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Search of human proteins with 45387949
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|45387949 ring finger and SPRY domain containing 1 [Homo
sapiens]
(576 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|45387949 ring finger and SPRY domain containing 1 [Homo sapiens] 1179 0.0
gi|37588869 ring finger protein 123 [Homo sapiens] 91 2e-18
gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens] 69 1e-11
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ... 69 2e-11
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ... 69 2e-11
gi|126032338 ryanodine receptor 3 [Homo sapiens] 63 8e-10
gi|38788243 myosin regulatory light chain interacting protein [H... 54 3e-07
gi|33946285 baculoviral IAP repeat-containing protein 3 [Homo sa... 52 1e-06
gi|4502139 baculoviral IAP repeat-containing protein 3 [Homo sap... 52 1e-06
gi|4826686 DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 [Homo sapiens] 50 6e-06
gi|4502141 baculoviral IAP repeat-containing protein 2 [Homo sap... 49 1e-05
gi|62865649 rififylin [Homo sapiens] 47 5e-05
gi|17432433 rififylin [Homo sapiens] 47 5e-05
gi|11545910 livin inhibitor of apoptosis isoform beta [Homo sapi... 47 5e-05
gi|21536421 livin inhibitor of apoptosis isoform alpha [Homo sap... 47 5e-05
gi|53729363 leucine rich repeat and sterile alpha motif containi... 47 6e-05
gi|53729361 leucine rich repeat and sterile alpha motif containi... 47 6e-05
gi|53729359 leucine rich repeat and sterile alpha motif containi... 47 6e-05
gi|37595539 ring finger protein 34 isoform 1 [Homo sapiens] 45 2e-04
gi|37595537 ring finger protein 34 isoform 2 [Homo sapiens] 45 2e-04
gi|217416388 neuralized homolog 1B [Homo sapiens] 43 7e-04
gi|223278368 neuralized-like [Homo sapiens] 42 0.001
gi|45594312 TNF receptor-associated factor 7 [Homo sapiens] 42 0.002
gi|30348954 mindbomb homolog 1 [Homo sapiens] 42 0.002
gi|47716512 mex-3 homolog B [Homo sapiens] 40 0.004
gi|214010238 mahogunin, ring finger 1 isoform 4 [Homo sapiens] 40 0.006
gi|214010236 mahogunin, ring finger 1 isoform 3 [Homo sapiens] 40 0.006
gi|214010234 mahogunin, ring finger 1 isoform 2 [Homo sapiens] 40 0.006
gi|44917608 mahogunin, ring finger 1 isoform 1 [Homo sapiens] 40 0.006
gi|157412282 ash2-like isoform b [Homo sapiens] 40 0.008
>gi|45387949 ring finger and SPRY domain containing 1 [Homo sapiens]
Length = 576
Score = 1179 bits (3049), Expect = 0.0
Identities = 576/576 (100%), Positives = 576/576 (100%)
Query: 1 MIVFGWAVFLASRSLGQGLLLTLEEHIAHFLGTGGAATTMGNSCICRDDSGTDDSVDTQQ 60
MIVFGWAVFLASRSLGQGLLLTLEEHIAHFLGTGGAATTMGNSCICRDDSGTDDSVDTQQ
Sbjct: 1 MIVFGWAVFLASRSLGQGLLLTLEEHIAHFLGTGGAATTMGNSCICRDDSGTDDSVDTQQ 60
Query: 61 QQAENSAVPTADTRSQPRDPVRPPRRGRGPHEPRRKKQNVDGLVLDTLAVIRTLVDNDQE 120
QQAENSAVPTADTRSQPRDPVRPPRRGRGPHEPRRKKQNVDGLVLDTLAVIRTLVDNDQE
Sbjct: 61 QQAENSAVPTADTRSQPRDPVRPPRRGRGPHEPRRKKQNVDGLVLDTLAVIRTLVDNDQE 120
Query: 121 PPYSMITLHEMAETDEGWLDVVQSLIRVIPLEDPLGPAVITLLLDECPLPTKDALQKLTE 180
PPYSMITLHEMAETDEGWLDVVQSLIRVIPLEDPLGPAVITLLLDECPLPTKDALQKLTE
Sbjct: 121 PPYSMITLHEMAETDEGWLDVVQSLIRVIPLEDPLGPAVITLLLDECPLPTKDALQKLTE 180
Query: 181 ILNLNGEVACQDSSHPAKHRNTSAVLGCLAEKLAGPASIGLLSPGILEYLLQCLKLQSHP 240
ILNLNGEVACQDSSHPAKHRNTSAVLGCLAEKLAGPASIGLLSPGILEYLLQCLKLQSHP
Sbjct: 181 ILNLNGEVACQDSSHPAKHRNTSAVLGCLAEKLAGPASIGLLSPGILEYLLQCLKLQSHP 240
Query: 241 TVMLFALIALEKFAQTSENKLTISESSISDRLVTLESWANDPDYLKRQVGFCAQWSLDNL 300
TVMLFALIALEKFAQTSENKLTISESSISDRLVTLESWANDPDYLKRQVGFCAQWSLDNL
Sbjct: 241 TVMLFALIALEKFAQTSENKLTISESSISDRLVTLESWANDPDYLKRQVGFCAQWSLDNL 300
Query: 301 FLKEGRQLTYEKVNLSSIRAMLNSNDVSEYLKISPHGLEARCDASSFESVRCTFCVDAGV 360
FLKEGRQLTYEKVNLSSIRAMLNSNDVSEYLKISPHGLEARCDASSFESVRCTFCVDAGV
Sbjct: 301 FLKEGRQLTYEKVNLSSIRAMLNSNDVSEYLKISPHGLEARCDASSFESVRCTFCVDAGV 360
Query: 361 WYYEVTVVTSGVMQIGWATRDSKFLNHEGYGIGDDEYSCAYDGCRQLIWYNARSKPHIHP 420
WYYEVTVVTSGVMQIGWATRDSKFLNHEGYGIGDDEYSCAYDGCRQLIWYNARSKPHIHP
Sbjct: 361 WYYEVTVVTSGVMQIGWATRDSKFLNHEGYGIGDDEYSCAYDGCRQLIWYNARSKPHIHP 420
Query: 421 CWKEGDTVGFLLDLNEKQMIFFLNGNQLPPEKQVFSSTVSGFFAAASFMSYQQCEFNFGA 480
CWKEGDTVGFLLDLNEKQMIFFLNGNQLPPEKQVFSSTVSGFFAAASFMSYQQCEFNFGA
Sbjct: 421 CWKEGDTVGFLLDLNEKQMIFFLNGNQLPPEKQVFSSTVSGFFAAASFMSYQQCEFNFGA 480
Query: 481 KPFKYPPSMKFSTFNDYAFLTAEEKIILPRHRRLALLKQVSIRENCCSLCCDEVADTQLK 540
KPFKYPPSMKFSTFNDYAFLTAEEKIILPRHRRLALLKQVSIRENCCSLCCDEVADTQLK
Sbjct: 481 KPFKYPPSMKFSTFNDYAFLTAEEKIILPRHRRLALLKQVSIRENCCSLCCDEVADTQLK 540
Query: 541 PCGHSDLCMDCALQLETCPLCRKEIVSRIRQISHIS 576
PCGHSDLCMDCALQLETCPLCRKEIVSRIRQISHIS
Sbjct: 541 PCGHSDLCMDCALQLETCPLCRKEIVSRIRQISHIS 576
>gi|37588869 ring finger protein 123 [Homo sapiens]
Length = 1314
Score = 91.3 bits (225), Expect = 2e-18
Identities = 53/143 (37%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 345 SSFESVRCTFCVDAGVWYYEVTVVTSGVMQIGWATRDSKFLNHEGYGIGDDEYSCAYDGC 404
S+F ++R T CV G W YEV + + G+MQIGW T +F E G+GD S AYDG
Sbjct: 119 SNFGTIRSTTCVYKGKWLYEVLISSQGLMQIGWCTISCRFNQEE--GVGDTHNSYAYDGN 176
Query: 405 RQLIWYNARSKPHIHPCWKEGDTVGFLLDLNEKQMIFFLNGNQLPPEKQVFSSTVS-GFF 463
R W + + W GD V L+DL++ + F LNG L + S + +F
Sbjct: 177 RVRKWNVTTT--NYGKAWAAGDIVSCLIDLDDGTLSFCLNGVSLGTAFENLSRGLGMAYF 234
Query: 464 AAASFMSYQQCEFNFGAKPFKYP 486
A S + FNFG++P +YP
Sbjct: 235 PAISLSFKESVAFNFGSRPLRYP 257
>gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens]
Length = 4967
Score = 68.9 bits (167), Expect = 1e-11
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 353 TFCVDAGVWYYEVTVVTSGVMQIGWATRDSKFLNHEGYGIGDDEYSCAYDGCRQLIWYNA 412
T+ V AG WY+E VT+G M++GW+ + +G DE + A+DG + W+
Sbjct: 1093 TYAVKAGRWYFEFETVTAGDMRVGWSRPGCQ----PDQELGSDERAFAFDGFKAQRWH-- 1146
Query: 413 RSKPHIHPCWKEGDTVGFLLDLNEKQMIFFLNGNQL 448
+ H W+ GD VG ++D+NE M+F LNG L
Sbjct: 1147 QGNEHYGRSWQAGDVVGCMVDMNEHTMMFTLNGEIL 1182
Score = 40.8 bits (94), Expect = 0.003
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 22/146 (15%)
Query: 361 WYYEVTV------VTSGV--MQIGWATRDSKFL------NHEGYGIGDDEYSCAYDGCRQ 406
WYYE+ V VT+ +++GWA+ + G G+GDD +S +DG
Sbjct: 673 WYYELMVDHTEPFVTAEATHLRVGWASTEGYSPYPGGGEEWGGNGVGDDLFSYGFDGLHL 732
Query: 407 LIWYNAR--SKPHIHPCWKEGDTVGFLLDLNEKQMIFFLNGNQLPPEKQVFSSTVSG-FF 463
AR S P+ H + D + LDL+ + F +NG P + + + G FF
Sbjct: 733 WSGCIARTVSSPNQH-LLRTDDVISCCLDLSAPSISFRINGQ--PVQGMFENFNIDGLFF 789
Query: 464 AAASFMSYQQCEFNFGAK--PFKYPP 487
SF + + F G + FK+ P
Sbjct: 790 PVVSFSAGIKVRFLLGGRHGEFKFLP 815
>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
sapiens]
Length = 5033
Score = 68.6 bits (166), Expect = 2e-11
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 339 EARCDASSFESVRCTFCVDAGVWYYEVTVVTSGVMQIGWATRDSKFLNHEGYGIGDDEYS 398
++RCD ++ V +G WY+E VT+G M++GWA + + +G DE +
Sbjct: 1065 QSRCDRVRIFRAEKSYTVQSGRWYFEFEAVTTGEMRVGWARPELR----PDVELGADELA 1120
Query: 399 CAYDGCRQLIWYNARSKPHIHPCWKEGDTVGFLLDLNEKQMIFFLNGNQL 448
++G R W+ S+P P W+ GD VG ++DL E +IF LNG L
Sbjct: 1121 YVFNGHRGQRWH-LGSEPFGRP-WQPGDVVGCMIDLTENTIIFTLNGEVL 1168
Score = 40.8 bits (94), Expect = 0.003
Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 35/173 (20%)
Query: 361 WYYEVTV--------VTSGVMQIGWATRDSKFL------NHEGYGIGDDEYSCAYDGCRQ 406
WY+EV V + +++GWA + G G+GDD YS +DG
Sbjct: 661 WYFEVMVDEVTPFLTAQATHLRVGWALTEGYTPYPGAGEGWGGNGVGDDLYSYGFDGLH- 719
Query: 407 LIWYNARSKPHIHP---CWKEGDTVGFLLDLNEKQMIFFLNGNQLPPEKQVFSS-TVSG- 461
+W ++P P D + LDL+ + F +NG P + VF S + G
Sbjct: 720 -LWTGHVARPVTSPGQHLLAPEDVISCCLDLSVPSISFRING---CPVQGVFESFNLDGL 775
Query: 462 FFAAASFMSYQQCEFNFGAK--PFKYPPSMKFSTFNDYAFLTAEEKIILPRHR 512
FF SF + + F G + FK+ P ++ ++ +LPR R
Sbjct: 776 FFPVVSFSAGVKVRFLLGGRHGEFKFLPPPGYAPCHE---------AVLPRER 819
>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
sapiens]
Length = 5038
Score = 68.6 bits (166), Expect = 2e-11
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 339 EARCDASSFESVRCTFCVDAGVWYYEVTVVTSGVMQIGWATRDSKFLNHEGYGIGDDEYS 398
++RCD ++ V +G WY+E VT+G M++GWA + + +G DE +
Sbjct: 1065 QSRCDRVRIFRAEKSYTVQSGRWYFEFEAVTTGEMRVGWARPELR----PDVELGADELA 1120
Query: 399 CAYDGCRQLIWYNARSKPHIHPCWKEGDTVGFLLDLNEKQMIFFLNGNQL 448
++G R W+ S+P P W+ GD VG ++DL E +IF LNG L
Sbjct: 1121 YVFNGHRGQRWH-LGSEPFGRP-WQPGDVVGCMIDLTENTIIFTLNGEVL 1168
Score = 40.8 bits (94), Expect = 0.003
Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 35/173 (20%)
Query: 361 WYYEVTV--------VTSGVMQIGWATRDSKFL------NHEGYGIGDDEYSCAYDGCRQ 406
WY+EV V + +++GWA + G G+GDD YS +DG
Sbjct: 661 WYFEVMVDEVTPFLTAQATHLRVGWALTEGYTPYPGAGEGWGGNGVGDDLYSYGFDGLH- 719
Query: 407 LIWYNARSKPHIHP---CWKEGDTVGFLLDLNEKQMIFFLNGNQLPPEKQVFSS-TVSG- 461
+W ++P P D + LDL+ + F +NG P + VF S + G
Sbjct: 720 -LWTGHVARPVTSPGQHLLAPEDVISCCLDLSVPSISFRING---CPVQGVFESFNLDGL 775
Query: 462 FFAAASFMSYQQCEFNFGAK--PFKYPPSMKFSTFNDYAFLTAEEKIILPRHR 512
FF SF + + F G + FK+ P ++ ++ +LPR R
Sbjct: 776 FFPVVSFSAGVKVRFLLGGRHGEFKFLPPPGYAPCHE---------AVLPRER 819
>gi|126032338 ryanodine receptor 3 [Homo sapiens]
Length = 4870
Score = 62.8 bits (151), Expect = 8e-10
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 343 DASSFESVRCTFCVDAGVWYYEVTVVTSGVMQIGWATRDSKFLNHEGYGIGDDEYSCAYD 402
D F V ++ V +G WY+E VVT G M++GWA + +G D+ + ++
Sbjct: 1069 DKIRFFRVERSYAVRSGKWYFEFEVVTGGDMRVGWARPGCR----PDVELGADDQAFVFE 1124
Query: 403 GCRQLIWYNARSKPHIHPCWKEGDTVGFLLDLNEKQMIFFLNGNQLPPEK 452
G R W+ + + W+ GD VG +++L++ MIF LNG L K
Sbjct: 1125 GNRGQRWH--QGSGYFGRTWQPGDVVGCMINLDDASMIFTLNGELLITNK 1172
Score = 37.0 bits (84), Expect = 0.049
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 22/166 (13%)
Query: 361 WYYEVTV--------VTSGVMQIGWATRDSKFLNHEG-------YGIGDDEYSCAYDGCR 405
WY+E+ + +++GWA+ S + + G G+GDD YS +DG
Sbjct: 660 WYFELIIDQVDPFLTAEPTHLRVGWAS-SSGYAPYPGGGEGWGGNGVGDDLYSYGFDGLH 718
Query: 406 QLIWYNARSKPHIHP-CWKEGDTVGFLLDLNEKQMIFFLNGNQLPPEKQVFSSTVSGFFA 464
R+ I+ + D V LDL + F +NG + + F +T FF
Sbjct: 719 LWSGRIPRAVASINQHLLRSDDVVSCCLDLGVPSISFRINGQPVQGMFENF-NTDGLFFP 777
Query: 465 AASFMSYQQCEFNFGAK--PFKYPPSMKFSTFNDYAFLTAEEKIIL 508
SF + + F G + FK+ P ++ Y L +EK+ L
Sbjct: 778 VMSFSAGVKVRFLMGGRHGEFKFLPPSGYAPC--YEALLPKEKMRL 821
>gi|38788243 myosin regulatory light chain interacting protein [Homo
sapiens]
Length = 445
Score = 54.3 bits (129), Expect = 3e-07
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 527 CSLCCDEVADTQLKPCGHSDLCMDCALQLETCPLCRKEIVSRIRQISHI 575
C +CC+E ++ PCGH+ C CA QL++CP+CR SR+ + H+
Sbjct: 387 CMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCR----SRVEHVQHV 431
>gi|33946285 baculoviral IAP repeat-containing protein 3 [Homo
sapiens]
Length = 604
Score = 52.4 bits (124), Expect = 1e-06
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 496 DYAFLTAEEKIILPRHRRLALLKQVSIRENCCSLCCDEVADTQLKPCGHSDLCMDCALQL 555
D ++ E+ LP +L L++ E C +C D+ PCGH +C DCA L
Sbjct: 530 DIKYIPTEDVSDLPVEEQLRRLQE----ERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSL 585
Query: 556 ETCPLCRKEIVSRIR 570
CP+CR I +R
Sbjct: 586 RKCPICRSTIKGTVR 600
>gi|4502139 baculoviral IAP repeat-containing protein 3 [Homo
sapiens]
Length = 604
Score = 52.4 bits (124), Expect = 1e-06
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 496 DYAFLTAEEKIILPRHRRLALLKQVSIRENCCSLCCDEVADTQLKPCGHSDLCMDCALQL 555
D ++ E+ LP +L L++ E C +C D+ PCGH +C DCA L
Sbjct: 530 DIKYIPTEDVSDLPVEEQLRRLQE----ERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSL 585
Query: 556 ETCPLCRKEIVSRIR 570
CP+CR I +R
Sbjct: 586 RKCPICRSTIKGTVR 600
>gi|4826686 DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 [Homo sapiens]
Length = 740
Score = 50.1 bits (118), Expect = 6e-06
Identities = 45/202 (22%), Positives = 83/202 (41%), Gaps = 26/202 (12%)
Query: 302 LKEGRQLTYEKVNLSSIRAMLNSNDVSEYLKISPH--GLEARC----DASSFESVRCTFC 355
LK+ ++ K + + ++LN ++ Y + S G + C + + R T
Sbjct: 68 LKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKG 127
Query: 356 VDAGVWYYEVTVVTSGVMQIGWATRDSKFLNHEGYGIGDDEYSCAYDGC------RQLIW 409
+ G YYEV+ G+ ++GW+T + +G D++ + G +Q
Sbjct: 128 LMKGKHYYEVSCHDQGLCRVGWSTMQASL------DLGTDKFGFGFGGTGKKSHNKQFDN 181
Query: 410 YNARSKPHIHPCWKEGDTVGFLLDLNEKQMIFFLNGNQLPPEKQVFSSTVSGFFAAASFM 469
Y H DT+G LD+++ + F NG L ++ + A +
Sbjct: 182 YGEEFTMH--------DTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVL 233
Query: 470 SYQQCEFNFGAKPFKYPPSMKF 491
+ +FNFG + FK+PP F
Sbjct: 234 KNAELKFNFGEEEFKFPPKDGF 255
>gi|4502141 baculoviral IAP repeat-containing protein 2 [Homo
sapiens]
Length = 618
Score = 49.3 bits (116), Expect = 1e-05
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 488 SMKFSTFNDYAFLTAEEKIILPRHRRLALLKQVSIRENCCSLCCDEVADTQLKPCGHSDL 547
+MK+ D + L+ EE++ RRL E C +C D+ PCGH +
Sbjct: 544 NMKYIPTEDVSGLSLEEQL-----RRLQ-------EERTCKVCMDKEVSVVFIPCGHLVV 591
Query: 548 CMDCALQLETCPLCRKEIVSRIR 570
C +CA L CP+CR I +R
Sbjct: 592 CQECAPSLRKCPICRGIIKGTVR 614
>gi|62865649 rififylin [Homo sapiens]
Length = 363
Score = 47.0 bits (110), Expect = 5e-05
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 522 IRENCCSLCCDEVADTQLKPCGHSDLCMDCALQLETCPLCRKEIVSRI 569
+ EN C +C D D L CGH C C ++ CP+CR+ ++ +
Sbjct: 311 LEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAV 358
>gi|17432433 rififylin [Homo sapiens]
Length = 363
Score = 47.0 bits (110), Expect = 5e-05
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 522 IRENCCSLCCDEVADTQLKPCGHSDLCMDCALQLETCPLCRKEIVSRI 569
+ EN C +C D D L CGH C C ++ CP+CR+ ++ +
Sbjct: 311 LEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAV 358
>gi|11545910 livin inhibitor of apoptosis isoform beta [Homo
sapiens]
Length = 280
Score = 47.0 bits (110), Expect = 5e-05
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 524 ENCCSLCCDEVADTQLKPCGHSDLCMDCALQLETCPLCRKEIVSRIR 570
E C +C D PCGH +C +CA L+ CP+CR + SR+R
Sbjct: 231 ERTCKVCLDRAVSIVFVPCGHL-VCAECAPGLQLCPICRAPVRSRVR 276
>gi|21536421 livin inhibitor of apoptosis isoform alpha [Homo
sapiens]
Length = 298
Score = 47.0 bits (110), Expect = 5e-05
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 524 ENCCSLCCDEVADTQLKPCGHSDLCMDCALQLETCPLCRKEIVSRIR 570
E C +C D PCGH +C +CA L+ CP+CR + SR+R
Sbjct: 249 ERTCKVCLDRAVSIVFVPCGHL-VCAECAPGLQLCPICRAPVRSRVR 294
>gi|53729363 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 46.6 bits (109), Expect = 6e-05
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 519 QVSIRENCCSLCCDEVADTQLKPCGHSDLCMDCALQLETCPLCRKEIVSRIR 570
++ ++ + C +C + A CGH C C L TCPLCR++I R+R
Sbjct: 667 ELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLR 718
>gi|53729361 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 46.6 bits (109), Expect = 6e-05
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 519 QVSIRENCCSLCCDEVADTQLKPCGHSDLCMDCALQLETCPLCRKEIVSRIR 570
++ ++ + C +C + A CGH C C L TCPLCR++I R+R
Sbjct: 667 ELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLR 718
>gi|53729359 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 46.6 bits (109), Expect = 6e-05
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 519 QVSIRENCCSLCCDEVADTQLKPCGHSDLCMDCALQLETCPLCRKEIVSRIR 570
++ ++ + C +C + A CGH C C L TCPLCR++I R+R
Sbjct: 667 ELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLR 718
>gi|37595539 ring finger protein 34 isoform 1 [Homo sapiens]
Length = 373
Score = 45.1 bits (105), Expect = 2e-04
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 524 ENCCSLCCDEVADTQLKPCGHSDLCMDCALQLETCPLCRKEIVSRI 569
++ C +C D V D L CGH C C ++ CP+CR+ +V +
Sbjct: 323 DSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAV 368
>gi|37595537 ring finger protein 34 isoform 2 [Homo sapiens]
Length = 372
Score = 45.1 bits (105), Expect = 2e-04
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 524 ENCCSLCCDEVADTQLKPCGHSDLCMDCALQLETCPLCRKEIVSRI 569
++ C +C D V D L CGH C C ++ CP+CR+ +V +
Sbjct: 322 DSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAV 367
>gi|217416388 neuralized homolog 1B [Homo sapiens]
Length = 555
Score = 43.1 bits (100), Expect = 7e-04
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 522 IRENCCSLCCDEVADTQLKPCGHSDLCMDCALQLE-----TCPLCRKEIVSRIR 570
I+ C++C D DT + CGH LC C L+L+ CP+CR+ I I+
Sbjct: 498 IKNGECTVCFDGEVDTVIYTCGHMCLCHSCGLRLKRQARACCPICRRPIKDVIK 551
>gi|223278368 neuralized-like [Homo sapiens]
Length = 574
Score = 42.4 bits (98), Expect = 0.001
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 527 CSLCCDEVADTQLKPCGHSDLCMDCALQLE-----TCPLCRKEIVSRIR 570
C++C + DT + CGH LC C L+L+ CP+CR+ I I+
Sbjct: 521 CTICYEHAVDTVIYTCGHMCLCYACGLRLKKALHACCPICRRPIKDIIK 569
>gi|45594312 TNF receptor-associated factor 7 [Homo sapiens]
Length = 670
Score = 41.6 bits (96), Expect = 0.002
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 514 LALLKQVSIRENCCSLCCDEVADTQLKPCGHSDLCMDCALQLETCPLCRKEIVSRIRQIS 573
L +Q S++ CC LCC D + CGH+ C CAL+ E CP+ ++ + I+
Sbjct: 119 LVFAEQPSVKL-CCQLCCSVFKDPVITTCGHT-FCRRCALKSEKCPVDNVKLTVVVNNIA 176
>gi|30348954 mindbomb homolog 1 [Homo sapiens]
Length = 1006
Score = 41.6 bits (96), Expect = 0.002
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 527 CSLCCDEVADTQLKPCGHSDLCMDCALQLETCPLCRKEIVSRIR 570
C +C D DT PCGH C C+ +++ C +C++++ SR +
Sbjct: 819 CMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLICKEQVQSRTK 862
Score = 39.7 bits (91), Expect = 0.008
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 509 PRHRRLALLK-QVSIRENC--CSLCCDEVADTQLKPCGHSDLCMDCALQLETCPLCRKEI 565
PR ++ + K QV R C +C D+ A +PCGH C +CA ++ C CR +
Sbjct: 845 PRVKKCLICKEQVQSRTKIEECVVCSDKKAAVLFQPCGHMCACENCANLMKKCVQCRAVV 904
Query: 566 VSRI 569
R+
Sbjct: 905 ERRV 908
Score = 34.3 bits (77), Expect = 0.32
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 524 ENCCSLCCDEVADTQLKPCGHSDLCMDCALQLETCPLCRKEIVSRI 569
+ C +C D + + + CGH C C ++ CP+CRK I RI
Sbjct: 960 QTMCPVCLDRLKN-MIFLCGHGT-CQLCGDRMSECPICRKAIERRI 1003
>gi|47716512 mex-3 homolog B [Homo sapiens]
Length = 569
Score = 40.4 bits (93), Expect = 0.004
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 527 CSLCCDEVADTQLKPCGHSDLCMDCALQL-----ETCPLCRKEIVSRIRQIS 573
CS+C + L PCGH+ CM+CA ++ CP+C + IR S
Sbjct: 518 CSVCFESEVIAALVPCGHNLFCMECANRICEKSEPECPVCHTAVTQAIRIFS 569
>gi|214010238 mahogunin, ring finger 1 isoform 4 [Homo sapiens]
Length = 531
Score = 40.0 bits (92), Expect = 0.006
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 521 SIRENCCSLCCDEVADTQLKPCGHSDLCMDCA----LQLETCPLCR 562
S N C +C ++ DT + PC H LC CA Q CP+CR
Sbjct: 273 SDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICR 318
>gi|214010236 mahogunin, ring finger 1 isoform 3 [Homo sapiens]
Length = 552
Score = 40.0 bits (92), Expect = 0.006
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 521 SIRENCCSLCCDEVADTQLKPCGHSDLCMDCA----LQLETCPLCR 562
S N C +C ++ DT + PC H LC CA Q CP+CR
Sbjct: 272 SDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICR 317
>gi|214010234 mahogunin, ring finger 1 isoform 2 [Homo sapiens]
Length = 555
Score = 40.0 bits (92), Expect = 0.006
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 521 SIRENCCSLCCDEVADTQLKPCGHSDLCMDCA----LQLETCPLCR 562
S N C +C ++ DT + PC H LC CA Q CP+CR
Sbjct: 273 SDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICR 318
>gi|44917608 mahogunin, ring finger 1 isoform 1 [Homo sapiens]
Length = 576
Score = 40.0 bits (92), Expect = 0.006
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 521 SIRENCCSLCCDEVADTQLKPCGHSDLCMDCA----LQLETCPLCR 562
S N C +C ++ DT + PC H LC CA Q CP+CR
Sbjct: 272 SDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICR 317
>gi|157412282 ash2-like isoform b [Homo sapiens]
Length = 534
Score = 39.7 bits (91), Expect = 0.008
Identities = 51/217 (23%), Positives = 81/217 (37%), Gaps = 58/217 (26%)
Query: 319 RAMLNSNDVSEYLKISPHGLEARCDASSFESVRCTFCVDAGVWYYEVTV---VTSGVMQI 375
R +L +D + LKIS L + VR + V G WY+E+TV ++
Sbjct: 286 RVLLALHDRAPQLKISDDRLTV-VGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARL 344
Query: 376 GWATRDSKFLNHEGYGIGDDEYSCAYDGCRQLIWYNARSKPHIHPCWKEGDTVGFLLDLN 435
GW S+ L + +G D++S ++ + ++ + K H + +GD +GF ++L
Sbjct: 345 GW----SQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGK-HYSSGYGQGDVLGFYINLP 399
Query: 436 E--------------------------------------------KQMIFFLNG-NQLPP 450
E ++IF+ NG NQ
Sbjct: 400 EDTETAKSLPDTYKDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVA 459
Query: 451 EKQVFSSTVSGFFAAASFMSYQQCEFNFGAKPFKYPP 487
K +F +F A S NFG FKYPP
Sbjct: 460 YKDIFEGV---YFPAISLYKSCTVSINFG-PCFKYPP 492
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,967,616
Number of Sequences: 37866
Number of extensions: 1041963
Number of successful extensions: 3502
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 3423
Number of HSP's gapped (non-prelim): 117
length of query: 576
length of database: 18,247,518
effective HSP length: 108
effective length of query: 468
effective length of database: 14,157,990
effective search space: 6625939320
effective search space used: 6625939320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.