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Search of human proteins with 4507243
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507243 somatostatin preproprotein [Homo sapiens]
(116 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507243 somatostatin preproprotein [Homo sapiens] 232 5e-62
gi|41327683 cortistatin preproprotein [Homo sapiens] 38 0.002
gi|38348374 apoptosis-inducing, TAF9-like domain 1 isoform C [Ho... 38 0.002
gi|37059814 ETAA16 protein [Homo sapiens] 32 0.11
gi|144922631 tigger transposable element derived 5 [Homo sapiens] 30 0.41
gi|194353966 dynein, axonemal, heavy polypeptide 6 [Homo sapiens] 29 0.70
gi|30794488 kinesin family member 27 [Homo sapiens] 29 0.70
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 28 1.2
gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... 28 1.2
gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... 28 1.2
gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... 28 1.2
gi|221316624 dystonin isoform 4 [Homo sapiens] 28 1.6
gi|221316622 dystonin isoform 3 [Homo sapiens] 28 1.6
gi|221316618 dystonin isoform 2 [Homo sapiens] 28 1.6
gi|34577047 dystonin isoform 1 [Homo sapiens] 28 1.6
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] 28 1.6
gi|46852172 kinesin family member 13B [Homo sapiens] 28 1.6
gi|27881484 zinc finger CCCH-type containing 7B [Homo sapiens] 28 2.0
gi|116174778 centrosome spindle pole associated protein 1 isofor... 28 2.0
gi|116174789 centrosome spindle pole associated protein 1 isofor... 28 2.0
gi|21389567 chemokine-like factor superfamily 2 [Homo sapiens] 28 2.0
gi|42740907 clusterin isoform 2 [Homo sapiens] 27 2.7
gi|42716297 clusterin isoform 1 [Homo sapiens] 27 2.7
gi|242247001 clathrin, heavy polypeptide-like 1 isoform 2 [Homo ... 27 3.5
gi|22758136 MAP7 domain containing 2 [Homo sapiens] 27 3.5
gi|12408649 X-ray repair cross complementing protein 4 isoform 1... 27 4.5
gi|4507945 X-ray repair cross complementing protein 4 isoform 1 ... 27 4.5
gi|12408647 X-ray repair cross complementing protein 4 isoform 2... 27 4.5
gi|24307909 ral guanine nucleotide dissociation stimulator isofo... 27 4.5
gi|108796058 ral guanine nucleotide dissociation stimulator isof... 27 4.5
>gi|4507243 somatostatin preproprotein [Homo sapiens]
Length = 116
Score = 232 bits (591), Expect = 5e-62
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MLSCRLQCALAALSIVLALGCVTGAPSDPRLRQFLQKSLAAAAGKQELAKYFLAELLSEP 60
MLSCRLQCALAALSIVLALGCVTGAPSDPRLRQFLQKSLAAAAGKQELAKYFLAELLSEP
Sbjct: 1 MLSCRLQCALAALSIVLALGCVTGAPSDPRLRQFLQKSLAAAAGKQELAKYFLAELLSEP 60
Query: 61 NQTENDALEPEDLSQAAEQDEMRLELQRSANSNPAMAPRERKAGCKNFFWKTFTSC 116
NQTENDALEPEDLSQAAEQDEMRLELQRSANSNPAMAPRERKAGCKNFFWKTFTSC
Sbjct: 61 NQTENDALEPEDLSQAAEQDEMRLELQRSANSNPAMAPRERKAGCKNFFWKTFTSC 116
>gi|41327683 cortistatin preproprotein [Homo sapiens]
Length = 155
Score = 38.1 bits (87), Expect = 0.002
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 80 DEMRLELQRSANSNPAMAPRERKAGCKNFFWKTFTSC 116
+E R +R + P + R + C+NFFWKTF+SC
Sbjct: 118 EEAREVARRQEGAPPQQSARRDRMPCRNFFWKTFSSC 154
>gi|38348374 apoptosis-inducing, TAF9-like domain 1 isoform C [Homo
sapiens]
Length = 164
Score = 38.1 bits (87), Expect = 0.002
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 80 DEMRLELQRSANSNPAMAPRERKAGCKNFFWKTFTSC 116
+E R +R + P + R + C+NFFWKTF+SC
Sbjct: 127 EEAREVARRQEGAPPQQSARRDRMPCRNFFWKTFSSC 163
>gi|37059814 ETAA16 protein [Homo sapiens]
Length = 926
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 21 CVTGAPSDPRLRQFLQKS------LAAAAGKQELAKYFLAELLSEPNQTE---NDALEPE 71
C+TG+ SD ++ Q ++K L A G+Q L K L+E L + ++ E N PE
Sbjct: 839 CITGSMSDTKITQGVEKKKGVNPLLEEAVGQQSLVK--LSESLKQSSKEEEEKNRKCSPE 896
Query: 72 DLSQAAEQDEMRLELQRSANS 92
++ + ++ +R + A+S
Sbjct: 897 EIQRKRQEALVRRMAKARASS 917
>gi|144922631 tigger transposable element derived 5 [Homo sapiens]
Length = 593
Score = 30.0 bits (66), Expect = 0.41
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 17 LALGCVTGAPSDPRLRQFLQKSLAAAAGKQ-------ELAKYFLAELLS--EPNQTENDA 67
LA+ C +G+P D +R F+ K + AG + + +L L + EP E+ A
Sbjct: 387 LAVSCASGSPLD-FMRSFMLKDMLYLAGLSWDLVQAGSIERCWLLGLRAAFEPRPGEDSA 445
Query: 68 LEPEDLSQAAEQDEMRLELQR-SANSNPAMAPRE 100
+P +AAE + +L +A + +AP E
Sbjct: 446 GQPAQAEEAAEHSRVLSDLTHLAALAYKCLAPEE 479
>gi|194353966 dynein, axonemal, heavy polypeptide 6 [Homo sapiens]
Length = 4158
Score = 29.3 bits (64), Expect = 0.70
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 53 LAELLSEPNQTENDALEPEDLSQAAEQDEMRLELQRSANSNPAMAPRERKAGCKNFFWKT 112
L EL +E N+ + A +P+ L +A+QD++RL L N +A +++A + K
Sbjct: 812 LEELNNEVNEVKLQAQDPQILDISADQDKIRLILN---NLQSVLADLQKRAFQYKSYQKN 868
Query: 113 F 113
F
Sbjct: 869 F 869
>gi|30794488 kinesin family member 27 [Homo sapiens]
Length = 1401
Score = 29.3 bits (64), Expect = 0.70
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 53 LAELLSEPNQTENDALEPEDLSQAAEQDEMRLELQRSANSNPAMAPRERK 102
L EL ++T+ LE EDL Q+ L LQ+ NS + ++K
Sbjct: 676 LVELSDTQDETQKSDLENEDLKIDCLQESQELNLQKLKNSERILTEAKQK 725
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 28.5 bits (62), Expect = 1.2
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 35 LQKSLAAA--AGKQ-ELAKYFLAELLSEPNQTENDALEPEDLSQAAEQDEMRLELQRSAN 91
LQ+ LAAA A KQ +L K LAE L+ N AL+ E A ++ EL+
Sbjct: 1692 LQEDLAAAERARKQADLEKEELAEELASSLSGRN-ALQDEKRRLEARIAQLEEELEEEQG 1750
Query: 92 SNPAMAPRERKA 103
+ AM+ R RKA
Sbjct: 1751 NMEAMSDRVRKA 1762
>gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo
sapiens]
Length = 1979
Score = 28.5 bits (62), Expect = 1.2
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 35 LQKSLAAA--AGKQ-ELAKYFLAELLSEPNQTENDALEPEDLSQAAEQDEMRLELQRSAN 91
LQ+ LAAA A KQ +L K LAE L+ N AL+ E A ++ EL+
Sbjct: 1699 LQEDLAAAERARKQADLEKEELAEELASSLSGRN-ALQDEKRRLEARIAQLEEELEEEQG 1757
Query: 92 SNPAMAPRERKA 103
+ AM+ R RKA
Sbjct: 1758 NMEAMSDRVRKA 1769
>gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo
sapiens]
Length = 1945
Score = 28.5 bits (62), Expect = 1.2
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 35 LQKSLAAA--AGKQ-ELAKYFLAELLSEPNQTENDALEPEDLSQAAEQDEMRLELQRSAN 91
LQ+ LAAA A KQ +L K LAE L+ N AL+ E A ++ EL+
Sbjct: 1699 LQEDLAAAERARKQADLEKEELAEELASSLSGRN-ALQDEKRRLEARIAQLEEELEEEQG 1757
Query: 92 SNPAMAPRERKA 103
+ AM+ R RKA
Sbjct: 1758 NMEAMSDRVRKA 1769
>gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo
sapiens]
Length = 1938
Score = 28.5 bits (62), Expect = 1.2
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 35 LQKSLAAA--AGKQ-ELAKYFLAELLSEPNQTENDALEPEDLSQAAEQDEMRLELQRSAN 91
LQ+ LAAA A KQ +L K LAE L+ N AL+ E A ++ EL+
Sbjct: 1692 LQEDLAAAERARKQADLEKEELAEELASSLSGRN-ALQDEKRRLEARIAQLEEELEEEQG 1750
Query: 92 SNPAMAPRERKA 103
+ AM+ R RKA
Sbjct: 1751 NMEAMSDRVRKA 1762
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 28.1 bits (61), Expect = 1.6
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 5 RLQCALAALSIVLALGCVTGAPSDPRLRQFLQKSLAAAAGKQELAKYFLAELLSEPN--- 61
+LQCA L I +LG + + Q QKSL A + +LAK +L+ E +
Sbjct: 3020 QLQCAKEQLDIHDSLGSQAYSNKYLTMLQTQQKSLQALKHQVDLAKRLAQDLVVEASDSK 3079
Query: 62 -------QTENDALEPEDLSQAAEQ 79
Q E A E LSQ ++
Sbjct: 3080 GTSDVLLQVETIAQEHSTLSQQVDE 3104
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 28.1 bits (61), Expect = 1.6
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 5 RLQCALAALSIVLALGCVTGAPSDPRLRQFLQKSLAAAAGKQELAKYFLAELLSEPN--- 61
+LQCA L I +LG + + Q QKSL A + +LAK +L+ E +
Sbjct: 3031 QLQCAKEQLDIHDSLGSQAYSNKYLTMLQTQQKSLQALKHQVDLAKRLAQDLVVEASDSK 3090
Query: 62 -------QTENDALEPEDLSQAAEQ 79
Q E A E LSQ ++
Sbjct: 3091 GTSDVLLQVETIAQEHSTLSQQVDE 3115
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 28.1 bits (61), Expect = 1.6
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 5 RLQCALAALSIVLALGCVTGAPSDPRLRQFLQKSLAAAAGKQELAKYFLAELLSEPN--- 61
+LQCA L I +LG + + Q QKSL A + +LAK +L+ E +
Sbjct: 3169 QLQCAKEQLDIHDSLGSQAYSNKYLTMLQTQQKSLQALKHQVDLAKRLAQDLVVEASDSK 3228
Query: 62 -------QTENDALEPEDLSQAAEQ 79
Q E A E LSQ ++
Sbjct: 3229 GTSDVLLQVETIAQEHSTLSQQVDE 3253
>gi|34577047 dystonin isoform 1 [Homo sapiens]
Length = 5497
Score = 28.1 bits (61), Expect = 1.6
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 5 RLQCALAALSIVLALGCVTGAPSDPRLRQFLQKSLAAAAGKQELAKYFLAELLSEPN--- 61
+LQCA L I +LG + + Q QKSL A + +LAK +L+ E +
Sbjct: 2991 QLQCAKEQLDIHDSLGSQAYSNKYLTMLQTQQKSLQALKHQVDLAKRLAQDLVVEASDSK 3050
Query: 62 -------QTENDALEPEDLSQAAEQ 79
Q E A E LSQ ++
Sbjct: 3051 GTSDVLLQVETIAQEHSTLSQQVDE 3075
>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
Length = 5171
Score = 28.1 bits (61), Expect = 1.6
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 5 RLQCALAALSIVLALGCVTGAPSDPRLRQFLQKSLAAAAGKQELAKYFLAELLSEPN--- 61
+LQCA L I +LG + + Q QKSL A + +LAK +L+ E +
Sbjct: 2665 QLQCAKEQLDIHDSLGSQAYSNKYLTMLQTQQKSLQALKHQVDLAKRLAQDLVVEASDSK 2724
Query: 62 -------QTENDALEPEDLSQAAEQ 79
Q E A E LSQ ++
Sbjct: 2725 GTSDVLLQVETIAQEHSTLSQQVDE 2749
>gi|46852172 kinesin family member 13B [Homo sapiens]
Length = 1826
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 28 DPRLRQFLQKSLAAAAGKQELAKYFLAELLSEPNQTENDALEPEDLSQAAEQDEMRLELQ 87
D L + +K L A +QE L +L+S+ ++TE+DA + A+ EMRL L
Sbjct: 1085 DRDLERLRRKWLNALTKRQEYLDQQLQKLVSKRDKTEDDA------DREAQLLEMRLTLT 1138
Query: 88 RSANS 92
N+
Sbjct: 1139 EERNA 1143
>gi|27881484 zinc finger CCCH-type containing 7B [Homo sapiens]
Length = 977
Score = 27.7 bits (60), Expect = 2.0
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 33 QFLQKSLAAAAGKQELAKYFLAELLSEPNQTENDALEPEDLSQAAEQDEMRLELQRSANS 92
QF+Q +L KQE + FL +L+ ND +D QA Q L + A S
Sbjct: 15 QFIQSTLPL---KQEEYEAFLLKLVQNLFAEGNDLFREKDYKQALVQYMEGLNVADYAAS 71
Query: 93 NPAMAPRE 100
+ PRE
Sbjct: 72 DQVALPRE 79
>gi|116174778 centrosome spindle pole associated protein 1 isoform b
[Homo sapiens]
Length = 1221
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 45 KQELAKYFLAELLSEPNQTENDALEPEDLSQAAEQDEMRLELQRSANSNPAMAPRERK 102
+QEL K FL + E Q E E E L A E++E RL QR+ +E+K
Sbjct: 731 QQELYKNFLRFQIEEKKQREE--AERERLRIAEEKEERRLAEQRARIQQEYEEEQEKK 786
>gi|116174789 centrosome spindle pole associated protein 1 isoform a
[Homo sapiens]
Length = 1256
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 45 KQELAKYFLAELLSEPNQTENDALEPEDLSQAAEQDEMRLELQRSANSNPAMAPRERK 102
+QEL K FL + E Q E E E L A E++E RL QR+ +E+K
Sbjct: 766 QQELYKNFLRFQIEEKKQREE--AERERLRIAEEKEERRLAEQRARIQQEYEEEQEKK 821
>gi|21389567 chemokine-like factor superfamily 2 [Homo sapiens]
Length = 248
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 58 SEPNQTENDALEPEDLSQAAEQDEMRLELQRSANSNPAMAPRER---KAGCKNFFWK 111
++P + + D EP D Q A QD + S A+ P+ + GC+ + W+
Sbjct: 22 AKPEEDKKDGKEPSDKPQKAVQDHK----EPSDKPQKAVQPKHEVGTRRGCRRYRWE 74
>gi|42740907 clusterin isoform 2 [Homo sapiens]
Length = 449
Score = 27.3 bits (59), Expect = 2.7
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 16 VLALGCVTGAPSDPRLRQFLQKSLAAA----AGKQELAKYF------LAELLSEPNQTEN 65
+L++ C T PS +LR+ L +SL A EL K + + LL + N+ N
Sbjct: 308 ILSVDCSTNNPSQAKLRRELDESLQVAERLTRKYNELLKSYQWKMLNTSSLLEQLNEQFN 367
Query: 66 DALEPEDLSQAAEQDEMRLELQRSANSN 93
+L+Q +Q +R+ S S+
Sbjct: 368 WVSRLANLTQGEDQYYLRVTTVASHTSD 395
>gi|42716297 clusterin isoform 1 [Homo sapiens]
Length = 501
Score = 27.3 bits (59), Expect = 2.7
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 16 VLALGCVTGAPSDPRLRQFLQKSLAAA----AGKQELAKYF------LAELLSEPNQTEN 65
+L++ C T PS +LR+ L +SL A EL K + + LL + N+ N
Sbjct: 360 ILSVDCSTNNPSQAKLRRELDESLQVAERLTRKYNELLKSYQWKMLNTSSLLEQLNEQFN 419
Query: 66 DALEPEDLSQAAEQDEMRLELQRSANSN 93
+L+Q +Q +R+ S S+
Sbjct: 420 WVSRLANLTQGEDQYYLRVTTVASHTSD 447
>gi|242247001 clathrin, heavy polypeptide-like 1 isoform 2 [Homo
sapiens]
Length = 1583
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 29 PRLRQFLQKSLAAAAGKQELAKYFLAELLSEPNQTENDALEPEDLSQAAEQDEMRLELQR 88
PRL S + AG+ L K +L + S N++ N+AL E+++ + +Q
Sbjct: 1428 PRLDHTWTVSFFSKAGQLPLVKPYLRSVQSHNNKSVNEALN----HLLTEEEDYQDAMQH 1483
Query: 89 SANSNPA 95
+A S A
Sbjct: 1484 AAESRDA 1490
>gi|22758136 MAP7 domain containing 2 [Homo sapiens]
Length = 732
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 64 ENDALEPEDLSQAAEQDEMRLELQRSANSNPAMAPRERK 102
E D LE E+L + AE++ +RLE + E K
Sbjct: 427 EQDRLEREELKRKAEEERLRLEEEARKQEEERKRQEEEK 465
>gi|12408649 X-ray repair cross complementing protein 4 isoform 1
[Homo sapiens]
Length = 334
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 53 LAELLSEPNQTENDALEPEDLSQAAEQDEMRLELQRSANSNPAMAPRERK 102
L+ L S ++ + D++ A + R +QR+ + P MAP+E +
Sbjct: 243 LSGLASAAVSKDDSIISSLDVTDIAPSRKRRQRMQRNLGTEPKMAPQENQ 292
>gi|4507945 X-ray repair cross complementing protein 4 isoform 1
[Homo sapiens]
Length = 334
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 53 LAELLSEPNQTENDALEPEDLSQAAEQDEMRLELQRSANSNPAMAPRERK 102
L+ L S ++ + D++ A + R +QR+ + P MAP+E +
Sbjct: 243 LSGLASAAVSKDDSIISSLDVTDIAPSRKRRQRMQRNLGTEPKMAPQENQ 292
>gi|12408647 X-ray repair cross complementing protein 4 isoform 2
[Homo sapiens]
Length = 336
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 53 LAELLSEPNQTENDALEPEDLSQAAEQDEMRLELQRSANSNPAMAPRERK 102
L+ L S ++ + D++ A + R +QR+ + P MAP+E +
Sbjct: 243 LSGLASAAVSKDDSIISSLDVTDIAPSRKRRQRMQRNLGTEPKMAPQENQ 292
>gi|24307909 ral guanine nucleotide dissociation stimulator isoform
1 [Homo sapiens]
Length = 914
Score = 26.6 bits (57), Expect = 4.5
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 26 PSDPRLRQFLQKSLAAAAGK--QELAKYFLAELL-SEPNQTENDALEPEDLSQAAEQDEM 82
P P L+Q + G + A LA+L SEP + E +AL P + + E+
Sbjct: 216 PDFPCLKQLVAYVQLNMPGSDLERRAHLLLAQLEHSEPIEAEPEALSPVPALKPTPELEL 275
Query: 83 RLELQRSANSNPAMAPRERKA 103
L R+ + PA AP A
Sbjct: 276 ALTPARAPSPVPAPAPEPEPA 296
>gi|108796058 ral guanine nucleotide dissociation stimulator isoform
2 [Homo sapiens]
Length = 859
Score = 26.6 bits (57), Expect = 4.5
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 26 PSDPRLRQFLQKSLAAAAGK--QELAKYFLAELL-SEPNQTENDALEPEDLSQAAEQDEM 82
P P L+Q + G + A LA+L SEP + E +AL P + + E+
Sbjct: 161 PDFPCLKQLVAYVQLNMPGSDLERRAHLLLAQLEHSEPIEAEPEALSPVPALKPTPELEL 220
Query: 83 RLELQRSANSNPAMAPRERKA 103
L R+ + PA AP A
Sbjct: 221 ALTPARAPSPVPAPAPEPEPA 241
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.128 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,229,753
Number of Sequences: 37866
Number of extensions: 152333
Number of successful extensions: 805
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 768
Number of HSP's gapped (non-prelim): 59
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.