Guide to the Human Genome
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Name: FAM180B Sequence: fasta or formatted (224aa) NCBI GI: 51470873
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {224aa} PREDICTED: hypothetical protein
alt prot {224aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         16           2
 C cysteine            2.7          6           1
 D aspartate           4.0          9           1
 E glutamate           8.5         19           2
 F phenylalanine       2.7          6           1
 G glycine             7.1         16           3
 H histidine           3.1          7           2
 I isoleucine          1.8          4           1
 K lysine              1.3          3           1
 L leucine            15.2         34           3
 M methionine          2.7          6           1
 N asparagine          0.0          0           0
 P proline             6.2         14           2
 Q glutamine           8.5         19           2
 R arginine            5.8         13           2
 S serine              6.7         15           2
 T threonine           6.7         15           3
 V valine              5.4         12           2
 W tryptophan          4.0          9           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
FAM180B               0.995   PREDICTED: hypothetical protein 
FAM180B               0.995   PREDICTED: hypothetical protein 
FAM180A               0.043   hypothetical protein LOC389558 
ECSCR                 0.011   endothelial cell-specific chemotaxis regulator [Hom...
LOC100292419          0.009   PREDICTED: hypothetical protein 
LOC100290297          0.009   PREDICTED: hypothetical protein XP_002347742 
LOC100288674          0.009   PREDICTED: hypothetical protein XP_002343540 
ATP2B1                0.007   plasma membrane calcium ATPase 1 isoform 1a 
ATP2B1                0.007   plasma membrane calcium ATPase 1 isoform 1b 
SYNE2                 0.007   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.007   spectrin repeat containing, nuclear envelope 2 isof...
KIAA1671              0.007   hypothetical protein LOC85379 
LOC100289134          0.007   PREDICTED: hypothetical protein XP_002343933 
ILDR2                 0.007   immunoglobulin-like domain containing receptor 2 [Ho...
TBC1D2                0.007   TBC1 domain family, member 2 
POLG                  0.007   DNA-directed DNA polymerase gamma 
POLG                  0.007   DNA-directed DNA polymerase gamma 
SEMA4D                0.007   semaphorin 4D isoform 2 
SEMA4D                0.007   semaphorin 4D isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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