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Search of human proteins with 4507123
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507123 small nuclear ribonucleoprotein polypeptide B''
[Homo sapiens]
(225 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38149981 small nuclear ribonucleoprotein polypeptide B'' [Hom... 455 e-128
gi|4507123 small nuclear ribonucleoprotein polypeptide B'' [Homo... 455 e-128
gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo s... 292 1e-79
gi|40538732 RNA-binding region (RNP1, RRM) containing 3 [Homo sa... 49 3e-06
gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Ho... 48 6e-06
gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Ho... 48 6e-06
gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Hom... 48 6e-06
gi|5730079 FUS interacting protein (serine-arginine rich) 1 isof... 47 2e-05
gi|169161980 PREDICTED: similar to FUS interacting protein (seri... 47 2e-05
gi|16905517 FUS interacting protein (serine-arginine rich) 1 iso... 47 2e-05
gi|38454188 RNA binding motif protein 41 [Homo sapiens] 47 2e-05
gi|28558998 polypyrimidine tract-binding protein 1 isoform d [Ho... 46 2e-05
gi|148612890 serine-arginine repressor protein [Homo sapiens] 46 2e-05
gi|10863997 polypyrimidine tract binding protein 2 [Homo sapiens] 46 2e-05
gi|7706326 splicing factor 3B, 14 kDa subunit [Homo sapiens] 45 7e-05
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens] 44 1e-04
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens] 44 1e-04
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens] 44 1e-04
gi|34303937 RNA binding motif protein, Y-linked, family 1, membe... 44 1e-04
gi|56090529 RNA binding motif protein, Y-linked, family 1, membe... 44 1e-04
gi|4826974 RNA binding motif protein, Y-linked, family 1, member... 44 1e-04
gi|56090527 RNA binding motif protein, Y-linked, family 1, membe... 44 1e-04
gi|54633344 RNA binding motif protein, Y-linked, family 1, membe... 44 1e-04
gi|56090533 RNA binding motif protein, Y-linked, family 1, membe... 44 1e-04
gi|169234630 RNA binding motif protein 11 [Homo sapiens] 43 2e-04
gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo ... 43 2e-04
gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens] 43 2e-04
gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens] 43 2e-04
gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens] 43 2e-04
gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens] 43 2e-04
>gi|38149981 small nuclear ribonucleoprotein polypeptide B'' [Homo
sapiens]
Length = 225
Score = 455 bits (1171), Expect = e-128
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELG 60
MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELG
Sbjct: 1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELG 60
Query: 61 SSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTT 120
SSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTT
Sbjct: 61 SSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTT 120
Query: 121 NKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEV 180
NKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEV
Sbjct: 121 NKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEV 180
Query: 181 RLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
RLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK
Sbjct: 181 RLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|4507123 small nuclear ribonucleoprotein polypeptide B'' [Homo
sapiens]
Length = 225
Score = 455 bits (1171), Expect = e-128
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELG 60
MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELG
Sbjct: 1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELG 60
Query: 61 SSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTT 120
SSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTT
Sbjct: 61 SSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTT 120
Query: 121 NKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEV 180
NKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEV
Sbjct: 121 NKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEV 180
Query: 181 RLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
RLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK
Sbjct: 181 RLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo
sapiens]
Length = 282
Score = 292 bits (748), Expect = 1e-79
Identities = 155/278 (55%), Positives = 189/278 (67%), Gaps = 54/278 (19%)
Query: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
+ RPNHTIYINN+N+KIKK+ELK+SLYA+FSQFG ++DI+ +++KMRGQAFVIFKE+ S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTN 121
+TNALR +QGFPFY KPMRIQYAKTDSDII+KM+GTF ++++K+EK+K K+ E AT
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKA 124
Query: 122 KKPGQGTPNSANTQGNSTPNP----------QVPDYPP---------------------- 149
+ G TP QG P +P PP
Sbjct: 125 VQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGA 184
Query: 150 ----------------------NYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRH 187
N+ILFL NLPEETNE+MLSMLFNQFPGFKEVRLVPGRH
Sbjct: 185 MPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244
Query: 188 DIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
DIAFVEF+N+ QAGAARDALQGFKIT ++AMKI++AKK
Sbjct: 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
Score = 33.1 bits (74), Expect = 0.20
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 144 VPDYPPNYILFLNNLPEETN----EMMLSMLFNQFPGFKEVRLVPG--RHDIAFVEFEND 197
VP+ PN+ +++NNL E+ + L +F+QF ++ + AFV F+
Sbjct: 3 VPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEV 62
Query: 198 GQAGAARDALQGFKITPSHAMKITYAK 224
A A ++QGF M+I YAK
Sbjct: 63 SSATNALRSMQGFPFY-DKPMRIQYAK 88
>gi|40538732 RNA-binding region (RNP1, RRM) containing 3 [Homo
sapiens]
Length = 517
Score = 49.3 bits (116), Expect = 3e-06
Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGH-----VVDIVALKTMKMRGQAFVIFKEL 59
PN IY+ N+ +++++LK ++ + F + DI +K +M+GQAF+
Sbjct: 418 PNCRIYVKNLAKHVQEKDLKY-IFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNE 476
Query: 60 GSSTNALRQLQGFPFYGKPMRIQYAKT 86
++ AL++ G+ +GKPM +Q+A++
Sbjct: 477 KAAAKALKEANGYVLFGKPMVVQFARS 503
>gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Homo
sapiens]
Length = 531
Score = 48.1 bits (113), Expect = 6e-06
Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 28/220 (12%)
Query: 6 NHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNA 65
N + ++N+N + +SL+ LF +G V + L K A V + + A
Sbjct: 336 NSVLLVSNLNPE---RVTPQSLFILFGVYGDVQRVKILFNKKEN--ALVQMADGNQAQLA 390
Query: 66 LRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTNKKPG 125
+ L G +GKP+RI +SK + +E ++++ K + KKPG
Sbjct: 391 MSHLNGHKLHGKPIRIT--------LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPG 442
Query: 126 QGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPG-FKEVRLVP 184
S N Q +PP+ L L+N+P +E L +LF+ G K +
Sbjct: 443 -----SKNFQNI---------FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 488
Query: 185 GRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAK 224
+A ++ + +A A L + +H ++++++K
Sbjct: 489 KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 528
>gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Homo
sapiens]
Length = 550
Score = 48.1 bits (113), Expect = 6e-06
Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 28/220 (12%)
Query: 6 NHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNA 65
N + ++N+N + +SL+ LF +G V + L K A V + + A
Sbjct: 355 NSVLLVSNLNPE---RVTPQSLFILFGVYGDVQRVKILFNKKEN--ALVQMADGNQAQLA 409
Query: 66 LRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTNKKPG 125
+ L G +GKP+RI +SK + +E ++++ K + KKPG
Sbjct: 410 MSHLNGHKLHGKPIRIT--------LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPG 461
Query: 126 QGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPG-FKEVRLVP 184
S N Q +PP+ L L+N+P +E L +LF+ G K +
Sbjct: 462 -----SKNFQNI---------FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 507
Query: 185 GRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAK 224
+A ++ + +A A L + +H ++++++K
Sbjct: 508 KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 547
>gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Homo
sapiens]
Length = 557
Score = 48.1 bits (113), Expect = 6e-06
Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 28/220 (12%)
Query: 6 NHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNA 65
N + ++N+N + +SL+ LF +G V + L K A V + + A
Sbjct: 362 NSVLLVSNLNPE---RVTPQSLFILFGVYGDVQRVKILFNKKEN--ALVQMADGNQAQLA 416
Query: 66 LRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTNKKPG 125
+ L G +GKP+RI +SK + +E ++++ K + KKPG
Sbjct: 417 MSHLNGHKLHGKPIRIT--------LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPG 468
Query: 126 QGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPG-FKEVRLVP 184
S N Q +PP+ L L+N+P +E L +LF+ G K +
Sbjct: 469 -----SKNFQNI---------FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 514
Query: 185 GRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAK 224
+A ++ + +A A L + +H ++++++K
Sbjct: 515 KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 554
>gi|5730079 FUS interacting protein (serine-arginine rich) 1
isoform 1 [Homo sapiens]
Length = 183
Score = 46.6 bits (109), Expect = 2e-05
Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVA---LKTMKMRGQAFVIFKELGS 61
PN ++++ N+ D + E+L+R F ++G +VD+ T + RG A+V F+++
Sbjct: 8 PNTSLFVRNVADDTRSEDLRRE----FGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRD 63
Query: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMR 95
+ +AL L G+ + IQ+A+ D ++M+
Sbjct: 64 AEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMK 97
>gi|169161980 PREDICTED: similar to FUS interacting protein
(serine-arginine rich) 1, partial [Homo sapiens]
Length = 181
Score = 46.6 bits (109), Expect = 2e-05
Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVA---LKTMKMRGQAFVIFKELGS 61
PN ++++ N+ D + E+L+R F ++G +VD+ T + RG A+V F+++
Sbjct: 8 PNTSLFVRNVADDTRSEDLRRE----FGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRD 63
Query: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMR 95
+ +AL L G+ + IQ+A+ D ++M+
Sbjct: 64 AEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMK 97
>gi|16905517 FUS interacting protein (serine-arginine rich) 1
isoform 2 [Homo sapiens]
Length = 262
Score = 46.6 bits (109), Expect = 2e-05
Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVA---LKTMKMRGQAFVIFKELGS 61
PN ++++ N+ D + E+L+R F ++G +VD+ T + RG A+V F+++
Sbjct: 8 PNTSLFVRNVADDTRSEDLRRE----FGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRD 63
Query: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMR 95
+ +AL L G+ + IQ+A+ D ++M+
Sbjct: 64 AEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMK 97
>gi|38454188 RNA binding motif protein 41 [Homo sapiens]
Length = 413
Score = 46.6 bits (109), Expect = 2e-05
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTN 64
PN +Y+ N++ ++ + +L SL+A F + + T +MRGQAF+ F +
Sbjct: 307 PNKVLYLKNLSPRVTERDLV-SLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQ 365
Query: 65 ALRQLQGFPFYGKPMRIQYAK 85
AL + G+ YGK + I++ K
Sbjct: 366 ALHLVNGYKLYGKILVIEFGK 386
Score = 32.3 bits (72), Expect = 0.34
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 149 PNYILFLNNLPEETNEMMLSMLFNQFPGFK----EVRLVPGR-HDIAFVEFENDGQAGAA 203
PN +L+L NL E L LF +F K + R++ GR AF+ F N A A
Sbjct: 307 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQA 366
Query: 204 RDALQGFKI 212
+ G+K+
Sbjct: 367 LHLVNGYKL 375
>gi|28558998 polypyrimidine tract-binding protein 1 isoform d [Homo
sapiens]
Length = 197
Score = 46.2 bits (108), Expect = 2e-05
Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 25/206 (12%)
Query: 20 KEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPM 79
K +SL+ LF +G V + L K A V + + A+ L G +GKP+
Sbjct: 13 KRVTPQSLFILFGVYGDVQRVKILFNKKEN--ALVQMADGNQAQLAMSHLNGHKLHGKPI 70
Query: 80 RIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTNKKPGQGTPNSANTQGNST 139
RI +SK + +E ++++ K + KKPG S N Q
Sbjct: 71 RIT--------LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPG-----SKNFQNI-- 115
Query: 140 PNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPG-FKEVRLVPGRHDIAFVEFENDG 198
+PP+ L L+N+P +E L +LF+ G K + +A ++ +
Sbjct: 116 -------FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVE 168
Query: 199 QAGAARDALQGFKITPSHAMKITYAK 224
+A A L + +H ++++++K
Sbjct: 169 EAVQALIDLHNHDLGENHHLRVSFSK 194
>gi|148612890 serine-arginine repressor protein [Homo sapiens]
Length = 261
Score = 46.2 bits (108), Expect = 2e-05
Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDI---VALKTMKMRGQAFVIFKELGS 61
PN +++I N+ D + E+L+R F ++G +VD+ + T + RG A+V F+++
Sbjct: 8 PNTSLFIRNVADATRPEDLRRE----FGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRD 63
Query: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTAT 118
+ +AL L G+ + IQ+A+ D +M+ + +++++ Q T
Sbjct: 64 AEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRT 120
>gi|10863997 polypyrimidine tract binding protein 2 [Homo sapiens]
Length = 531
Score = 46.2 bits (108), Expect = 2e-05
Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 27/219 (12%)
Query: 6 NHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNA 65
N + ++N+N+++ + SL+ LF +G V + L K A + + S A
Sbjct: 337 NTVLLVSNLNEEMVTPQ---SLFTLFGVYGDVQRVKILYNKK--DSALIQMADGNQSQLA 391
Query: 66 LRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTNKKPG 125
+ L G YGK +R+ +SK + +E ++ K + KKPG
Sbjct: 392 MNHLNGQKMYGKIIRVT--------LSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPG 443
Query: 126 QGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPG 185
S N Q +PP+ L L+N+P E L LF G +
Sbjct: 444 -----SKNFQNI---------FPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQ 489
Query: 186 RHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAK 224
H +A ++ +A A L + + +H ++++++K
Sbjct: 490 DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528
>gi|7706326 splicing factor 3B, 14 kDa subunit [Homo sapiens]
Length = 125
Score = 44.7 bits (104), Expect = 7e-05
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 6 NHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNA 65
N +YI N+ KI EE+ Y +F ++G + I T + RG A+V+++++ + NA
Sbjct: 18 NRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNA 73
Query: 66 LRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKK 109
L GF + + + Y + KM D +KK+E+ K
Sbjct: 74 CDHLSGFNVCNRYLVVLYYNANR-AFQKM-----DTKKKEEQLK 111
Score = 33.1 bits (74), Expect = 0.20
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 148 PP--NYILFLNNLPEETNEMMLSMLFNQFPGFKEVRL--VPGRHDIAFVEFENDGQAGAA 203
PP N IL++ NLP + + +F ++ +++R+ P A+V +E+ A A
Sbjct: 14 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNA 73
Query: 204 RDALQGFKITPSHAMKITY 222
D L GF + + + + Y
Sbjct: 74 CDHLSGFNVCNRYLVVLYY 92
>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
Length = 405
Score = 43.9 bits (102), Expect = 1e-04
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALK---TMKMRGQAFVIFKELGSSTNA 65
+Y+ +++ I ++ L+ +F FG + +IV +K T + +G F+ F + + A
Sbjct: 231 LYVGSLHFNITEDMLR----GIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRA 286
Query: 66 LRQLQGFPFYGKPMRI 81
L QL GF G+PMR+
Sbjct: 287 LEQLNGFELAGRPMRV 302
>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
Length = 439
Score = 43.9 bits (102), Expect = 1e-04
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALK---TMKMRGQAFVIFKELGSSTNA 65
+Y+ +++ I ++ L+ +F FG + +IV +K T + +G F+ F + + A
Sbjct: 265 LYVGSLHFNITEDMLR----GIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRA 320
Query: 66 LRQLQGFPFYGKPMRI 81
L QL GF G+PMR+
Sbjct: 321 LEQLNGFELAGRPMRV 336
>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
Length = 423
Score = 43.9 bits (102), Expect = 1e-04
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALK---TMKMRGQAFVIFKELGSSTNA 65
+Y+ +++ I ++ L+ +F FG + +IV +K T + +G F+ F + + A
Sbjct: 249 LYVGSLHFNITEDMLR----GIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRA 304
Query: 66 LRQLQGFPFYGKPMRI 81
L QL GF G+PMR+
Sbjct: 305 LEQLNGFELAGRPMRV 320
>gi|34303937 RNA binding motif protein, Y-linked, family 1, member
F [Homo sapiens]
Length = 496
Score = 43.9 bits (102), Expect = 1e-04
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 18 IKKEELKRSLYALFSQFGHVVDIVALK--TMKMRGQAFVIFKELGSSTNALRQLQGFPFY 75
+ +E ++ L A+F + G + +++ +K T K RG AF+ F+ + NA + + G +
Sbjct: 15 LNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGTSLH 74
Query: 76 GKPMRIQYAKTDS 88
GK ++++ AK S
Sbjct: 75 GKAIKVEQAKKPS 87
Score = 40.0 bits (92), Expect = 0.002
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 153 LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFENDGQAGAARDALQ 208
LF+ L ETNE ML +F + EV L+ R AF+ FEN A A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
Query: 209 GFKITPSHAMKITYAKK 225
G + A+K+ AKK
Sbjct: 70 GTSL-HGKAIKVEQAKK 85
>gi|56090529 RNA binding motif protein, Y-linked, family 1, member
J [Homo sapiens]
Length = 496
Score = 43.9 bits (102), Expect = 1e-04
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 18 IKKEELKRSLYALFSQFGHVVDIVALK--TMKMRGQAFVIFKELGSSTNALRQLQGFPFY 75
+ +E ++ L A+F + G + +++ +K T K RG AF+ F+ + NA + + G +
Sbjct: 15 LNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGTSLH 74
Query: 76 GKPMRIQYAKTDS 88
GK ++++ AK S
Sbjct: 75 GKAIKVEQAKKPS 87
Score = 40.0 bits (92), Expect = 0.002
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 153 LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFENDGQAGAARDALQ 208
LF+ L ETNE ML +F + EV L+ R AF+ FEN A A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
Query: 209 GFKITPSHAMKITYAKK 225
G + A+K+ AKK
Sbjct: 70 GTSL-HGKAIKVEQAKK 85
>gi|4826974 RNA binding motif protein, Y-linked, family 1, member
A1 [Homo sapiens]
Length = 496
Score = 43.5 bits (101), Expect = 1e-04
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 18 IKKEELKRSLYALFSQFGHVVDIVALK--TMKMRGQAFVIFKELGSSTNALRQLQGFPFY 75
+ +E ++ L A+F + G + +++ +K T K RG AF+ F+ + NA + + G +
Sbjct: 15 LNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH 74
Query: 76 GKPMRIQYAKTDS 88
GK ++++ AK S
Sbjct: 75 GKAIKVEQAKKPS 87
Score = 40.8 bits (94), Expect = 0.001
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 153 LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFENDGQAGAARDALQ 208
LF+ L ETNE ML +F + EV L+ R AF+ FEN A A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
Query: 209 GFKITPSHAMKITYAKK 225
G K A+K+ AKK
Sbjct: 70 G-KSLHGKAIKVEQAKK 85
>gi|56090527 RNA binding motif protein, Y-linked, family 1, member
E [Homo sapiens]
Length = 496
Score = 43.5 bits (101), Expect = 1e-04
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 18 IKKEELKRSLYALFSQFGHVVDIVALK--TMKMRGQAFVIFKELGSSTNALRQLQGFPFY 75
+ +E ++ L A+F + G + +++ +K T K RG AF+ F+ + NA + + G +
Sbjct: 15 LNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH 74
Query: 76 GKPMRIQYAKTDS 88
GK ++++ AK S
Sbjct: 75 GKAIKVEQAKKPS 87
Score = 40.8 bits (94), Expect = 0.001
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 153 LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFENDGQAGAARDALQ 208
LF+ L ETNE ML +F + EV L+ R AF+ FEN A A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
Query: 209 GFKITPSHAMKITYAKK 225
G K A+K+ AKK
Sbjct: 70 G-KSLHGKAIKVEQAKK 85
>gi|54633344 RNA binding motif protein, Y-linked, family 1, member
B [Homo sapiens]
Length = 496
Score = 43.5 bits (101), Expect = 1e-04
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 18 IKKEELKRSLYALFSQFGHVVDIVALK--TMKMRGQAFVIFKELGSSTNALRQLQGFPFY 75
+ +E ++ L A+F + G + +++ +K T K RG AF+ F+ + NA + + G +
Sbjct: 15 LNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH 74
Query: 76 GKPMRIQYAKTDS 88
GK ++++ AK S
Sbjct: 75 GKAIKVEQAKKPS 87
Score = 40.8 bits (94), Expect = 0.001
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 153 LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFENDGQAGAARDALQ 208
LF+ L ETNE ML +F + EV L+ R AF+ FEN A A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
Query: 209 GFKITPSHAMKITYAKK 225
G K A+K+ AKK
Sbjct: 70 G-KSLHGKAIKVEQAKK 85
>gi|56090533 RNA binding motif protein, Y-linked, family 1, member
D [Homo sapiens]
Length = 496
Score = 43.5 bits (101), Expect = 1e-04
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 18 IKKEELKRSLYALFSQFGHVVDIVALK--TMKMRGQAFVIFKELGSSTNALRQLQGFPFY 75
+ +E ++ L A+F + G + +++ +K T K RG AF+ F+ + NA + + G +
Sbjct: 15 LNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH 74
Query: 76 GKPMRIQYAKTDS 88
GK ++++ AK S
Sbjct: 75 GKAIKVEQAKKPS 87
Score = 40.8 bits (94), Expect = 0.001
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 153 LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFENDGQAGAARDALQ 208
LF+ L ETNE ML +F + EV L+ R AF+ FEN A A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
Query: 209 GFKITPSHAMKITYAKK 225
G K A+K+ AKK
Sbjct: 70 G-KSLHGKAIKVEQAKK 85
>gi|169234630 RNA binding motif protein 11 [Homo sapiens]
Length = 281
Score = 43.1 bits (100), Expect = 2e-04
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 6 NHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM--KMRGQAFVIFKELGSST 63
+ T+++ N+ ++++E LY LF Q G + + K K + FV FK S +
Sbjct: 9 DRTVFVGNLEARVREE----ILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVS 64
Query: 64 NALRQLQGFPFYGKPMRIQY 83
A+ L G YG+P+ +QY
Sbjct: 65 YAIALLNGIRLYGRPINVQY 84
>gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo
sapiens]
Length = 217
Score = 43.1 bits (100), Expect = 2e-04
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 8 TIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALK---TMKMRGQAFVIFKELGSSTN 64
T+Y++N+ + +L Y +FS++G VV + +K T K +G AF++F + S+ N
Sbjct: 11 TVYVSNLPFSLTNNDL----YRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQN 66
Query: 65 ALRQLQGFPFYGKPMRIQYA 84
R + +G+ ++ A
Sbjct: 67 CTRAINNKQLFGRVIKASIA 86
>gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
Length = 397
Score = 42.7 bits (99), Expect = 2e-04
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
Query: 102 EKKKEKKKAKTVEQTATTTNKK-PGQGTPN---SANTQGNSTPNPQVPDYPPNYILFLNN 157
E+ A+TV TAT T+ P G P S NT+ S P L ++N
Sbjct: 74 EQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKR----------LHVSN 123
Query: 158 LPEETNEMMLSMLFNQFPGFKEVRLV---PGRHDIAFVEFENDGQAGAARDALQG 209
+P + L +F QF +V ++ G FV FEN A AR+ L G
Sbjct: 124 IPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG 178
>gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens]
Length = 370
Score = 42.7 bits (99), Expect = 2e-04
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
Query: 102 EKKKEKKKAKTVEQTATTTNKK-PGQGTPN---SANTQGNSTPNPQVPDYPPNYILFLNN 157
E+ A+TV TAT T+ P G P S NT+ S P L ++N
Sbjct: 74 EQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKR----------LHVSN 123
Query: 158 LPEETNEMMLSMLFNQFPGFKEVRLV---PGRHDIAFVEFENDGQAGAARDALQG 209
+P + L +F QF +V ++ G FV FEN A AR+ L G
Sbjct: 124 IPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG 178
>gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens]
Length = 395
Score = 42.7 bits (99), Expect = 2e-04
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
Query: 102 EKKKEKKKAKTVEQTATTTNKK-PGQGTPN---SANTQGNSTPNPQVPDYPPNYILFLNN 157
E+ A+TV TAT T+ P G P S NT+ S P L ++N
Sbjct: 94 EQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKR----------LHVSN 143
Query: 158 LPEETNEMMLSMLFNQFPGFKEVRLV---PGRHDIAFVEFENDGQAGAARDALQG 209
+P + L +F QF +V ++ G FV FEN A AR+ L G
Sbjct: 144 IPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG 198
>gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens]
Length = 392
Score = 42.7 bits (99), Expect = 2e-04
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
Query: 102 EKKKEKKKAKTVEQTATTTNKK-PGQGTPN---SANTQGNSTPNPQVPDYPPNYILFLNN 157
E+ A+TV TAT T+ P G P S NT+ S P L ++N
Sbjct: 94 EQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKR----------LHVSN 143
Query: 158 LPEETNEMMLSMLFNQFPGFKEVRLV---PGRHDIAFVEFENDGQAGAARDALQG 209
+P + L +F QF +V ++ G FV FEN A AR+ L G
Sbjct: 144 IPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG 198
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,665,443
Number of Sequences: 37866
Number of extensions: 392220
Number of successful extensions: 2895
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 2526
Number of HSP's gapped (non-prelim): 470
length of query: 225
length of database: 18,247,518
effective HSP length: 99
effective length of query: 126
effective length of database: 14,498,784
effective search space: 1826846784
effective search space used: 1826846784
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.