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Search of human proteins with 4507609
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507609 tumor necrosis factor (ligand) superfamily, member 9
[Homo sapiens]
(254 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507609 tumor necrosis factor (ligand) superfamily, member 9 ... 503 e-143
gi|25952144 tumor necrosis factor ligand superfamily, member 14 ... 47 2e-05
gi|25952147 tumor necrosis factor ligand superfamily, member 14 ... 43 3e-04
gi|5729929 matrix metalloproteinase 24 preproprotein [Homo sapiens] 33 0.31
gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo sapi... 31 0.91
gi|4557595 forkhead box F2 [Homo sapiens] 31 0.91
gi|194272180 plexin B1 [Homo sapiens] 31 1.2
gi|40254442 plexin B1 [Homo sapiens] 31 1.2
gi|26051250 TNFSF12-TNFSF13 protein [Homo sapiens] 30 2.0
gi|17402888 neuronal pentraxin receptor [Homo sapiens] 30 2.7
gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens] 30 2.7
gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens] 30 2.7
gi|87298843 ethanolamine kinase 1 isoform B [Homo sapiens] 30 2.7
gi|10092615 ethanolamine kinase 1 isoform A [Homo sapiens] 30 2.7
gi|68448528 mesothelin-like [Homo sapiens] 30 2.7
gi|4507597 tumor necrosis factor (ligand) superfamily, member 12... 29 3.5
gi|239755501 PREDICTED: hypothetical protein [Homo sapiens] 29 4.5
gi|239750029 PREDICTED: hypothetical protein XP_002347239 [Homo ... 29 4.5
gi|239744340 PREDICTED: hypothetical protein XP_002343099 [Homo ... 29 4.5
gi|5902108 SRY-box 21 [Homo sapiens] 29 4.5
gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens] 28 7.7
gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo ... 28 7.7
gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo ... 28 7.7
gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens] 28 7.7
gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens] 28 7.7
gi|239756978 PREDICTED: hypothetical protein XP_002345135 [Homo ... 28 7.7
gi|169216359 PREDICTED: hypothetical protein [Homo sapiens] 28 7.7
gi|169216600 PREDICTED: hypothetical protein [Homo sapiens] 28 7.7
gi|91206396 taste receptor, type 1, member 3 [Homo sapiens] 28 7.7
gi|150417973 supervillin isoform 2 [Homo sapiens] 28 7.7
>gi|4507609 tumor necrosis factor (ligand) superfamily, member 9
[Homo sapiens]
Length = 254
Score = 503 bits (1296), Expect = e-143
Identities = 254/254 (100%), Positives = 254/254 (100%)
Query: 1 MEYASDASLDPEAPWPPAPRARACRVLPWALVAGLLLLLLLAAACAVFLACPWAVSGARA 60
MEYASDASLDPEAPWPPAPRARACRVLPWALVAGLLLLLLLAAACAVFLACPWAVSGARA
Sbjct: 1 MEYASDASLDPEAPWPPAPRARACRVLPWALVAGLLLLLLLAAACAVFLACPWAVSGARA 60
Query: 61 SPGSAASPRLREGPELSPDDPAGLLDLRQGMFAQLVAQNVLLIDGPLSWYSDPGLAGVSL 120
SPGSAASPRLREGPELSPDDPAGLLDLRQGMFAQLVAQNVLLIDGPLSWYSDPGLAGVSL
Sbjct: 61 SPGSAASPRLREGPELSPDDPAGLLDLRQGMFAQLVAQNVLLIDGPLSWYSDPGLAGVSL 120
Query: 121 TGGLSYKEDTKELVVAKAGVYYVFFQLELRRVVAGEGSGSVSLALHLQPLRSAAGAAALA 180
TGGLSYKEDTKELVVAKAGVYYVFFQLELRRVVAGEGSGSVSLALHLQPLRSAAGAAALA
Sbjct: 121 TGGLSYKEDTKELVVAKAGVYYVFFQLELRRVVAGEGSGSVSLALHLQPLRSAAGAAALA 180
Query: 181 LTVDLPPASSEARNSAFGFQGRLLHLSAGQRLGVHLHTEARARHAWQLTQGATVLGLFRV 240
LTVDLPPASSEARNSAFGFQGRLLHLSAGQRLGVHLHTEARARHAWQLTQGATVLGLFRV
Sbjct: 181 LTVDLPPASSEARNSAFGFQGRLLHLSAGQRLGVHLHTEARARHAWQLTQGATVLGLFRV 240
Query: 241 TPEIPAGLPSPRSE 254
TPEIPAGLPSPRSE
Sbjct: 241 TPEIPAGLPSPRSE 254
>gi|25952144 tumor necrosis factor ligand superfamily, member 14
isoform 1 precursor [Homo sapiens]
Length = 240
Score = 47.0 bits (110), Expect = 2e-05
Identities = 69/223 (30%), Positives = 91/223 (40%), Gaps = 44/223 (19%)
Query: 20 RARACRVLPWALVAGLLLLLLLAAACAV----FLACPWAVSGARASPGSAASPRLREGPE 75
R ++C V A V LLLLL+ A AV L W RL E
Sbjct: 29 RRQSCSV---ARVGLGLLLLLMGAGLAVQGWFLLQLHW---------------RLGEMVT 70
Query: 76 LSPDDPAG----LLDLRQGM----FAQLVAQNVLLID--GPLSWYSDPGLAGVSLTGGLS 125
PD PAG L+ R+ A L N L GPL W + GLA + GLS
Sbjct: 71 RLPDGPAGSWEQLIQERRSHEVNPAAHLTGANSSLTGSGGPLLWETQLGLAFLR---GLS 127
Query: 126 YKEDTKELVVAKAGVYYVFFQLELRRVVAGEGSGSVSLALHLQPLRSAAGAAALALTVDL 185
Y + LVV KAG YY++ +++L V G G S H R+ L L V
Sbjct: 128 YHDGA--LVVTKAGYYYIYSKVQLGGV--GCPLGLASTITHGLYKRTPRYPEELELLVSQ 183
Query: 186 PPASSEARNSA-----FGFQGRLLHLSAGQRLGVHLHTEARAR 223
A +S+ F G ++HL AG+++ V + E R
Sbjct: 184 QSPCGRATSSSRVWWDSSFLGGVVHLEAGEKVVVRVLDERLVR 226
>gi|25952147 tumor necrosis factor ligand superfamily, member 14
isoform 2 [Homo sapiens]
Length = 204
Score = 42.7 bits (99), Expect = 3e-04
Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 105 GPLSWYSDPGLAGVSLTGGLSYKEDTKELVVAKAGVYYVFFQLELRRVVAGEGSGSVSLA 164
GPL W + GLA + GLSY + LVV KAG YY++ +++L V G G S
Sbjct: 74 GPLLWETQLGLAFLR---GLSYHDGA--LVVTKAGYYYIYSKVQLGGV--GCPLGLASTI 126
Query: 165 LHLQPLRSAAGAAALALTVDLPPASSEARNSA-----FGFQGRLLHLSAGQRLGVHLHTE 219
H R+ L L V A +S+ F G ++HL AG+ + V + E
Sbjct: 127 THGLYKRTPRYPEELELLVSQQSPCGRATSSSRVWWDSSFLGGVVHLEAGEEVVVRVLDE 186
Query: 220 ARAR 223
R
Sbjct: 187 RLVR 190
>gi|5729929 matrix metalloproteinase 24 preproprotein [Homo
sapiens]
Length = 645
Score = 32.7 bits (73), Expect = 0.31
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 11 PEAPWPPAPRARACRVLPWALVAGLLLLLLLAAACAVFLACPWAVSGARASPGS 64
P P PP P +A R W V G LLLLLL A C + P A A A+ G+
Sbjct: 11 PGPPPPPPPPGQAPRWSRWR-VPGRLLLLLLPALCCL----PGAARAAAAAAGA 59
>gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo
sapiens]
Length = 267
Score = 31.2 bits (69), Expect = 0.91
Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 24/80 (30%)
Query: 14 PWPPAPRARACRVLPWA---------LVAGLLLLLLLAAACAVFLACPW----------A 54
P PP P AC P A + GLLLLLL+ A+C C W
Sbjct: 182 PQPPRPARPACGSSPMAEQLALVIGGTIGGLLLLLLIGASC-----CLWRRFCATLTYEE 236
Query: 55 VSGARASPGSAASPRLREGP 74
+ G A +AAS R+ P
Sbjct: 237 LPGTPAMATTAASSGQRDRP 256
>gi|4557595 forkhead box F2 [Homo sapiens]
Length = 444
Score = 31.2 bits (69), Expect = 0.91
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 16 PPAPRARACRVLPWALVAGLLLLLLLAAACAVFLACPWAVSGARASPGSAAS 67
PPAP RAC +P AL A L+ AAA A A P S + +S ++ +
Sbjct: 8 PPAPLRRACSPVPGALQAALMSPPPAAAAAAA--AAPETTSSSSSSSSASCA 57
>gi|194272180 plexin B1 [Homo sapiens]
Length = 2135
Score = 30.8 bits (68), Expect = 1.2
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 52 PWAVSGARASPGSAASPRLREGPELSPDDPAG 83
PWA SG+ +SPGS SP E SP + G
Sbjct: 738 PWAGSGSISSPGSTGSPLHEEPSPPSPQNGPG 769
>gi|40254442 plexin B1 [Homo sapiens]
Length = 2135
Score = 30.8 bits (68), Expect = 1.2
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 52 PWAVSGARASPGSAASPRLREGPELSPDDPAG 83
PWA SG+ +SPGS SP E SP + G
Sbjct: 738 PWAGSGSISSPGSTGSPLHEEPSPPSPQNGPG 769
>gi|26051250 TNFSF12-TNFSF13 protein [Homo sapiens]
Length = 330
Score = 30.0 bits (66), Expect = 2.0
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 23/128 (17%)
Query: 103 IDGPLSWYSDPGLAGVSLTGGLSYKEDTKELVVAKAGVYYVFFQ----LEL--------- 149
+DG +S + + A ++ + L Y E +V +AG+YY++ Q LE
Sbjct: 126 VDGTVSGWEE---ARINSSSPLRYNRQIGEFIVTRAGLYYLYCQSSDALEAWENGERSRK 182
Query: 150 RRVVAGEGSGSVSLALHLQPLRSAAGAAALALTVDLPPASSEARN-SAFGFQGRLLHLSA 208
RR V + LHL P+ + + + V PA R A G+ R+
Sbjct: 183 RRAVLTQKQKKQHSVLHLVPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRI----- 237
Query: 209 GQRLGVHL 216
Q GV+L
Sbjct: 238 -QDAGVYL 244
>gi|17402888 neuronal pentraxin receptor [Homo sapiens]
Length = 500
Score = 29.6 bits (65), Expect = 2.7
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 31 LVAGLLLLLLLAAACAVFLACPWAVSGARASPGSAASPRLREGPELSP 78
L AG+L L A + + P A S ARA PG A + + G SP
Sbjct: 8 LAAGMLAFL--GAVICIIASVPLAASPARALPGGADNASVASGAAASP 53
>gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens]
Length = 814
Score = 29.6 bits (65), Expect = 2.7
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 153 VAGEGSGSVSLALHLQPLRSAAGAAALALTVDLPPASSEARNS 195
+AG G+ ++SL LHL L AAGA A+ + P + A +S
Sbjct: 1 MAGVGAAALSLLLHLGALALAAGAEGGAVPREPPGQQTTAHSS 43
>gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens]
Length = 1503
Score = 29.6 bits (65), Expect = 2.7
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 153 VAGEGSGSVSLALHLQPLRSAAGAAALALTVDLPPASSEARNS 195
+AG G+ ++SL LHL L AAGA A+ + P + A +S
Sbjct: 1 MAGVGAAALSLLLHLGALALAAGAEGGAVPREPPGQQTTAHSS 43
>gi|87298843 ethanolamine kinase 1 isoform B [Homo sapiens]
Length = 258
Score = 29.6 bits (65), Expect = 2.7
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 11 PEAPWPPA-PRARACRVLPWALVAGLLLLLLLAAACAVFLACPWAVSG-ARASPGSAASP 68
P P PPA PR R +L A +L++ +A V A WA++ PGS P
Sbjct: 45 PPVPAPPALPRGRPGTEGSTSLSAPAVLVVAVAVVVVVVSAVAWAMANYIHVPPGSPEVP 104
Query: 69 RL 70
+L
Sbjct: 105 KL 106
>gi|10092615 ethanolamine kinase 1 isoform A [Homo sapiens]
Length = 452
Score = 29.6 bits (65), Expect = 2.7
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 11 PEAPWPPA-PRARACRVLPWALVAGLLLLLLLAAACAVFLACPWAVSG-ARASPGSAASP 68
P P PPA PR R +L A +L++ +A V A WA++ PGS P
Sbjct: 45 PPVPAPPALPRGRPGTEGSTSLSAPAVLVVAVAVVVVVVSAVAWAMANYIHVPPGSPEVP 104
Query: 69 RL 70
+L
Sbjct: 105 KL 106
>gi|68448528 mesothelin-like [Homo sapiens]
Length = 1053
Score = 29.6 bits (65), Expect = 2.7
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 10 DPEAPWPPAPRARACRVLPWAL-VAGLLLLLLLAAACA 46
DP+AP P ++P AL +GL LLL LAA C+
Sbjct: 261 DPDAPAPAPAGTLTAHLIPGALQSSGLTLLLSLAAHCS 298
>gi|4507597 tumor necrosis factor (ligand) superfamily, member 12
precursor [Homo sapiens]
Length = 249
Score = 29.3 bits (64), Expect = 3.5
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 103 IDGPLSWYSDPGLAGVSLTGGLSYKEDTKELVVAKAGVYYVFFQL 147
+DG +S + + A ++ + L Y E +V +AG+YY++ Q+
Sbjct: 126 VDGTVSGWEE---ARINSSSPLRYNRQIGEFIVTRAGLYYLYCQV 167
>gi|239755501 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 28.9 bits (63), Expect = 4.5
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 3 YASDASLDPEAPWPPAPRARAC-RVLPWALVAGLLLLLLLAAACAVFLACPWAVSGARAS 61
+ S +++P P PP P + R L WA + GL + LL + V + +G
Sbjct: 45 FLSADNVEPSPP-PPTPTSMGKERGLSWAGLPGLTMCLLQESLAPVLAGASLSWTGRPLW 103
Query: 62 PGSAASP 68
PG+A P
Sbjct: 104 PGAAPCP 110
>gi|239750029 PREDICTED: hypothetical protein XP_002347239 [Homo
sapiens]
Length = 139
Score = 28.9 bits (63), Expect = 4.5
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 3 YASDASLDPEAPWPPAPRARAC-RVLPWALVAGLLLLLLLAAACAVFLACPWAVSGARAS 61
+ S +++P P PP P + R L WA + GL + LL + V + +G
Sbjct: 45 FLSADNVEPSPP-PPTPTSMGKERGLSWAGLPGLTMCLLQESLAPVLAGASLSWTGRPLW 103
Query: 62 PGSAASP 68
PG+A P
Sbjct: 104 PGAAPCP 110
>gi|239744340 PREDICTED: hypothetical protein XP_002343099 [Homo
sapiens]
Length = 139
Score = 28.9 bits (63), Expect = 4.5
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 3 YASDASLDPEAPWPPAPRARAC-RVLPWALVAGLLLLLLLAAACAVFLACPWAVSGARAS 61
+ S +++P P PP P + R L WA + GL + LL + V + +G
Sbjct: 45 FLSADNVEPSPP-PPTPTSMGKERGLSWAGLPGLTMCLLQESLAPVLAGASLSWTGRPLW 103
Query: 62 PGSAASP 68
PG+A P
Sbjct: 104 PGAAPCP 110
>gi|5902108 SRY-box 21 [Homo sapiens]
Length = 276
Score = 28.9 bits (63), Expect = 4.5
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 154 AGEGSGSVSLALHLQPLRSAAGAAALALTVDLPPASSEARNSA 196
AG G G V +L P ++AA AAA A V P +++ A +A
Sbjct: 119 AGAGGGLVPESLLANPEKAAAAAAAAAARVFFPQSAAAAAAAA 161
>gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]
Length = 365
Score = 28.1 bits (61), Expect = 7.7
Identities = 27/87 (31%), Positives = 31/87 (35%), Gaps = 16/87 (18%)
Query: 4 ASDASLDPEAPWPPAPRARACRVL-----PWALVAGLLLLLLLAAACAVFLACPWAVSG- 57
AS S P PA R + PW + GL CA CPW +G
Sbjct: 280 ASSLSASLRPPGAPATFLRPSPIPCSSPGPWQSLCGL------GPPCA---GCPWPTAGP 330
Query: 58 ARASPGSAASPRLREGPELSPDDPAGL 84
R SPG SP G + DP L
Sbjct: 331 GRRSPG-GTSPERSPGTARARGDPTSL 356
>gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo
sapiens]
Length = 493
Score = 28.1 bits (61), Expect = 7.7
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 16 PPAPRARACRVLPWALVAGLLLLLLLAAACAVFLACPWAVSGARASPGSAA---SPRLRE 72
PP P+A A L L+ L AAA A A AV+ A +P +A+ + L++
Sbjct: 70 PPTPQAPAAEPLQVDLLPVLAAAQESAAAAAAAAAAAAAVAAAPPAPAAASTVDTAALKQ 129
Query: 73 GPELSPDDP 81
P P P
Sbjct: 130 PPAPPPPPP 138
>gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo
sapiens]
Length = 477
Score = 28.1 bits (61), Expect = 7.7
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 16 PPAPRARACRVLPWALVAGLLLLLLLAAACAVFLACPWAVSGARASPGSAA---SPRLRE 72
PP P+A A L L+ L AAA A A AV+ A +P +A+ + L++
Sbjct: 70 PPTPQAPAAEPLQVDLLPVLAAAQESAAAAAAAAAAAAAVAAAPPAPAAASTVDTAALKQ 129
Query: 73 GPELSPDDP 81
P P P
Sbjct: 130 PPAPPPPPP 138
>gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens]
Length = 1123
Score = 28.1 bits (61), Expect = 7.7
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 13/84 (15%)
Query: 169 PLRSAAGAAALALTVDLPPASSEARNSAFGFQGRLL----HLSAGQRLGVHLHTEARARH 224
PL S+ +L + LP N + G Q + HL+A +L E +A
Sbjct: 354 PLDSSPNQFSLYTSPSLP-------NISLGLQATVTVTNSHLTASPKLSTQQEAERQALQ 406
Query: 225 AWQLTQGATVLGLFRVTPEIPAGL 248
+ L QG T+ G F T IP L
Sbjct: 407 S--LRQGGTLTGKFMSTSSIPGCL 428
>gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens]
Length = 1122
Score = 28.1 bits (61), Expect = 7.7
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 13/84 (15%)
Query: 169 PLRSAAGAAALALTVDLPPASSEARNSAFGFQGRLL----HLSAGQRLGVHLHTEARARH 224
PL S+ +L + LP N + G Q + HL+A +L E +A
Sbjct: 353 PLDSSPNQFSLYTSPSLP-------NISLGLQATVTVTNSHLTASPKLSTQQEAERQALQ 405
Query: 225 AWQLTQGATVLGLFRVTPEIPAGL 248
+ L QG T+ G F T IP L
Sbjct: 406 S--LRQGGTLTGKFMSTSSIPGCL 427
>gi|239756978 PREDICTED: hypothetical protein XP_002345135 [Homo
sapiens]
Length = 187
Score = 28.1 bits (61), Expect = 7.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 57 GARASPGSAASPRLREGPELSP---DDPAGLLDLRQG 90
G R + A PR EGPE+ P + P GL ++R G
Sbjct: 63 GQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGG 99
>gi|169216359 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 28.1 bits (61), Expect = 7.7
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 14 PWPPAPRARACRVLPWALVAGLLLLLLLAAACA 46
P+ P P WA LLLL +LAA CA
Sbjct: 22 PYVPTPAPPPSLAPTWAYPCSLLLLRILAARCA 54
>gi|169216600 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 28.1 bits (61), Expect = 7.7
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 14 PWPPAPRARACRVLPWALVAGLLLLLLLAAACA 46
P+ P P WA LLLL +LAA CA
Sbjct: 22 PYVPTPAPPPSLAPTWAYPCSLLLLRILAARCA 54
>gi|91206396 taste receptor, type 1, member 3 [Homo sapiens]
Length = 852
Score = 28.1 bits (61), Expect = 7.7
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 4 ASDASLDPEAPWPPAPRARACRVLPWALVAGLLLLLLLAAACAVFL 49
A++ ++ E P A R C PWA + LL +L+ A C +L
Sbjct: 655 AAEIFVESELPLSWADRLSGCLRGPWAWLVVLLAMLVEVALCTWYL 700
>gi|150417973 supervillin isoform 2 [Homo sapiens]
Length = 2214
Score = 28.1 bits (61), Expect = 7.7
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 155 GEGSGSVSLALHLQPLRSAAGAAALALTVDLPPASSEARNSAFGFQGRLLHLSAGQRLGV 214
G+GS + L+++ R +A DL PA+ +S F F GR + R
Sbjct: 190 GDGSSDPEVLLNIENQRRGQELSATRQAHDLSPAAES--SSTFSFSGRDSSFTEVPRSPK 247
Query: 215 HLHTEARARHAWQLTQGATVLGLFRVTPEIPAGLPSPRSE 254
H H+ + Q + G +++PE P+ E
Sbjct: 248 HAHSSS----LQQAASRSPSFGDPQLSPEARPSTGKPKHE 283
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,584,849
Number of Sequences: 37866
Number of extensions: 480814
Number of successful extensions: 1973
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1946
Number of HSP's gapped (non-prelim): 44
length of query: 254
length of database: 18,247,518
effective HSP length: 100
effective length of query: 154
effective length of database: 14,460,918
effective search space: 2226981372
effective search space used: 2226981372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.