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Search of human proteins with 45504351
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|45504351 hypothetical protein LOC389558 [Homo sapiens]
(173 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|45504351 hypothetical protein LOC389558 [Homo sapiens] 345 1e-95
gi|51470873 PREDICTED: hypothetical protein [Homo sapiens] 44 5e-05
gi|169202788 PREDICTED: hypothetical protein [Homo sapiens] 43 2e-04
gi|89034671 PREDICTED: hypothetical protein [Homo sapiens] 43 2e-04
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 31 0.61
gi|194353966 dynein, axonemal, heavy polypeptide 6 [Homo sapiens] 30 0.80
gi|5453950 protein phosphatase 2, regulatory subunit B (B56), al... 30 1.0
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 29 1.8
gi|62241003 cardiomyopathy associated 5 [Homo sapiens] 29 2.3
gi|21327708 nucleosome assembly protein 1-like 1 [Homo sapiens] 28 4.0
gi|4758756 nucleosome assembly protein 1-like 1 [Homo sapiens] 28 4.0
gi|5453952 beta isoform of regulatory subunit B56, protein phosp... 27 6.7
gi|31083243 gamma isoform of regulatory subunit B56, protein pho... 27 8.8
gi|240849359 gamma isoform of regulatory subunit B56, protein ph... 27 8.8
gi|240849353 gamma isoform of regulatory subunit B56, protein ph... 27 8.8
gi|31083236 gamma isoform of regulatory subunit B56, protein pho... 27 8.8
gi|31083259 gamma isoform of regulatory subunit B56, protein pho... 27 8.8
gi|154426288 SPATS2-like protein isoform a [Homo sapiens] 27 8.8
gi|154426253 SPATS2-like protein isoform a [Homo sapiens] 27 8.8
gi|154426310 SPATS2-like protein isoform a [Homo sapiens] 27 8.8
gi|31083288 delta isoform of regulatory subunit B56, protein pho... 27 8.8
gi|31083280 delta isoform of regulatory subunit B56, protein pho... 27 8.8
gi|5453954 delta isoform of regulatory subunit B56, protein phos... 27 8.8
gi|100814339 coiled-coil domain containing 146 [Homo sapiens] 27 8.8
>gi|45504351 hypothetical protein LOC389558 [Homo sapiens]
Length = 173
Score = 345 bits (884), Expect = 1e-95
Identities = 173/173 (100%), Positives = 173/173 (100%)
Query: 1 MHWKMLLLLLLYYNAEASMCHRWSRAVLFPAAHRPKRSSSLPLNPVLQTSLEEVELLYEF 60
MHWKMLLLLLLYYNAEASMCHRWSRAVLFPAAHRPKRSSSLPLNPVLQTSLEEVELLYEF
Sbjct: 1 MHWKMLLLLLLYYNAEASMCHRWSRAVLFPAAHRPKRSSSLPLNPVLQTSLEEVELLYEF 60
Query: 61 LLAELEISPDLQISIKDEELASLRKASDFRTVCNNVIPKSIPDIRRLSASLSSHPGILKK 120
LLAELEISPDLQISIKDEELASLRKASDFRTVCNNVIPKSIPDIRRLSASLSSHPGILKK
Sbjct: 61 LLAELEISPDLQISIKDEELASLRKASDFRTVCNNVIPKSIPDIRRLSASLSSHPGILKK 120
Query: 121 EDFERTVLTLAYTAYRTALSHGHQKDIWAQSLVSLFQALRHDLMRSSQPGVPP 173
EDFERTVLTLAYTAYRTALSHGHQKDIWAQSLVSLFQALRHDLMRSSQPGVPP
Sbjct: 121 EDFERTVLTLAYTAYRTALSHGHQKDIWAQSLVSLFQALRHDLMRSSQPGVPP 173
>gi|51470873 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 44.3 bits (103), Expect = 5e-05
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 52 EEVELLYEFLLAELEISPDLQISIKDEELASLRKASDFRTVCNNVIPKSIPD----IRRL 107
E E+++E L A LE+ Q+ I+DEELAS R + + +P + +++L
Sbjct: 86 EAPEVMFELLWAGLELDVMGQLHIQDEELASTHPGRRLRLLLQHHVPSDLEGTEQWLQQL 145
Query: 108 SASLSSHPGILKKEDFERTVLTLAYTAYRT-ALSHGHQKDIWAQSLVSLFQALRHDLMRS 166
P L DFE +LT YR A S ++ WAQ L Q DL +
Sbjct: 146 QDLRKGPP--LSTWDFEHLLLTGLSCVYRLHAASEAEERGRWAQVFALLAQETLWDLCKG 203
Query: 167 SQP 169
P
Sbjct: 204 FCP 206
>gi|169202788 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 42.7 bits (99), Expect = 2e-04
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 7/123 (5%)
Query: 52 EEVELLYEFLLAELEISPDLQISIKDEELASLRKASDFRTVCNNVIPKSIPD----IRRL 107
E E+++E L A LE+ Q+ I+DEELAS R + + +P + +++L
Sbjct: 86 EAPEVMFELLWAGLELDVMGQLHIQDEELASTHPGRRLRLLLQHHVPSDLEGTEQWLQQL 145
Query: 108 SASLSSHPGILKKEDFERTVLTLAYTAYRT-ALSHGHQKDIWAQSLVSLFQALRHDLMRS 166
P L DFE +LT YR A S ++ W Q L Q DL +
Sbjct: 146 QDLRKGPP--LSTWDFEHLLLTGLSCVYRLHAASEAEERGRWTQVFALLAQETLWDLCKG 203
Query: 167 SQP 169
P
Sbjct: 204 FCP 206
>gi|89034671 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 42.7 bits (99), Expect = 2e-04
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 7/123 (5%)
Query: 52 EEVELLYEFLLAELEISPDLQISIKDEELASLRKASDFRTVCNNVIPKSIPD----IRRL 107
E E+++E L A LE+ Q+ I+DEELAS R + + +P + +++L
Sbjct: 86 EAPEVMFELLWAGLELDVMGQLHIQDEELASTHPGRRLRLLLQHHVPSDLEGTEQWLQQL 145
Query: 108 SASLSSHPGILKKEDFERTVLTLAYTAYRT-ALSHGHQKDIWAQSLVSLFQALRHDLMRS 166
P L DFE +LT YR A S ++ W Q L Q DL +
Sbjct: 146 QDLRKGPP--LSTWDFEHLLLTGLSCVYRLHAASEAEERGRWTQVFALLAQETLWDLCKG 203
Query: 167 SQP 169
P
Sbjct: 204 FCP 206
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 30.8 bits (68), Expect = 0.61
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 98 PKSIPDIRRL--SASLSSHPGILKKEDFERTVLTLAYTAYRTALSHGHQKDIWAQSLVSL 155
P++IP I++L + L+ P + + V L YTA R + G ++ W + +
Sbjct: 845 PRTIPLIQQLLNATELTQDPAA-----YSQLVAVLVYTAERAKFATGVERQDWMELFIDT 899
Query: 156 FQALRHDLM 164
F+ + D++
Sbjct: 900 FKLVHRDIV 908
>gi|194353966 dynein, axonemal, heavy polypeptide 6 [Homo sapiens]
Length = 4158
Score = 30.4 bits (67), Expect = 0.80
Identities = 17/74 (22%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 43 LNPVLQTSLEEVELLYEFLLAELEISPDLQISIKDEELASLRKASDFRTVCNNV---IPK 99
L PVL E+VE L E L + E + ++ +++++E + KA + + + ++ + +
Sbjct: 2716 LEPVLLAKSEDVEALMEKLAVDQESADQVRNTVQEDEATAKVKAEETQAIADDAQRDLDE 2775
Query: 100 SIPDIRRLSASLSS 113
++P + + +L S
Sbjct: 2776 ALPALDAANKALDS 2789
>gi|5453950 protein phosphatase 2, regulatory subunit B (B56), alpha
isoform [Homo sapiens]
Length = 486
Score = 30.0 bits (66), Expect = 1.0
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 45 PVLQTSLEEVELLYEFLLAELEISPDLQISI 75
P L+ S ++L+YEF L LE SPD Q SI
Sbjct: 150 PTLEASWPHIQLVYEFFLRFLE-SPDFQPSI 179
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin
(with transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 29.3 bits (64), Expect = 1.8
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 25 RAVLFPAAHRPKRSSSLPLNPVLQTSLEEVELLYEFLLAELEI---SPDLQISIKDEELA 81
RA L P H+ S + N Q ++E E L+ EL+ D+Q+ KDE L
Sbjct: 27 RAPLDPELHQ---ESDMEFNNTTQEDVQERLAYAEQLVVELKDIIRQKDVQLQQKDEALQ 83
Query: 82 SLRKASD 88
RKA+D
Sbjct: 84 EERKAAD 90
>gi|62241003 cardiomyopathy associated 5 [Homo sapiens]
Length = 4069
Score = 28.9 bits (63), Expect = 2.3
Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 10/153 (6%)
Query: 30 PAAHRPKRSSSLPLNPVLQTSLEEVELLYEFLLAELEISPDLQISIKDEELASLRKASDF 89
P+ + +++ P P TS+ E +L + + + P+ + I + + K
Sbjct: 1082 PSTDKSEKAEIKPEIPTTSTSVSEYLILAQKQKTQAYLEPESEDLIPSHLTSEVEKGERE 1141
Query: 90 RTVCNNVIPKSIPD----IRRLSASLSSHPGI------LKKEDFERTVLTLAYTAYRTAL 139
+ IP ++P ++ + S H + +KKE LTL + AL
Sbjct: 1142 ASSSVAAIPAALPAQSSIVKEETKPASPHSVLPDSVPAIKKEQEPTAALTLKAADEQMAL 1201
Query: 140 SHGHQKDIWAQSLVSLFQALRHDLMRSSQPGVP 172
S +++I S + + M P VP
Sbjct: 1202 SKVRKEEIVPDSQEATAHVSQDQKMEPQPPNVP 1234
>gi|21327708 nucleosome assembly protein 1-like 1 [Homo sapiens]
Length = 391
Score = 28.1 bits (61), Expect = 4.0
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 26 AVLFPAAHRPKRSSSLPLNPVLQTSLEEVELLYEFLLAELEISPDLQISIKDEELASLRK 85
A + H +R ++ P+ E + +YE E E PD + I EEL K
Sbjct: 93 AKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEI-SEELKEKAK 151
Query: 86 ASDFRTVCNNVIPKSIPD 103
D + PK IP+
Sbjct: 152 IEDEKKDEEKEDPKGIPE 169
>gi|4758756 nucleosome assembly protein 1-like 1 [Homo sapiens]
Length = 391
Score = 28.1 bits (61), Expect = 4.0
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 26 AVLFPAAHRPKRSSSLPLNPVLQTSLEEVELLYEFLLAELEISPDLQISIKDEELASLRK 85
A + H +R ++ P+ E + +YE E E PD + I EEL K
Sbjct: 93 AKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEI-SEELKEKAK 151
Query: 86 ASDFRTVCNNVIPKSIPD 103
D + PK IP+
Sbjct: 152 IEDEKKDEEKEDPKGIPE 169
>gi|5453952 beta isoform of regulatory subunit B56, protein
phosphatase 2A [Homo sapiens]
Length = 497
Score = 27.3 bits (59), Expect = 6.7
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 45 PVLQTSLEEVELLYEFLLAELEISPDLQISI 75
P L+ S ++L+YEF L LE SPD Q S+
Sbjct: 156 PNLEPSWPHLQLVYEFFLRFLE-SPDFQPSV 185
>gi|31083243 gamma isoform of regulatory subunit B56, protein
phosphatase 2A isoform c [Homo sapiens]
Length = 449
Score = 26.9 bits (58), Expect = 8.8
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 45 PVLQTSLEEVELLYEFLLAELEISPDLQISI 75
P L+ + ++L+YEF L LE SPD Q +I
Sbjct: 125 PTLEAAWPHLQLVYEFFLRFLE-SPDFQPNI 154
>gi|240849359 gamma isoform of regulatory subunit B56, protein
phosphatase 2A isoform f [Homo sapiens]
Length = 540
Score = 26.9 bits (58), Expect = 8.8
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 45 PVLQTSLEEVELLYEFLLAELEISPDLQISI 75
P L+ + ++L+YEF L LE SPD Q +I
Sbjct: 180 PTLEAAWPHLQLVYEFFLRFLE-SPDFQPNI 209
>gi|240849353 gamma isoform of regulatory subunit B56, protein
phosphatase 2A isoform e [Homo sapiens]
Length = 555
Score = 26.9 bits (58), Expect = 8.8
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 45 PVLQTSLEEVELLYEFLLAELEISPDLQISI 75
P L+ + ++L+YEF L LE SPD Q +I
Sbjct: 156 PTLEAAWPHLQLVYEFFLRFLE-SPDFQPNI 185
>gi|31083236 gamma isoform of regulatory subunit B56, protein
phosphatase 2A isoform b [Homo sapiens]
Length = 485
Score = 26.9 bits (58), Expect = 8.8
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 45 PVLQTSLEEVELLYEFLLAELEISPDLQISI 75
P L+ + ++L+YEF L LE SPD Q +I
Sbjct: 125 PTLEAAWPHLQLVYEFFLRFLE-SPDFQPNI 154
>gi|31083259 gamma isoform of regulatory subunit B56, protein
phosphatase 2A isoform a [Homo sapiens]
Length = 524
Score = 26.9 bits (58), Expect = 8.8
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 45 PVLQTSLEEVELLYEFLLAELEISPDLQISI 75
P L+ + ++L+YEF L LE SPD Q +I
Sbjct: 125 PTLEAAWPHLQLVYEFFLRFLE-SPDFQPNI 154
>gi|154426288 SPATS2-like protein isoform a [Homo sapiens]
Length = 558
Score = 26.9 bits (58), Expect = 8.8
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 68 SPDLQISIKDEELASLRKASDFRTVCNNVIPKSIPDIRRLSASLSSHPGILKKE 121
+P + IK +ELA R + I KS+ D++R + SL+ + ++K+E
Sbjct: 201 TPAAHLEIKPDELAKKRGPN---------IEKSVKDLQRCTVSLTRYRVMIKEE 245
>gi|154426253 SPATS2-like protein isoform a [Homo sapiens]
Length = 558
Score = 26.9 bits (58), Expect = 8.8
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 68 SPDLQISIKDEELASLRKASDFRTVCNNVIPKSIPDIRRLSASLSSHPGILKKE 121
+P + IK +ELA R + I KS+ D++R + SL+ + ++K+E
Sbjct: 201 TPAAHLEIKPDELAKKRGPN---------IEKSVKDLQRCTVSLTRYRVMIKEE 245
>gi|154426310 SPATS2-like protein isoform a [Homo sapiens]
Length = 558
Score = 26.9 bits (58), Expect = 8.8
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 68 SPDLQISIKDEELASLRKASDFRTVCNNVIPKSIPDIRRLSASLSSHPGILKKE 121
+P + IK +ELA R + I KS+ D++R + SL+ + ++K+E
Sbjct: 201 TPAAHLEIKPDELAKKRGPN---------IEKSVKDLQRCTVSLTRYRVMIKEE 245
>gi|31083288 delta isoform of regulatory subunit B56, protein
phosphatase 2A isoform 3 [Homo sapiens]
Length = 496
Score = 26.9 bits (58), Expect = 8.8
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 45 PVLQTSLEEVELLYEFLLAELEISPDLQISI 75
P L+ + ++L+YEF L LE SPD Q +I
Sbjct: 95 PTLEAAWPHLQLVYEFFLRFLE-SPDFQPNI 124
>gi|31083280 delta isoform of regulatory subunit B56, protein
phosphatase 2A isoform 2 [Homo sapiens]
Length = 570
Score = 26.9 bits (58), Expect = 8.8
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 45 PVLQTSLEEVELLYEFLLAELEISPDLQISI 75
P L+ + ++L+YEF L LE SPD Q +I
Sbjct: 169 PTLEAAWPHLQLVYEFFLRFLE-SPDFQPNI 198
>gi|5453954 delta isoform of regulatory subunit B56, protein
phosphatase 2A isoform 1 [Homo sapiens]
Length = 602
Score = 26.9 bits (58), Expect = 8.8
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 45 PVLQTSLEEVELLYEFLLAELEISPDLQISI 75
P L+ + ++L+YEF L LE SPD Q +I
Sbjct: 201 PTLEAAWPHLQLVYEFFLRFLE-SPDFQPNI 230
>gi|100814339 coiled-coil domain containing 146 [Homo sapiens]
Length = 955
Score = 26.9 bits (58), Expect = 8.8
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 61 LLAELEISPDLQISIKDEELASLRKASDFRTVCNNVIPKSIP 102
L+AEL + L I ++ E +R+ DF CN+ I K +P
Sbjct: 823 LVAELSMKQALTIELQKE----VREKEDFIFTCNSRIEKGLP 860
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,309,432
Number of Sequences: 37866
Number of extensions: 234600
Number of successful extensions: 750
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 26
length of query: 173
length of database: 18,247,518
effective HSP length: 95
effective length of query: 78
effective length of database: 14,650,248
effective search space: 1142719344
effective search space used: 1142719344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.