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Search of human proteins with 4506901
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506901 splicing factor, arginine/serine-rich 3 [Homo
sapiens]
(164 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens] 343 4e-95
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] 162 2e-40
gi|16905517 FUS interacting protein (serine-arginine rich) 1 iso... 97 8e-21
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 96 1e-20
gi|148612890 serine-arginine repressor protein [Homo sapiens] 95 2e-20
gi|5730079 FUS interacting protein (serine-arginine rich) 1 isof... 93 9e-20
gi|169161980 PREDICTED: similar to FUS interacting protein (seri... 89 2e-18
gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens] 86 1e-17
gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens] 86 1e-17
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 85 3e-17
gi|118582269 splicing factor, arginine/serine-rich 1 isoform 2 [... 75 2e-14
gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Ho... 75 2e-14
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 73 1e-13
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 72 2e-13
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 72 2e-13
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 70 6e-13
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 70 6e-13
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 70 6e-13
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 70 6e-13
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 70 6e-13
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 70 6e-13
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] 70 8e-13
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 68 4e-12
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 68 4e-12
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 67 7e-12
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 67 9e-12
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 67 9e-12
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 67 9e-12
gi|4826974 RNA binding motif protein, Y-linked, family 1, member... 61 4e-10
gi|56090527 RNA binding motif protein, Y-linked, family 1, membe... 61 4e-10
>gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens]
Length = 164
Score = 343 bits (880), Expect = 4e-95
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 1 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAA 60
MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAA
Sbjct: 1 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAA 60
Query: 61 DAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRS 120
DAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRS
Sbjct: 61 DAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRS 120
Query: 121 FSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK 164
FSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK
Sbjct: 121 FSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK 164
>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
Length = 238
Score = 162 bits (409), Expect = 2e-40
Identities = 99/165 (60%), Positives = 107/165 (64%), Gaps = 14/165 (8%)
Query: 9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDG 68
+ KVYVGNLG K ELERAF YYGPLR+VW+ARNPPGFAFVEFEDPRDA DAVR LDG
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDG 69
Query: 69 RTLCGCRVRVELSNG-EKRSRNRGPPPSWGRRPRDDYRR---------RSPPPRRRSPRR 118
+ +CG RVRVELS G +RSR PP RRP D R + R S RR
Sbjct: 70 KVICGSRVRVELSTGMPRRSRFDRPP---ARRPFDPNDRCYECGEKGHYAYDCHRYSRRR 126
Query: 119 RSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNER 163
RS SRSRS S SR RR RS SR R + SRS S RSRS S R
Sbjct: 127 RSRSRSRSHSRSRGRRYSRSRSRSRGRR-SRSASPRRSRSISLRR 170
>gi|16905517 FUS interacting protein (serine-arginine rich) 1
isoform 2 [Homo sapiens]
Length = 262
Score = 96.7 bits (239), Expect = 8e-21
Identities = 63/184 (34%), Positives = 93/184 (50%), Gaps = 21/184 (11%)
Query: 1 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-----ARNPPGFAFVEFED 55
M R P + ++V N+ ++ +L R FG YGP+ V+V R P GFA+V+FED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 56 PRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPS----WGRRPRDDY----RRR 107
RDA DA+ LD + +CG ++ ++ + G++++ N+ + DDY R R
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR 120
Query: 108 SPPPRRRSPR--------RRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSR 159
S RR R RRS+S SR R RR +R +RSFSRS+S SR
Sbjct: 121 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSKSNSR 180
Query: 160 SNER 163
S +
Sbjct: 181 SRSK 184
Score = 28.9 bits (63), Expect = 2.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 97 GRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNH 145
G R + R++ PP R +S SRS+SRS S+ R R + + H
Sbjct: 220 GSRYEKESRKKEPP------RSKSQSRSQSRSRSKSRSRSWTSPKSSGH 262
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 95.9 bits (237), Expect = 1e-20
Identities = 72/171 (42%), Positives = 90/171 (52%), Gaps = 21/171 (12%)
Query: 14 VGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDG 68
V NL + L R F YG + V++ R+ GFAFV F D RDA DA+ +DG
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 69 RTLCGCRVRVELSN----GEKRSRNRGPPP------SWGRRPRDDYRRRSPPPRRRS-PR 117
L G +RV+++ + RGPPP +GRR R RRR R RS R
Sbjct: 78 AVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSR 137
Query: 118 RRSFSR-SRSRSLSRDRRRERSLSRERNHKPSRS----FSRSRSRSRSNER 163
RS SR SRS+S SR R R RS S+ R+ + S+S SRSRSRSRS R
Sbjct: 138 SRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSR 188
Score = 32.3 bits (72), Expect = 0.19
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 81 SNGEKRSRNRGPPPSWGR-RPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSL 139
S +RS+++ S R R R R RSPPP +R S SRSRS+S + E ++
Sbjct: 163 SRSARRSKSKSSSVSRSRSRSRSRSRSRSPPP---VSKRESKSRSRSKSPPKSPEEEGAV 219
Query: 140 S 140
S
Sbjct: 220 S 220
>gi|148612890 serine-arginine repressor protein [Homo sapiens]
Length = 261
Score = 95.1 bits (235), Expect = 2e-20
Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 16/165 (9%)
Query: 1 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-----ARNPPGFAFVEFED 55
M R + P + +++ N+ + +L R FG YGP+ V++ R P GFA+V+FED
Sbjct: 1 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED 60
Query: 56 PRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRP--RDDYRRRSPPPRR 113
RDA DA+ L+ + +CG ++ ++ + G++++ G S R P D+RR P +R
Sbjct: 61 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKT--PGQMKSKERHPCSPSDHRRSRSPSQR 118
Query: 114 RSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRS 158
R +RSRS S R+RRR SL R+ + S S S+SRS+S
Sbjct: 119 R-------TRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKS 156
>gi|5730079 FUS interacting protein (serine-arginine rich) 1 isoform
1 [Homo sapiens]
Length = 183
Score = 93.2 bits (230), Expect = 9e-20
Identities = 62/172 (36%), Positives = 91/172 (52%), Gaps = 17/172 (9%)
Query: 1 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-----ARNPPGFAFVEFED 55
M R P + ++V N+ ++ +L R FG YGP+ V+V R P GFA+V+FED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 56 PRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPS----WGRRPRDDYRRRSPPP 111
RDA DA+ LD + +CG ++ ++ + G++++ N+ + DDY
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDY------D 114
Query: 112 RRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNER 163
R R R RS+ R RSRS S D RS S RN +P+ RSRS S N+R
Sbjct: 115 RYRRSRSRSYERRRSRSRSFDYNYRRSYS-PRNSRPTGRPRRSRSHS-DNDR 164
>gi|169161980 PREDICTED: similar to FUS interacting protein
(serine-arginine rich) 1, partial [Homo sapiens]
Length = 181
Score = 89.0 bits (219), Expect = 2e-18
Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 18/172 (10%)
Query: 1 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-----ARNPPGFAFVEFED 55
M R P + ++V N+ ++ +L R FG YGP+ V+V R P GFA+V+FED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 56 PRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPS----WGRRPRDDYRRRSPPP 111
RDA DA+ LD + +CG ++ ++ + G++++ N+ + DDY
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDY------D 114
Query: 112 RRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNER 163
R R R RS+ R RSRS S D RS S ++P+ RSRS S N+R
Sbjct: 115 RYRRSRSRSYERRRSRSRSFDYNYRRSYS--PRNRPTGRPRRSRSHS-DNDR 163
>gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens]
Length = 272
Score = 86.3 bits (212), Expect = 1e-17
Identities = 70/212 (33%), Positives = 88/212 (41%), Gaps = 62/212 (29%)
Query: 10 CKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGR 69
C+V++G L + ++ER F YG +R + + R GF FVEFEDPRDA DAV ELDG+
Sbjct: 4 CRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGK 60
Query: 70 TLCGCRVRVELSNGEK---RSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPR--------- 117
LC RV +E + R R R RRPR+D RR+ PP R R
Sbjct: 61 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRND--RRNAPPVRTENRLIVENLSSR 118
Query: 118 -----RRSFSRSRSRSLSRDRRRER----------------------------------- 137
+ F R D R +
Sbjct: 119 VSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE 178
Query: 138 -----SLSRERNHKPSRSFSRSRSRSRSNERK 164
S SR R+ +RS SRSRSRSRS RK
Sbjct: 179 GSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRK 210
Score = 61.6 bits (148), Expect = 3e-10
Identities = 50/126 (39%), Positives = 66/126 (52%), Gaps = 21/126 (16%)
Query: 51 VEFEDPRDAADAVRELDGRTLCGCRVR-VELSNGEKRSRNRGPPPSWGRRPRDDYRRRSP 109
VEF D +A+ +L G+ + G +++ +E S RSR+R R R R RS
Sbjct: 149 VEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRS-----RTRSSSRSRS- 202
Query: 110 PPRRRSPRRRSFSRSRSRSLSRDRRRERSLSR-------ERNHKPSRSFS-----RSRSR 157
R RS R+S+SRSRSRS SR R + RS+SR ++ SRS S R RSR
Sbjct: 203 --RSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSR 260
Query: 158 SRSNER 163
SRS R
Sbjct: 261 SRSRSR 266
>gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens]
Length = 272
Score = 86.3 bits (212), Expect = 1e-17
Identities = 70/212 (33%), Positives = 88/212 (41%), Gaps = 62/212 (29%)
Query: 10 CKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGR 69
C+V++G L + ++ER F YG +R + + R GF FVEFEDPRDA DAV ELDG+
Sbjct: 4 CRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGK 60
Query: 70 TLCGCRVRVELSNGEK---RSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPR--------- 117
LC RV +E + R R R RRPR+D RR+ PP R R
Sbjct: 61 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRND--RRNAPPVRTENRLIVENLSSR 118
Query: 118 -----RRSFSRSRSRSLSRDRRRER----------------------------------- 137
+ F R D R +
Sbjct: 119 VSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE 178
Query: 138 -----SLSRERNHKPSRSFSRSRSRSRSNERK 164
S SR R+ +RS SRSRSRSRS RK
Sbjct: 179 GSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRK 210
Score = 61.6 bits (148), Expect = 3e-10
Identities = 50/126 (39%), Positives = 66/126 (52%), Gaps = 21/126 (16%)
Query: 51 VEFEDPRDAADAVRELDGRTLCGCRVR-VELSNGEKRSRNRGPPPSWGRRPRDDYRRRSP 109
VEF D +A+ +L G+ + G +++ +E S RSR+R R R R RS
Sbjct: 149 VEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRS-----RTRSSSRSRS- 202
Query: 110 PPRRRSPRRRSFSRSRSRSLSRDRRRERSLSR-------ERNHKPSRSFS-----RSRSR 157
R RS R+S+SRSRSRS SR R + RS+SR ++ SRS S R RSR
Sbjct: 203 --RSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSR 260
Query: 158 SRSNER 163
SRS R
Sbjct: 261 SRSRSR 266
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 84.7 bits (208), Expect = 3e-17
Identities = 72/175 (41%), Positives = 86/175 (49%), Gaps = 32/175 (18%)
Query: 14 VGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-----GFAFVEFEDPRDAADAVRELDG 68
V NL + L R F YG + V++ R P GFAFV F D RDA DA +DG
Sbjct: 18 VDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG 77
Query: 69 RTLCGCRVRVELS-----------NGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPR 117
L G +RV+++ GE R R+RG +GRR R Y RRS RSPR
Sbjct: 78 AELDGRELRVQVARYGRRDLPRSRQGEPRGRSRG--GGYGRRSR-SYGRRS-----RSPR 129
Query: 118 RRSFSRSRSRSLSRDRRRERSLSRERNHKP-SRS-FSRSR------SRSRSNERK 164
RR SRSR S SR R R R + P SRS +SRSR SRSR E +
Sbjct: 130 RRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESR 184
>gi|118582269 splicing factor, arginine/serine-rich 1 isoform 2
[Homo sapiens]
Length = 201
Score = 75.5 bits (184), Expect = 2e-14
Identities = 47/112 (41%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVA--RNPPGFAFVEFEDPRDAADAVREL 66
DC++YVGNL + ++E F YG +R + + R P FAFVEFEDPRDA DAV
Sbjct: 15 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGR 74
Query: 67 DGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRR 118
DG G R+RVE + + G G PR Y PP RRS R
Sbjct: 75 DGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRY----GPPSRRSENR 122
>gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Homo
sapiens]
Length = 248
Score = 75.5 bits (184), Expect = 2e-14
Identities = 47/112 (41%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVA--RNPPGFAFVEFEDPRDAADAVREL 66
DC++YVGNL + ++E F YG +R + + R P FAFVEFEDPRDA DAV
Sbjct: 15 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGR 74
Query: 67 DGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRR 118
DG G R+RVE + + G G PR Y PP RRS R
Sbjct: 75 DGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRY----GPPSRRSENR 122
Score = 45.8 bits (107), Expect = 2e-05
Identities = 27/50 (54%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Query: 116 PRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRS-----FSRSRSRSRS 160
PR S+ RSRSRS SR R R RS SR R++ P RS +S SRSRS
Sbjct: 197 PRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRYSPRHSRSRS 246
Score = 37.4 bits (85), Expect = 0.006
Identities = 50/153 (32%), Positives = 62/153 (40%), Gaps = 33/153 (21%)
Query: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
+V V L +G+ +L+ G + V R+ G VEF D AVR+LD
Sbjct: 122 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDN-- 177
Query: 71 LCGCRVRVELSNGEK---RSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSR 127
+ GE R + GP RSP R R RS SRSRSR
Sbjct: 178 -----TKFRSHEGETAYIRVKVDGP--------------RSPSYGRSRSRSRSRSRSRSR 218
Query: 128 SLSRDR----RRERSLSRERNHKPSRSFSRSRS 156
S SR R RR R R + P S SRSR+
Sbjct: 219 SNSRSRSYSPRRSRGSPR---YSPRHSRSRSRT 248
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 72.8 bits (177), Expect = 1e-13
Identities = 56/180 (31%), Positives = 80/180 (44%), Gaps = 28/180 (15%)
Query: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVREL 66
++V + + +++L R F YGP++ + + + P G+AF+E+E RD A +
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 67 DGRTLCGCRVRVELSNGEK----RSRNRGPPPSWGRRP----------RDDYRRR----- 107
DG+ + G RV V++ G R R G RR RDD R
Sbjct: 165 DGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPG 224
Query: 108 -SPPPRR---RSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNER 163
SP P R R R RSR R R+RRR RS R R + R RSR RS ++
Sbjct: 225 PSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDK 284
Score = 29.6 bits (65), Expect = 1.2
Identities = 20/67 (29%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 93 PPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFS 152
P G P DD PP P + R R+RRR RER R
Sbjct: 319 PSEAGDAPPDD-----GPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRD 373
Query: 153 RSRSRSR 159
R R R
Sbjct: 374 RDREHKR 380
Score = 28.5 bits (62), Expect = 2.7
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 91 GPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHK-PSR 149
GPP G D + R RRRS R R RDR R+ R+R HK R
Sbjct: 330 GPPGELGPDGPDGPEEKGRDRDRE--RRRSHRSERERRRDRDRDRD----RDREHKRGER 383
Query: 150 SFSRSRSRSR 159
R R +R
Sbjct: 384 GSERGRDEAR 393
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 72.4 bits (176), Expect = 2e-13
Identities = 56/154 (36%), Positives = 71/154 (46%), Gaps = 22/154 (14%)
Query: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVW--VARNPP----GFAFVEFEDP 56
R P KV++G L N K + F YG ++ + V R P G+A+VEFE+P
Sbjct: 154 RSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENP 213
Query: 57 RDAADAVRELDGRTLCGCRV----------RVELSNGEKRSRNRGPPPSWGRRPRDDYRR 106
+A A++ +DG + G + R R PPP W R P RR
Sbjct: 214 DEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPRRMLPPPPMWRRSP-PRMRR 272
Query: 107 RSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS 140
RS PRRRSP RR RSRS R R R RS S
Sbjct: 273 RSRSPRRRSPVRR-----RSRSPGRRRHRSRSSS 301
Score = 30.0 bits (66), Expect = 0.94
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 107 RSPPPRRRSPRRRSFSRSRSR-------SLSRDRRRERSLSRERNHKPSRSFSRSRSRSR 159
R+P P +R R S+ RS+ S +DR R+++ R R+ S +RSRS S
Sbjct: 24 RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKR-RSASSGSSSTRSRSSST 82
Query: 160 SN 161
S+
Sbjct: 83 SS 84
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 72.4 bits (176), Expect = 2e-13
Identities = 56/154 (36%), Positives = 71/154 (46%), Gaps = 22/154 (14%)
Query: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVW--VARNPP----GFAFVEFEDP 56
R P KV++G L N K + F YG ++ + V R P G+A+VEFE+P
Sbjct: 154 RSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENP 213
Query: 57 RDAADAVRELDGRTLCGCRV----------RVELSNGEKRSRNRGPPPSWGRRPRDDYRR 106
+A A++ +DG + G + R R PPP W R P RR
Sbjct: 214 DEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPRRMLPPPPMWRRSP-PRMRR 272
Query: 107 RSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS 140
RS PRRRSP RR RSRS R R R RS S
Sbjct: 273 RSRSPRRRSPVRR-----RSRSPGRRRHRSRSSS 301
Score = 30.0 bits (66), Expect = 0.94
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 107 RSPPPRRRSPRRRSFSRSRSR-------SLSRDRRRERSLSRERNHKPSRSFSRSRSRSR 159
R+P P +R R S+ RS+ S +DR R+++ R R+ S +RSRS S
Sbjct: 24 RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKR-RSASSGSSSTRSRSSST 82
Query: 160 SN 161
S+
Sbjct: 83 SS 84
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 70.5 bits (171), Expect = 6e-13
Identities = 57/154 (37%), Positives = 74/154 (48%), Gaps = 22/154 (14%)
Query: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVW--VARNPP----GFAFVEFEDP 56
R P KV++G L N K + F YG ++ + V R P G+A VEFE+P
Sbjct: 154 RSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENP 213
Query: 57 RDAADAVRELDGRTLCGCRVR--VELSNGEKRSRNR--------GPPPSWGRRPRDDYRR 106
+A A++ +DG + G + V L+ + + R PPP W R P RR
Sbjct: 214 DEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSP-PRMRR 272
Query: 107 RSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS 140
RS PRRRSP RR RSRS R R R RS S
Sbjct: 273 RSRSPRRRSPVRR-----RSRSPGRRRHRSRSSS 301
Score = 30.0 bits (66), Expect = 0.94
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 107 RSPPPRRRSPRRRSFSRSRSR-------SLSRDRRRERSLSRERNHKPSRSFSRSRSRSR 159
R+P P +R R S+ RS+ S +DR R+++ R R+ S +RSRS S
Sbjct: 24 RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKR-RSASSGSSSTRSRSSST 82
Query: 160 SN 161
S+
Sbjct: 83 SS 84
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 70.5 bits (171), Expect = 6e-13
Identities = 57/154 (37%), Positives = 74/154 (48%), Gaps = 22/154 (14%)
Query: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVW--VARNPP----GFAFVEFEDP 56
R P KV++G L N K + F YG ++ + V R P G+A VEFE+P
Sbjct: 154 RSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENP 213
Query: 57 RDAADAVRELDGRTLCGCRVR--VELSNGEKRSRNR--------GPPPSWGRRPRDDYRR 106
+A A++ +DG + G + V L+ + + R PPP W R P RR
Sbjct: 214 DEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSP-PRMRR 272
Query: 107 RSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS 140
RS PRRRSP RR RSRS R R R RS S
Sbjct: 273 RSRSPRRRSPVRR-----RSRSPGRRRHRSRSSS 301
Score = 30.0 bits (66), Expect = 0.94
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 107 RSPPPRRRSPRRRSFSRSRSR-------SLSRDRRRERSLSRERNHKPSRSFSRSRSRSR 159
R+P P +R R S+ RS+ S +DR R+++ R R+ S +RSRS S
Sbjct: 24 RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKR-RSASSGSSSTRSRSSST 82
Query: 160 SN 161
S+
Sbjct: 83 SS 84
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 70.5 bits (171), Expect = 6e-13
Identities = 57/154 (37%), Positives = 74/154 (48%), Gaps = 22/154 (14%)
Query: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVW--VARNPP----GFAFVEFEDP 56
R P KV++G L N K + F YG ++ + V R P G+A VEFE+P
Sbjct: 154 RSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENP 213
Query: 57 RDAADAVRELDGRTLCGCRVR--VELSNGEKRSRNR--------GPPPSWGRRPRDDYRR 106
+A A++ +DG + G + V L+ + + R PPP W R P RR
Sbjct: 214 DEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSP-PRMRR 272
Query: 107 RSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS 140
RS PRRRSP RR RSRS R R R RS S
Sbjct: 273 RSRSPRRRSPVRR-----RSRSPGRRRHRSRSSS 301
Score = 27.3 bits (59), Expect = 6.1
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 107 RSPPPRRRSPRRRSFSRSRSRSL-----SRDRRRERSLSRERNHKPSRSFSRSRSRSRSN 161
R+P P +R R S+ RS+ S ++ R R +R+R+ S S S +RSRS+
Sbjct: 24 RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH---SASSGSSSTRSRSS 80
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 70.5 bits (171), Expect = 6e-13
Identities = 57/154 (37%), Positives = 74/154 (48%), Gaps = 22/154 (14%)
Query: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVW--VARNPP----GFAFVEFEDP 56
R P KV++G L N K + F YG ++ + V R P G+A VEFE+P
Sbjct: 154 RSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENP 213
Query: 57 RDAADAVRELDGRTLCGCRVR--VELSNGEKRSRNR--------GPPPSWGRRPRDDYRR 106
+A A++ +DG + G + V L+ + + R PPP W R P RR
Sbjct: 214 DEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSP-PRMRR 272
Query: 107 RSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS 140
RS PRRRSP RR RSRS R R R RS S
Sbjct: 273 RSRSPRRRSPVRR-----RSRSPGRRRHRSRSSS 301
Score = 27.3 bits (59), Expect = 6.1
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 107 RSPPPRRRSPRRRSFSRSRSRSL-----SRDRRRERSLSRERNHKPSRSFSRSRSRSRSN 161
R+P P +R R S+ RS+ S ++ R R +R+R+ S S S +RSRS+
Sbjct: 24 RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH---SASSGSSSTRSRSS 80
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 70.5 bits (171), Expect = 6e-13
Identities = 57/154 (37%), Positives = 74/154 (48%), Gaps = 22/154 (14%)
Query: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVW--VARNPP----GFAFVEFEDP 56
R P KV++G L N K + F YG ++ + V R P G+A VEFE+P
Sbjct: 154 RSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENP 213
Query: 57 RDAADAVRELDGRTLCGCRVR--VELSNGEKRSRNR--------GPPPSWGRRPRDDYRR 106
+A A++ +DG + G + V L+ + + R PPP W R P RR
Sbjct: 214 DEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSP-PRMRR 272
Query: 107 RSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS 140
RS PRRRSP RR RSRS R R R RS S
Sbjct: 273 RSRSPRRRSPVRR-----RSRSPGRRRHRSRSSS 301
Score = 27.3 bits (59), Expect = 6.1
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 107 RSPPPRRRSPRRRSFSRSRSRSL-----SRDRRRERSLSRERNHKPSRSFSRSRSRSRSN 161
R+P P +R R S+ RS+ S ++ R R +R+R+ S S S +RSRS+
Sbjct: 24 RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH---SASSGSSSTRSRSS 80
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 70.5 bits (171), Expect = 6e-13
Identities = 57/154 (37%), Positives = 74/154 (48%), Gaps = 22/154 (14%)
Query: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVW--VARNPP----GFAFVEFEDP 56
R P KV++G L N K + F YG ++ + V R P G+A VEFE+P
Sbjct: 154 RSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENP 213
Query: 57 RDAADAVRELDGRTLCGCRVR--VELSNGEKRSRNR--------GPPPSWGRRPRDDYRR 106
+A A++ +DG + G + V L+ + + R PPP W R P RR
Sbjct: 214 DEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSP-PRMRR 272
Query: 107 RSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS 140
RS PRRRSP RR RSRS R R R RS S
Sbjct: 273 RSRSPRRRSPVRR-----RSRSPGRRRHRSRSSS 301
Score = 27.3 bits (59), Expect = 6.1
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 107 RSPPPRRRSPRRRSFSRSRSRSL-----SRDRRRERSLSRERNHKPSRSFSRSRSRSRSN 161
R+P P +R R S+ RS+ S ++ R R +R+R+ S S S +RSRS+
Sbjct: 24 RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH---SASSGSSSTRSRSS 80
>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
Length = 344
Score = 70.1 bits (170), Expect = 8e-13
Identities = 65/214 (30%), Positives = 86/214 (40%), Gaps = 66/214 (30%)
Query: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
+VY+G L N + +++R F YG L V + G+ FVEFED RDA DAV EL+G+
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKN---GYGFVEFEDSRDADDAVYELNGKE 59
Query: 71 LCGCRVRVELSNGEKRSRNRGPPPSWGRRP--------RDDYRRRSPPPRRRSPR----- 117
LCG RV VE + G +R R+ S+G R R R + PP R R
Sbjct: 60 LCGERVIVEHARGPRRDRD---GYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVEN 116
Query: 118 ---------RRSFSRSRSRSLSRDRRRERS------------------------------ 138
+ F R D +ER+
Sbjct: 117 LSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
Query: 139 --------LSRERNHKPSRSFSRSRSRSRSNERK 164
S R++ SRS SRSR RSRS R+
Sbjct: 177 RLIEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRR 210
Score = 55.1 bits (131), Expect = 3e-08
Identities = 48/136 (35%), Positives = 63/136 (46%), Gaps = 26/136 (19%)
Query: 51 VEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPP 110
+EF D A+ +LDG + G +R+ + + + S R G R R RRRS
Sbjct: 151 IEFRSYSDMKRALDKLDGTEINGRNIRL-IEDKPRTSHRRSYS---GSRSRSRSRRRSRS 206
Query: 111 PRRRSPRRRSFSRSRSRSLSRDRRRERSLSRER-------------------NHKPSRS- 150
RRS R RS S S+SRS SR R + RS SR + +H SRS
Sbjct: 207 RSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRSKSKSKPKSDRGSHSHSRSRSK 266
Query: 151 --FSRSRSRSRSNERK 164
+ +SRSRSRS K
Sbjct: 267 DEYEKSRSRSRSRSPK 282
Score = 43.1 bits (100), Expect = 1e-04
Identities = 33/90 (36%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 85 KRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSF----SRSRSRSLSRDRR------ 134
K +RG R +D+Y + R RSP+ S+SRSRS SR
Sbjct: 250 KPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKSKSRSRSQSRSNSPLPVPP 309
Query: 135 -RERSLSRERNHKPSRSFSRSRSRSRSNER 163
+ RS+S SRS SRSRS+SRS R
Sbjct: 310 SKARSVSPPPKRATSRSRSRSRSKSRSRSR 339
Score = 40.8 bits (94), Expect = 5e-04
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 75 RVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRS----------PPPRRRS---PRRRSF 121
R + E RSR+R P + + R RS PP + RS P +R+
Sbjct: 264 RSKDEYEKSRSRSRSRSPKENGKGDIKSKSRSRSQSRSNSPLPVPPSKARSVSPPPKRAT 323
Query: 122 SRSRSRSLSRDRRRERSLSRE 142
SRSRSRS S+ R R RS SR+
Sbjct: 324 SRSRSRSRSKSRSRSRSSSRD 344
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 67.8 bits (164), Expect = 4e-12
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 19/113 (16%)
Query: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-----GFAFVEFEDPRDAADAVRE 65
K+++G L N+ LE FG YG + V + ++ GFAFV FE P DA DA R+
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 66 LDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRR 118
++G++L G ++VE + R R PP PPPR R P R
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFERGRHGPP--------------PPPRSRGPPR 107
Score = 35.4 bits (80), Expect = 0.022
Identities = 36/85 (42%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 81 SNGEKRSR--NRGPPPSWGRRPR-DDYRRRSPPPRRRSPRRRSFSRSRS---RSLSRDRR 134
S G RS RGPPPS+G R DDY S R S+S SRS S R R
Sbjct: 287 SYGNSRSAPLTRGPPPSYGGSSRYDDY---SSSRDGYGGSRDSYSSSRSDLYSSCDRVGR 343
Query: 135 RERSL--SRERNHKPSRSFSRSRSR 157
+ER L S ER + SR S SR
Sbjct: 344 QERGLPPSVERGYPSSRDSYSSSSR 368
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 67.8 bits (164), Expect = 4e-12
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 19/113 (16%)
Query: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-----GFAFVEFEDPRDAADAVRE 65
K+++G L N+ LE FG YG + V + ++ GFAFV FE P DA DA R+
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 66 LDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRR 118
++G++L G ++VE + R R PP PPPR R P R
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFERGRHGPP--------------PPPRSRGPPR 107
Score = 35.4 bits (80), Expect = 0.022
Identities = 36/85 (42%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 81 SNGEKRSR--NRGPPPSWGRRPR-DDYRRRSPPPRRRSPRRRSFSRSRS---RSLSRDRR 134
S G RS RGPPPS+G R DDY S R S+S SRS S R R
Sbjct: 287 SYGNSRSAPLTRGPPPSYGGSSRYDDY---SSSRDGYGGSRDSYSSSRSDLYSSCDRVGR 343
Query: 135 RERSL--SRERNHKPSRSFSRSRSR 157
+ER L S ER + SR S SR
Sbjct: 344 QERGLPPSVERGYPSSRDSYSSSSR 368
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 67.0 bits (162), Expect = 7e-12
Identities = 43/105 (40%), Positives = 58/105 (55%), Gaps = 9/105 (8%)
Query: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
+VY+G L + ++ER F YG + V + G+ FVEF+D RDA DAV EL+G+
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKN---GYGFVEFDDLRDADDAVYELNGKD 59
Query: 71 LCGCRVRVELSNGEKRSRNRGPPPS---WGRRPRDDYRRRSPPPR 112
LCG RV VE + G +R + G S + R RD Y PP R
Sbjct: 60 LCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKY---GPPTR 101
Score = 52.8 bits (125), Expect = 1e-07
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 81 SNGEKRSRNRGPPPSWGR-RPRDDYRRRSPPPRRRSP-----RRRSFSRSRSRSLSRDRR 134
S+ + RSR+R S + R R R RS + RSP R RS S +SRS S+D+
Sbjct: 214 SHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQA 273
Query: 135 RER-----SLSRERNHKPSRSFSRSRSRSRSNERK 164
E+ ++ + ++ PSR S+S+SRSRS ER+
Sbjct: 274 EEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERR 308
Score = 52.4 bits (124), Expect = 2e-07
Identities = 44/115 (38%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 51 VEFEDPRDAADAVRELDGRTLCGCRVR-VELSNGEKRSRNRGPPPSWGRRPRDDYRRRSP 109
+EF D A+ +LDG + G ++R VE G +R R+ R R R RS
Sbjct: 145 IEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPGSRRRRSYS-------RSRSHSRSRSR 197
Query: 110 PPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK 164
R R RS S S S SR R R S SR S+S SRS+SRSRS + K
Sbjct: 198 SRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSR------SKSRSRSQSRSRSKKEK 246
Score = 47.8 bits (112), Expect = 4e-06
Identities = 30/72 (41%), Positives = 37/72 (51%)
Query: 87 SRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHK 146
S+ G S + R RS + P S SRSRS+S S+ R R +S SR +
Sbjct: 423 SQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRS 482
Query: 147 PSRSFSRSRSRS 158
PSRS SRS SRS
Sbjct: 483 PSRSRSRSHSRS 494
Score = 44.3 bits (103), Expect = 5e-05
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 13/66 (19%)
Query: 111 PRRRSP-RRRSFSRSRSRS------------LSRDRRRERSLSRERNHKPSRSFSRSRSR 157
P+ RSP R +S S+SRSRS +SR R +E+SL + R+ S+ SRSRSR
Sbjct: 286 PKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSR 345
Query: 158 SRSNER 163
SRS +
Sbjct: 346 SRSKSK 351
Score = 44.3 bits (103), Expect = 5e-05
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 81 SNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPR---RRSFSRSRSRSLSRDRRRER 137
S R +++ S + R + +R R RS R+S SRSRS+ SR R R R
Sbjct: 288 SRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSR 347
Query: 138 SLS------RERNHKPSRSFSRSRSRSRSNERK 164
S S R+R+ + SRS SRSRS+S + ++
Sbjct: 348 SKSKDKRKGRKRSREESRSRSRSRSKSERSRKR 380
Score = 44.3 bits (103), Expect = 5e-05
Identities = 34/95 (35%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 80 LSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRER-- 137
L RSR++G G R R R +S R+ R R SRSRSRS S+ R +
Sbjct: 327 LRQSRSRSRSKG-----GSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRG 381
Query: 138 --------SLSRERNHKPSRSFSRSRSRSRSNERK 164
S +++ RS SRS SRS S ER+
Sbjct: 382 SKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKERE 416
Score = 43.9 bits (102), Expect = 6e-05
Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 81 SNGEKRSRNRGPPPSWGRRPRDDYRR-----RSPPPRRRSPRRRSFS------RSRSRSL 129
S +S+++ S RR ++ R RS R R RS S RSRSRS
Sbjct: 290 SPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSK 349
Query: 130 SRDRRRERSLSRERNHKPSRSFSRS-RSRSRSNER 163
S+D+R+ R SRE + SRS S+S RSR R ++R
Sbjct: 350 SKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKR 384
Score = 40.8 bits (94), Expect = 5e-04
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 81 SNGEKRSRNRGPPPSWGRRPRD---DYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRER 137
S E RSR+R S R R D + S +++ RS SRS SRS+S++R +
Sbjct: 360 SREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAK 419
Query: 138 SLSRER----------NHKPSRSFSRSRSRSRSN 161
S S +R ++ +RS SRS S+S+ N
Sbjct: 420 SESSQREGRGESENAGTNQETRSRSRSNSKSKPN 453
Score = 38.9 bits (89), Expect = 0.002
Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 81 SNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS 140
S + R S R R + RS R RS S+S+ S R R +S S
Sbjct: 408 SRSVSKEREHAKSESSQREGRGESENAGTNQETRS-RSRSNSKSKPNLPSESRSRSKSAS 466
Query: 141 RERNHKPSRSFSRSRSRSRSNER 163
+ R+ SRS S SRS SRS R
Sbjct: 467 KTRSRSKSRSRSASRSPSRSRSR 489
>gi|239752336 PREDICTED: similar to RNA binding motif protein,
X-linked [Homo sapiens]
Length = 138
Score = 66.6 bits (161), Expect = 9e-12
Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 21/114 (18%)
Query: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRE 65
K ++G L NK LE FG YG + V + ++ GFAF+ FE P DA DA R+
Sbjct: 9 KFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARD 68
Query: 66 LDGRTLCGCRVRVELSNGEK-RSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRR 118
++G++L G ++VE + S RGPP PPPR R P R
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPP---------------PPPRSRGPPR 107
>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
Length = 138
Score = 66.6 bits (161), Expect = 9e-12
Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 21/114 (18%)
Query: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRE 65
K ++G L NK LE FG YG + V + ++ GFAF+ FE P DA DA R+
Sbjct: 9 KFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARD 68
Query: 66 LDGRTLCGCRVRVELSNGEK-RSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRR 118
++G++L G ++VE + S RGPP PPPR R P R
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPP---------------PPPRSRGPPR 107
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 66.6 bits (161), Expect = 9e-12
Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 21/114 (18%)
Query: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-----GFAFVEFEDPRDAADAVRE 65
K+++G L N+ LE FG YG + V + ++ GFAFV FE P DA DA R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 66 LDGRTLCGCRVRVELSNGEK-RSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRR 118
++G++L G ++VE + S RGPP PPPR R P R
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPP---------------PPPRSRGPPR 107
Score = 38.1 bits (87), Expect = 0.003
Identities = 35/83 (42%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 81 SNGEKRSR--NRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDR--RRE 136
S G RS RGPPPS+G R D S S S SRS S RDR R+E
Sbjct: 287 SYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQE 346
Query: 137 RSL--SRERNHKPSRSFSRSRSR 157
R L S ER + P R S SR
Sbjct: 347 RGLPPSMERGYPPPRDSYSSSSR 369
>gi|4826974 RNA binding motif protein, Y-linked, family 1, member A1
[Homo sapiens]
Length = 496
Score = 61.2 bits (147), Expect = 4e-10
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP----GFAFVEFEDPRDAADAVREL 66
K+++G L N+ L+ FG +GP+ V + ++ GFAF+ FE+P DA +A +++
Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDM 68
Query: 67 DGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPR 117
+G++L G ++VE +K S G RRP R RSP RS R
Sbjct: 69 NGKSLHGKAIKVE--QAKKPSFQSG----GRRRPPASSRNRSPSGSLRSAR 113
>gi|56090527 RNA binding motif protein, Y-linked, family 1, member E
[Homo sapiens]
Length = 496
Score = 61.2 bits (147), Expect = 4e-10
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP----GFAFVEFEDPRDAADAVREL 66
K+++G L N+ L+ FG +GP+ V + ++ GFAF+ FE+P DA +A +++
Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDM 68
Query: 67 DGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPR 117
+G++L G ++VE +K S G RRP R RSP RS R
Sbjct: 69 NGKSLHGKAIKVE--QAKKPSFQSG----GRRRPPASSRNRSPSGSLRSAR 113
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,835,580
Number of Sequences: 37866
Number of extensions: 403860
Number of successful extensions: 8078
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 214
Number of HSP's that attempted gapping in prelim test: 2550
Number of HSP's gapped (non-prelim): 2543
length of query: 164
length of database: 18,247,518
effective HSP length: 94
effective length of query: 70
effective length of database: 14,688,114
effective search space: 1028167980
effective search space used: 1028167980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.