASKI------RVHSRGNLWATGHFMGKKSLEPSSPSPLGTAPHTSLRD 79
P S+D PEP RAS + R G+L G S E S PS G+ PH
Sbjct: 1145 PNSFDKPEPFERASPVSFQELNRTGKSGSLKVIG-----ISQEESHPSRDGSHPH----- 1194
Query: 80 QRLQLSHDLLGIL 92
+L LS L G L
Sbjct: 1195 -QLALSDALRGEL 1206
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform
2 [Homo sapiens]
Length = 8749
Score = 26.6 bits (57), Expect = 4.8
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 31 LPEPRSRASKIRVHSRGNLWATGHFM-GKKSLEPSSPSPLGTAPHTSLRDQRLQLSHDLL 89
LP + R K R+H+ N+ F+ G+KS+ SP L T + D R + L+
Sbjct: 75 LPCEQGRRMK-RIHAVANIGTALKFLEGRKSMHRGSPIKLVNINSTDIADGRPSIVLGLM 133
Query: 90 GILLLKKALGVSLSRPAPQIQ 110
++L + L+ PQ+Q
Sbjct: 134 WTIILYFQI-EELTSNLPQLQ 153
>gi|239757256 PREDICTED: hypothetical protein XP_002345223 [Homo
sapiens]
Length = 113
Score = 26.2 bits (56), Expect = 6.3
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 22 AGVAPLSWDLPEPRSRASKIRVHSRGNLWA 51
A APL+ P PR R S++R+ +R WA
Sbjct: 86 ASSAPLAPTKPHPRPRVSRLRLRTRA--WA 113
>gi|239751761 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 26.2 bits (56), Expect = 6.3
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 22 AGVAPLSWDLPEPRSRASKIRVHSRGNLWA 51
A APL+ P PR R S++R+ +R WA
Sbjct: 86 ASSAPLAPTKPHPRPRVSRLRLRTRA--WA 113
>gi|239746261 PREDICTED: hypothetical protein XP_002343718 [Homo
sapiens]
Length = 113
Score = 26.2 bits (56), Expect = 6.3
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 22 AGVAPLSWDLPEPRSRASKIRVHSRGNLWA 51
A APL+ P PR R S++R+ +R WA
Sbjct: 86 ASSAPLAPTKPHPRPRVSRLRLRTRA--WA 113
>gi|149773449 zinc finger protein 862 [Homo sapiens]
Length = 1169
Score = 26.2 bits (56), Expect = 6.3
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 79 DQRLQLSHDLLGILLLKKALGVSLSR--PAPQIQY 111
D+R +LS+++L +L++ GV+++ P P IQ+
Sbjct: 1052 DERTKLSNEVLNMLMMTAVNGVAVTEYDPQPAIQH 1086
>gi|87252717 hypothetical protein LOC284618 [Homo sapiens]
Length = 236
Score = 26.2 bits (56), Expect = 6.3
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 13/68 (19%)
Query: 51 ATGHFMGKKSLEPSSPSPLGTA-----PHTSLRDQRLQLSHDLLGILLLKKALGVSLSRP 105
+T H + + +PSPLGTA PH+S SH L + A LS P
Sbjct: 97 STPHLLAASAGLQPAPSPLGTAVCPFSPHSS-----PSFSHHRTLSLFISPA---PLSCP 148
Query: 106 APQIQYRR 113
AP+ Q R
Sbjct: 149 APRAQVHR 156
>gi|115298678 complement component 3 precursor [Homo sapiens]
Length = 1663
Score = 25.8 bits (55), Expect = 8.2
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 23 GVAPLSWDLPE 33
GV PLSWD+PE
Sbjct: 187 GVLPLSWDIPE 197
>gi|117676384 splicing factor, arginine/serine-rich 2, interacting
protein [Homo sapiens]
Length = 1463
Score = 25.8 bits (55), Expect = 8.2
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 33 EPRSRASKIRVHSRGNLWATGHFMGKKSLEPSSPSP 68
+PR+R S R HS W+ ++ P SPSP
Sbjct: 786 KPRTRRS--RFHSPSTTWSPNKDTPQEKKRPQSPSP 819
>gi|169218213 PREDICTED: similar to complement component C3, partial
[Homo sapiens]
Length = 1295
Score = 25.8 bits (55), Expect = 8.2
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 23 GVAPLSWDLPE 33
GV PLSWD+PE
Sbjct: 187 GVLPLSWDIPE 197
>gi|4502349 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3
[Homo sapiens]
Length = 393
Score = 25.8 bits (55), Expect = 8.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 63 PSSPSPLGTAPHTSLR 78
P+ P PL TA HT+LR
Sbjct: 375 PARPGPLSTANHTALR 390
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,003,095
Number of Sequences: 37866
Number of extensions: 231793
Number of successful extensions: 612
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 601
Number of HSP's gapped (non-prelim): 23
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.