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Search of human proteins with 4506541
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506541 retinaldehyde binding protein 1 [Homo sapiens]
(317 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506541 retinaldehyde binding protein 1 [Homo sapiens] 636 0.0
gi|27734849 retinaldehyde binding protein 1-like 1 [Homo sapiens] 205 4e-53
gi|71896667 retinaldehyde binding protein 1-like 2 [Homo sapiens] 201 9e-52
gi|85861243 tocopherol (alpha) transfer protein-like [Homo sapiens] 171 8e-43
gi|85861250 tocopherol (alpha) transfer protein-like [Homo sapiens] 171 8e-43
gi|4507723 tocopherol (alpha) transfer protein [Homo sapiens] 133 2e-31
gi|4506301 protein tyrosine phosphatase, non-receptor type 9 [Ho... 80 3e-15
gi|27923592 SEC14-like 3 [Homo sapiens] 63 3e-10
gi|169216042 PREDICTED: similar to SEC14p-like protein TAP3 [Hom... 59 4e-09
gi|209364516 SEC14-like 2 isoform 2 [Homo sapiens] 59 4e-09
gi|7110715 SEC14-like 2 isoform 1 [Homo sapiens] 59 4e-09
gi|169215836 PREDICTED: similar to SEC14p-like protein TAP3 [Hom... 58 1e-08
gi|169215635 PREDICTED: similar to SEC14p-like protein TAP3 [Hom... 58 1e-08
gi|238624167 SEC14p-like protein TAP3 isoform b [Homo sapiens] 57 2e-08
gi|28376621 SEC14p-like protein TAP3 isoform a [Homo sapiens] 57 2e-08
gi|150010661 SEC14-like 5 [Homo sapiens] 53 4e-07
gi|221316687 SEC14 (S. cerevisiae)-like 1 isoform c [Homo sapiens] 50 2e-06
gi|221316680 SEC14 (S. cerevisiae)-like 1 isoform a [Homo sapiens] 50 2e-06
gi|221316676 SEC14 (S. cerevisiae)-like 1 isoform a [Homo sapiens] 50 2e-06
gi|221316684 SEC14 (S. cerevisiae)-like 1 isoform b [Homo sapiens] 50 2e-06
gi|221316682 SEC14 (S. cerevisiae)-like 1 isoform a [Homo sapiens] 50 2e-06
gi|226423858 PRR5-ARHGAP8 fusion protein [Homo sapiens] 36 0.051
gi|66346660 Rho GTPase activating protein 8 isoform 2 [Homo sapi... 36 0.051
gi|81295809 pericentrin [Homo sapiens] 35 0.11
gi|30260188 Golgi autoantigen, golgin subfamily a, 5 [Homo sapiens] 34 0.20
gi|4757766 Rho GTPase activating protein 1 [Homo sapiens] 33 0.33
gi|207450721 ganglioside induced differentiation associated prot... 33 0.33
gi|8923143 ganglioside induced differentiation associated protei... 33 0.33
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens] 33 0.33
gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens] 33 0.43
>gi|4506541 retinaldehyde binding protein 1 [Homo sapiens]
Length = 317
Score = 636 bits (1641), Expect = 0.0
Identities = 317/317 (100%), Positives = 317/317 (100%)
Query: 1 MSEGVGTFRMVPEEEQELRAQLEQLTTKDHGPVFGPCSQLPRHTLQKAKDELNEREETRE 60
MSEGVGTFRMVPEEEQELRAQLEQLTTKDHGPVFGPCSQLPRHTLQKAKDELNEREETRE
Sbjct: 1 MSEGVGTFRMVPEEEQELRAQLEQLTTKDHGPVFGPCSQLPRHTLQKAKDELNEREETRE 60
Query: 61 EAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNF 120
EAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNF
Sbjct: 61 EAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNF 120
Query: 121 RLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAY 180
RLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAY
Sbjct: 121 RLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAY 180
Query: 181 CFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHF 240
CFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHF
Sbjct: 181 CFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHF 240
Query: 241 IHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGGTLPKYDGKA 300
IHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGGTLPKYDGKA
Sbjct: 241 IHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGGTLPKYDGKA 300
Query: 301 VAEQLFGPQAQAENTAF 317
VAEQLFGPQAQAENTAF
Sbjct: 301 VAEQLFGPQAQAENTAF 317
>gi|27734849 retinaldehyde binding protein 1-like 1 [Homo sapiens]
Length = 354
Score = 205 bits (522), Expect = 4e-53
Identities = 106/277 (38%), Positives = 161/277 (58%), Gaps = 12/277 (4%)
Query: 40 LPRHTLQKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRF 99
L T++KA+ ELNE + + ++++++M+ + G D F LRF
Sbjct: 30 LSPETIEKARLELNENPDVLHQDIQQVRDMIITRPDIG----------FLRTDDAFILRF 79
Query: 100 IRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPE--AVRCTIEAGYPGVLSSRDKYGRV 157
+RARKF+ A+ LL Y +R ++F + + ++ + G+PGVL +RD YGR
Sbjct: 80 LRARKFHQADAFRLLAQYFQYRQLNLDMFKNFKADDPGIKRALIDGFPGVLENRDHYGRK 139
Query: 158 VMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRT 217
++L NW +F +IL+A LE L+E+ E QINGF +I ++ F+ +QA+ L
Sbjct: 140 ILLLFAANWDQSRNSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKLTP 199
Query: 218 SDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFY 277
S L+ ++ LQDSFPARF +HF++QPWY Y ++KPFLK K +R+F+HG++L+ +
Sbjct: 200 SILKLAIEGLQDSFPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKRIFLHGNNLNSLH 259
Query: 278 QEIDENILPSDFGGTLPKYDGKAVAEQLFGPQAQAEN 314
Q I LPS+FGGTLP YD A L GP EN
Sbjct: 260 QLIHPEFLPSEFGGTLPPYDMGTWARTLLGPDYSDEN 296
>gi|71896667 retinaldehyde binding protein 1-like 2 [Homo sapiens]
Length = 327
Score = 201 bits (510), Expect = 9e-52
Identities = 104/260 (40%), Positives = 156/260 (60%), Gaps = 12/260 (4%)
Query: 40 LPRHTLQKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRF 99
L TL+KA+ ELNE +T + ++E+++MV + G D F LRF
Sbjct: 8 LSPETLEKARLELNENPDTLHQDIQEVRDMVITRPDIG----------FLRTDDAFILRF 57
Query: 100 IRARKFNVGRAYELLRGYVNFRLQYPELFDSL--SPEAVRCTIEAGYPGVLSSRDKYGRV 157
+RARKF+ A+ LL Y +R Q ++F S + ++ ++ G+PG L++ D YGR
Sbjct: 58 LRARKFHHFEAFRLLAQYFEYRQQNLDMFKSFKATDPGIKQALKDGFPGGLANLDHYGRK 117
Query: 158 VMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRT 217
+++ NW T +IL+A LE ++E+ E Q+NGF +I ++ FT +QA+ L
Sbjct: 118 ILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTP 177
Query: 218 SDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFY 277
S LR ++ LQDSFPARF IHF++QPWY Y V++PFLK K +R+F+HG++L+ +
Sbjct: 178 SMLRLAIEGLQDSFPARFGGIHFVNQPWYIHALYTVIRPFLKEKTRKRIFLHGNNLNSLH 237
Query: 278 QEIDENILPSDFGGTLPKYD 297
Q I ILPS+FGG LP YD
Sbjct: 238 QLIHPEILPSEFGGMLPPYD 257
>gi|85861243 tocopherol (alpha) transfer protein-like [Homo sapiens]
Length = 342
Score = 171 bits (433), Expect = 8e-43
Identities = 91/261 (34%), Positives = 152/261 (58%), Gaps = 11/261 (4%)
Query: 37 CSQLPRHTLQKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFF 96
CS L + KA++EL E+ E R V+ L++MV+ + + L+ ++ D F
Sbjct: 33 CS-LTEDLVTKAREELQEKPEWRLRDVQALRDMVRKEYPN---LSTSL-------DDAFL 81
Query: 97 LRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGR 156
LRF+RARKF+ RA +LL Y + R +PE+F++L P A++ + +G+ VL D G
Sbjct: 82 LRFLRARKFDYDRALQLLVNYHSCRRSWPEVFNNLKPSALKDVLASGFLTVLPHTDPRGC 141
Query: 157 VVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLR 216
V+ + W E ++A LEKL+++EETQ+NG I+ ++KG ++ +A+
Sbjct: 142 HVVCIRPDRWIPSNYPITENIRAIYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFG 201
Query: 217 TSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGF 276
+K++ +LQD FP R KA+H +++P F + ++KPFLK K+ R F+HG DL+
Sbjct: 202 PFIAKKVIGILQDGFPIRIKAVHVVNEPRIFKGIFAIIKPFLKEKIANRFFLHGSDLNSL 261
Query: 277 YQEIDENILPSDFGGTLPKYD 297
+ + +ILP ++GGT + D
Sbjct: 262 HTNLPRSILPKEYGGTAGELD 282
>gi|85861250 tocopherol (alpha) transfer protein-like [Homo sapiens]
Length = 342
Score = 171 bits (433), Expect = 8e-43
Identities = 91/261 (34%), Positives = 152/261 (58%), Gaps = 11/261 (4%)
Query: 37 CSQLPRHTLQKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFF 96
CS L + KA++EL E+ E R V+ L++MV+ + + L+ ++ D F
Sbjct: 33 CS-LTEDLVTKAREELQEKPEWRLRDVQALRDMVRKEYPN---LSTSL-------DDAFL 81
Query: 97 LRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGR 156
LRF+RARKF+ RA +LL Y + R +PE+F++L P A++ + +G+ VL D G
Sbjct: 82 LRFLRARKFDYDRALQLLVNYHSCRRSWPEVFNNLKPSALKDVLASGFLTVLPHTDPRGC 141
Query: 157 VVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLR 216
V+ + W E ++A LEKL+++EETQ+NG I+ ++KG ++ +A+
Sbjct: 142 HVVCIRPDRWIPSNYPITENIRAIYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFG 201
Query: 217 TSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGF 276
+K++ +LQD FP R KA+H +++P F + ++KPFLK K+ R F+HG DL+
Sbjct: 202 PFIAKKVIGILQDGFPIRIKAVHVVNEPRIFKGIFAIIKPFLKEKIANRFFLHGSDLNSL 261
Query: 277 YQEIDENILPSDFGGTLPKYD 297
+ + +ILP ++GGT + D
Sbjct: 262 HTNLPRSILPKEYGGTAGELD 282
>gi|4507723 tocopherol (alpha) transfer protein [Homo sapiens]
Length = 278
Score = 133 bits (334), Expect = 2e-31
Identities = 66/197 (33%), Positives = 113/197 (57%)
Query: 95 FFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKY 154
F LRF+RAR F++ A+ LL+ Y +R + PE+ L P ++ ++AGY GVL SRD
Sbjct: 51 FLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPT 110
Query: 155 GRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAAS 214
G V+++ I +W + T ++ + E +++ ETQ NG I + +G+ A
Sbjct: 111 GSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQ 170
Query: 215 LRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLS 274
+ S +K+ +L DSFP + + IH I++P F ++++KPFL K+ ER+ +HG++
Sbjct: 171 ITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYK 230
Query: 275 GFYQEIDENILPSDFGG 291
+ +ILP ++GG
Sbjct: 231 QSLLQHFPDILPLEYGG 247
>gi|4506301 protein tyrosine phosphatase, non-receptor type 9 [Homo
sapiens]
Length = 593
Score = 79.7 bits (195), Expect = 3e-15
Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 9/197 (4%)
Query: 97 LRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSP--EAVRCTIEAGYPGVLSSRDKY 154
++F+ ARKF+V RA EL Y R + E L P E +R I +G +L+ RD
Sbjct: 48 VKFLMARKFDVLRAIELFHSYRETRRK--EGIVKLKPHEEPLRSEILSGKFTILNVRDPT 105
Query: 155 GRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAAS 214
G + LF + +LQA ++L++ +++ ETQ NG I + G A+
Sbjct: 106 GASIALFTARLHHPHKSVQHVVLQALFYLLDRAVDSFETQRNGLVFIYDMCG---SNYAN 162
Query: 215 LRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLS 274
+K++++L+ +FPAR K + + P +F Y+++ LK K+ ER+ + S
Sbjct: 163 FELDLGKKVLNLLKGAFPARLKKVLIVGAPIWFRVPYSIISLLLKDKVRERIQIL--KTS 220
Query: 275 GFYQEIDENILPSDFGG 291
Q + LP + GG
Sbjct: 221 EVTQHLPRECLPENLGG 237
>gi|27923592 SEC14-like 3 [Homo sapiens]
Length = 400
Score = 63.2 bits (152), Expect = 3e-10
Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 18/221 (8%)
Query: 92 DSGFFLRFIRARKFNVGRAYELLRGYVNFR--LQYPELFDSLSPEAVRCTIEAGYPGVLS 149
D F LR++RAR F++ ++ LLR Y+ FR + + D PE I+ PG L
Sbjct: 34 DDYFLLRWLRARNFDLQKSEALLRKYMEFRKTMDIDHILDWQPPE----VIQKYMPGGLC 89
Query: 150 SRDKYGRVVMLFNIENWQSQ----EITFDEILQAYCFILEKLLENEETQ-------INGF 198
D+ G V I + +T ++L+ E++L + Q I
Sbjct: 90 GYDRDGCPVWYDIIGPLDPKGLLFSVTKQDLLKTKMRDCERILHECDLQTERLGKKIETI 149
Query: 199 CIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFL 258
+I + +G ++ ++ +L++++P K + + F YN++KPFL
Sbjct: 150 VMIFDCEGLGLKHFWKPLVEVYQEFFGLLEENYPETLKFMLIVKATKLFPVGYNLMKPFL 209
Query: 259 KSKLLERVFVHGDD-LSGFYQEIDENILPSDFGGTLPKYDG 298
++ V G++ G + I LP+ FGGTL DG
Sbjct: 210 SEDTRRKIIVLGNNWKEGLLKLISPEELPAQFGGTLTDPDG 250
>gi|169216042 PREDICTED: similar to SEC14p-like protein TAP3 [Homo
sapiens]
Length = 397
Score = 59.3 bits (142), Expect = 4e-09
Identities = 59/256 (23%), Positives = 112/256 (43%), Gaps = 30/256 (11%)
Query: 63 VRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRL 122
V +L + A E V + D F LR++RAR F++ ++ ++LR ++ FR
Sbjct: 5 VGDLSPSQEKSLAQFRENIQDVLSALPNPDDYFLLRWLRARSFDLQKSEDMLRKHMEFRK 64
Query: 123 QYPELFDSLS---PEAVRCTIEAGYPG-----------VLSSRDKYGRVVMLFNIENWQS 168
Q +L + L+ PE VR G G ++ S D G ++ +
Sbjct: 65 Q-QDLANILAWQPPEVVRLYNANGICGHDGEGSPVWYHIVGSLDPKGLLL------SASK 117
Query: 169 QEITFDEILQAYCFILEKLLENEE--TQINGFCIIENFKGFTMQQAASLRTSDLRKMVDM 226
QE+ D + E L++++ ++ I +G ++ L++
Sbjct: 118 QELLRDSFRSCELLLRECELQSQKLGKKVEKIIAIFGLEGLGLRDLWKPGIELLQEFFSA 177
Query: 227 LQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENI-- 284
L+ ++P K++ + P F +N+VK ++ + +V + GD+ + QE+ + I
Sbjct: 178 LEANYPEILKSLIVVRAPKLFAVAFNLVKSYMSEETRRKVVILGDN---WKQELTKFISP 234
Query: 285 --LPSDFGGTLPKYDG 298
LP +FGGT+ DG
Sbjct: 235 DQLPVEFGGTMTDPDG 250
>gi|209364516 SEC14-like 2 isoform 2 [Homo sapiens]
Length = 392
Score = 59.3 bits (142), Expect = 4e-09
Identities = 54/250 (21%), Positives = 102/250 (40%), Gaps = 18/250 (7%)
Query: 63 VRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRL 122
V +L + A E V + D F LR++RAR F++ ++ +LR +V FR
Sbjct: 5 VGDLSPRQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRK 64
Query: 123 Q--YPELFDSLSPEAVRCTIEAGYPG-----------VLSSRDKYGRVVMLFNIENWQSQ 169
Q + PE ++ + G G ++ D G + + +++
Sbjct: 65 QKDIDNIISWQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTK 124
Query: 170 EITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQD 229
+ +LQ KL ET II + +G ++ + + M ++
Sbjct: 125 MRECELLLQECAHQTTKLGRKVET----ITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEE 180
Query: 230 SFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSG-FYQEIDENILPSD 288
++P K + + P F YN++KPFL +++ V G + + I + +P +
Sbjct: 181 NYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVE 240
Query: 289 FGGTLPKYDG 298
+GGT+ DG
Sbjct: 241 YGGTMTDPDG 250
>gi|7110715 SEC14-like 2 isoform 1 [Homo sapiens]
Length = 403
Score = 59.3 bits (142), Expect = 4e-09
Identities = 54/250 (21%), Positives = 102/250 (40%), Gaps = 18/250 (7%)
Query: 63 VRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRL 122
V +L + A E V + D F LR++RAR F++ ++ +LR +V FR
Sbjct: 5 VGDLSPRQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRK 64
Query: 123 Q--YPELFDSLSPEAVRCTIEAGYPG-----------VLSSRDKYGRVVMLFNIENWQSQ 169
Q + PE ++ + G G ++ D G + + +++
Sbjct: 65 QKDIDNIISWQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTK 124
Query: 170 EITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQD 229
+ +LQ KL ET II + +G ++ + + M ++
Sbjct: 125 MRECELLLQECAHQTTKLGRKVET----ITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEE 180
Query: 230 SFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSG-FYQEIDENILPSD 288
++P K + + P F YN++KPFL +++ V G + + I + +P +
Sbjct: 181 NYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVE 240
Query: 289 FGGTLPKYDG 298
+GGT+ DG
Sbjct: 241 YGGTMTDPDG 250
>gi|169215836 PREDICTED: similar to SEC14p-like protein TAP3 [Homo
sapiens]
Length = 397
Score = 57.8 bits (138), Expect = 1e-08
Identities = 58/256 (22%), Positives = 112/256 (43%), Gaps = 30/256 (11%)
Query: 63 VRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRL 122
V +L + A E V + D F LR+++AR F++ ++ ++LR ++ FR
Sbjct: 5 VGDLSPSQEKSLAQFRENIQDVLSALPNPDDYFLLRWLQARSFDLQKSEDMLRKHMEFRK 64
Query: 123 QYPELFDSLS---PEAVRCTIEAGYPG-----------VLSSRDKYGRVVMLFNIENWQS 168
Q +L + L+ PE VR G G ++ S D G ++ +
Sbjct: 65 Q-QDLANILAWQPPEVVRLYNANGICGHDGEGSPVWYHIVGSLDPKGLLL------SASK 117
Query: 169 QEITFDEILQAYCFILEKLLENEE--TQINGFCIIENFKGFTMQQAASLRTSDLRKMVDM 226
QE+ D + E L++++ ++ I +G ++ L++
Sbjct: 118 QELLRDSFRSCELLLRECELQSQKLGKRVEKIIAIFGLEGLGLRDLWKPGIELLQEFFSA 177
Query: 227 LQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENI-- 284
L+ ++P K++ + P F +N+VK ++ + +V + GD+ + QE+ + I
Sbjct: 178 LEANYPEILKSLIVVRAPKLFAVAFNLVKSYMSEETRRKVVILGDN---WKQELTKFISP 234
Query: 285 --LPSDFGGTLPKYDG 298
LP +FGGT+ DG
Sbjct: 235 DQLPVEFGGTMTDPDG 250
>gi|169215635 PREDICTED: similar to SEC14p-like protein TAP3 [Homo
sapiens]
Length = 397
Score = 57.8 bits (138), Expect = 1e-08
Identities = 58/256 (22%), Positives = 112/256 (43%), Gaps = 30/256 (11%)
Query: 63 VRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRL 122
V +L + A E V + D F LR+++AR F++ ++ ++LR ++ FR
Sbjct: 5 VGDLSPSQEKSLAQFRENIQDVLSALPNPDDYFLLRWLQARSFDLQKSEDMLRKHMEFRK 64
Query: 123 QYPELFDSLS---PEAVRCTIEAGYPG-----------VLSSRDKYGRVVMLFNIENWQS 168
Q +L + L+ PE VR G G ++ S D G ++ +
Sbjct: 65 Q-QDLANILAWQPPEVVRLYNANGICGHDGEGSPVWYHIVGSLDPKGLLL------SASK 117
Query: 169 QEITFDEILQAYCFILEKLLENEE--TQINGFCIIENFKGFTMQQAASLRTSDLRKMVDM 226
QE+ D + E L++++ ++ I +G ++ L++
Sbjct: 118 QELLRDSFRSCELLLRECELQSQKLGKRVEKIIAIFGLEGLGLRDLWKPGIELLQEFFSA 177
Query: 227 LQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENI-- 284
L+ ++P K++ + P F +N+VK ++ + +V + GD+ + QE+ + I
Sbjct: 178 LEANYPEILKSLIVVRAPKLFAVAFNLVKSYMSEETRRKVVILGDN---WKQELTKFISP 234
Query: 285 --LPSDFGGTLPKYDG 298
LP +FGGT+ DG
Sbjct: 235 DQLPVEFGGTMTDPDG 250
>gi|238624167 SEC14p-like protein TAP3 isoform b [Homo sapiens]
Length = 360
Score = 57.4 bits (137), Expect = 2e-08
Identities = 50/224 (22%), Positives = 103/224 (45%), Gaps = 24/224 (10%)
Query: 92 DSGFFLRFIRARKFNVGRAYELLRGYVNFRLQ--YPELFDSLSPEAVRCTIEAG------ 143
D F LR++RAR F++ ++ ++LR ++ FR Q + PE ++ G
Sbjct: 34 DDYFLLRWLRARNFDLQKSEDMLRRHMEFRKQQDLDNIVTWQPPEVIQLYDSGGLCGYDY 93
Query: 144 -----YPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGF 198
Y ++ S D G +++ + ++ + I E+L C + + L +I
Sbjct: 94 EGCPVYFNIIGSLDPKG-LLLSASKQDMIRKRIKVCELLLHECELQTQKLGR---KIEMA 149
Query: 199 CIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFL 258
++ + +G +++ ++ +L+ ++P K + I P F +N+VK F+
Sbjct: 150 LMVFDMEGLSLKHLWKPAVEVYQQFFSILEANYPETLKNLIVIRAPKLFPVAFNLVKSFM 209
Query: 259 KSKLLERVFVHGDDLSGFYQEIDENI----LPSDFGGTLPKYDG 298
+ ++ + GD+ + QE+ + I LP +FGGT+ DG
Sbjct: 210 SEETRRKIVILGDN---WKQELTKFISPDQLPVEFGGTMTDPDG 250
>gi|28376621 SEC14p-like protein TAP3 isoform a [Homo sapiens]
Length = 406
Score = 57.4 bits (137), Expect = 2e-08
Identities = 50/224 (22%), Positives = 103/224 (45%), Gaps = 24/224 (10%)
Query: 92 DSGFFLRFIRARKFNVGRAYELLRGYVNFRLQ--YPELFDSLSPEAVRCTIEAG------ 143
D F LR++RAR F++ ++ ++LR ++ FR Q + PE ++ G
Sbjct: 34 DDYFLLRWLRARNFDLQKSEDMLRRHMEFRKQQDLDNIVTWQPPEVIQLYDSGGLCGYDY 93
Query: 144 -----YPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGF 198
Y ++ S D G +++ + ++ + I E+L C + + L +I
Sbjct: 94 EGCPVYFNIIGSLDPKG-LLLSASKQDMIRKRIKVCELLLHECELQTQKLGR---KIEMA 149
Query: 199 CIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFL 258
++ + +G +++ ++ +L+ ++P K + I P F +N+VK F+
Sbjct: 150 LMVFDMEGLSLKHLWKPAVEVYQQFFSILEANYPETLKNLIVIRAPKLFPVAFNLVKSFM 209
Query: 259 KSKLLERVFVHGDDLSGFYQEIDENI----LPSDFGGTLPKYDG 298
+ ++ + GD+ + QE+ + I LP +FGGT+ DG
Sbjct: 210 SEETRRKIVILGDN---WKQELTKFISPDQLPVEFGGTMTDPDG 250
>gi|150010661 SEC14-like 5 [Homo sapiens]
Length = 696
Score = 52.8 bits (125), Expect = 4e-07
Identities = 48/242 (19%), Positives = 103/242 (42%), Gaps = 30/242 (12%)
Query: 97 LRFIRARKFNVGRAYELLRGYVNFRLQYPE--LFDSLSPEAVRCTIEAGYPGVLSSRDKY 154
LRF+RA F++ +A E+LR +++R Q+ L + P A+ +E Y G +D
Sbjct: 268 LRFLRAHDFHLDKAREMLRQSLSWRKQHQVDLLLQTWQPPAL---LEEFYAGGWHYQDID 324
Query: 155 GRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQ-------------INGFCII 201
GR + + + ++ + + + + L NEE Q I+ + +
Sbjct: 325 GRPLYILRLGQMDTKGLM--KAVGEEALLRHVLSVNEEGQKRCEGSTRQLGRPISSWTCL 382
Query: 202 ENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSK 261
+ +G M+ L +M+++++D++P + + P F + ++ PF+
Sbjct: 383 LDLEGLNMRHLWRPGVKALLRMIEVVEDNYPETLGRLLIVRAPRVFPVLWTLISPFINEN 442
Query: 262 LLERVFVHG----DDLSGFYQEIDENILPSDFGG----TLPKYDGKAVAEQLFGPQAQAE 313
+ ++ G +D ++P GG +P +G V + L+ + + E
Sbjct: 443 TRRKFLIYSGSNYQGPGGLVDYLDREVIPDFLGGESVCNVP--EGGLVPKSLYMTEEEQE 500
Query: 314 NT 315
+T
Sbjct: 501 HT 502
>gi|221316687 SEC14 (S. cerevisiae)-like 1 isoform c [Homo sapiens]
Length = 681
Score = 50.4 bits (119), Expect = 2e-06
Identities = 54/262 (20%), Positives = 110/262 (41%), Gaps = 28/262 (10%)
Query: 78 EELAVAVAERVQEKDSG------FFLRFIRARKFNVGRAYELLRGYVNFRLQY--PELFD 129
E + + + +QE G LRF+RAR FN+ +A E++ + +R Q+ + +
Sbjct: 222 ESCLIRLRQWLQETHKGKIPKDEHILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYILE 281
Query: 130 SLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEIT---FDEILQAYCFIL-- 184
+ +P V ++ Y G DK GR + + + ++ + +E L Y +
Sbjct: 282 TWTPPQV---LQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVRALGEEALLRYVLSINE 338
Query: 185 EKLLENEET------QINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAI 238
E L EE I+ + + + +G M+ L +++++++ ++P +
Sbjct: 339 EGLRRCEENTKVFGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVEANYPETLGRL 398
Query: 239 HFIHQPWYFTTTYNVVKPFLKSKLLERVFVH-GDDL---SGFYQEIDENILPSDFGG--T 292
+ P F + +V PF+ + ++ G+D G ID+ I+P G
Sbjct: 399 LILRAPRVFPVLWTLVSPFIDDNTRRKFLIYAGNDYQGPGGLLDYIDKEIIPDFLSGECM 458
Query: 293 LPKYDGKAVAEQLFGPQAQAEN 314
+G V + L+ + EN
Sbjct: 459 CEVPEGGLVPKSLYRTAEELEN 480
>gi|221316680 SEC14 (S. cerevisiae)-like 1 isoform a [Homo sapiens]
Length = 715
Score = 50.4 bits (119), Expect = 2e-06
Identities = 54/262 (20%), Positives = 110/262 (41%), Gaps = 28/262 (10%)
Query: 78 EELAVAVAERVQEKDSG------FFLRFIRARKFNVGRAYELLRGYVNFRLQY--PELFD 129
E + + + +QE G LRF+RAR FN+ +A E++ + +R Q+ + +
Sbjct: 256 ESCLIRLRQWLQETHKGKIPKDEHILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYILE 315
Query: 130 SLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEIT---FDEILQAYCFIL-- 184
+ +P V ++ Y G DK GR + + + ++ + +E L Y +
Sbjct: 316 TWTPPQV---LQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVRALGEEALLRYVLSINE 372
Query: 185 EKLLENEET------QINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAI 238
E L EE I+ + + + +G M+ L +++++++ ++P +
Sbjct: 373 EGLRRCEENTKVFGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVEANYPETLGRL 432
Query: 239 HFIHQPWYFTTTYNVVKPFLKSKLLERVFVH-GDDL---SGFYQEIDENILPSDFGG--T 292
+ P F + +V PF+ + ++ G+D G ID+ I+P G
Sbjct: 433 LILRAPRVFPVLWTLVSPFIDDNTRRKFLIYAGNDYQGPGGLLDYIDKEIIPDFLSGECM 492
Query: 293 LPKYDGKAVAEQLFGPQAQAEN 314
+G V + L+ + EN
Sbjct: 493 CEVPEGGLVPKSLYRTAEELEN 514
>gi|221316676 SEC14 (S. cerevisiae)-like 1 isoform a [Homo sapiens]
Length = 715
Score = 50.4 bits (119), Expect = 2e-06
Identities = 54/262 (20%), Positives = 110/262 (41%), Gaps = 28/262 (10%)
Query: 78 EELAVAVAERVQEKDSG------FFLRFIRARKFNVGRAYELLRGYVNFRLQY--PELFD 129
E + + + +QE G LRF+RAR FN+ +A E++ + +R Q+ + +
Sbjct: 256 ESCLIRLRQWLQETHKGKIPKDEHILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYILE 315
Query: 130 SLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEIT---FDEILQAYCFIL-- 184
+ +P V ++ Y G DK GR + + + ++ + +E L Y +
Sbjct: 316 TWTPPQV---LQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVRALGEEALLRYVLSINE 372
Query: 185 EKLLENEET------QINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAI 238
E L EE I+ + + + +G M+ L +++++++ ++P +
Sbjct: 373 EGLRRCEENTKVFGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVEANYPETLGRL 432
Query: 239 HFIHQPWYFTTTYNVVKPFLKSKLLERVFVH-GDDL---SGFYQEIDENILPSDFGG--T 292
+ P F + +V PF+ + ++ G+D G ID+ I+P G
Sbjct: 433 LILRAPRVFPVLWTLVSPFIDDNTRRKFLIYAGNDYQGPGGLLDYIDKEIIPDFLSGECM 492
Query: 293 LPKYDGKAVAEQLFGPQAQAEN 314
+G V + L+ + EN
Sbjct: 493 CEVPEGGLVPKSLYRTAEELEN 514
>gi|221316684 SEC14 (S. cerevisiae)-like 1 isoform b [Homo sapiens]
Length = 719
Score = 50.4 bits (119), Expect = 2e-06
Identities = 54/262 (20%), Positives = 110/262 (41%), Gaps = 28/262 (10%)
Query: 78 EELAVAVAERVQEKDSG------FFLRFIRARKFNVGRAYELLRGYVNFRLQY--PELFD 129
E + + + +QE G LRF+RAR FN+ +A E++ + +R Q+ + +
Sbjct: 256 ESCLIRLRQWLQETHKGKIPKDEHILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYILE 315
Query: 130 SLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEIT---FDEILQAYCFIL-- 184
+ +P V ++ Y G DK GR + + + ++ + +E L Y +
Sbjct: 316 TWTPPQV---LQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVRALGEEALLRYVLSINE 372
Query: 185 EKLLENEET------QINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAI 238
E L EE I+ + + + +G M+ L +++++++ ++P +
Sbjct: 373 EGLRRCEENTKVFGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVEANYPETLGRL 432
Query: 239 HFIHQPWYFTTTYNVVKPFLKSKLLERVFVH-GDDL---SGFYQEIDENILPSDFGG--T 292
+ P F + +V PF+ + ++ G+D G ID+ I+P G
Sbjct: 433 LILRAPRVFPVLWTLVSPFIDDNTRRKFLIYAGNDYQGPGGLLDYIDKEIIPDFLSGECM 492
Query: 293 LPKYDGKAVAEQLFGPQAQAEN 314
+G V + L+ + EN
Sbjct: 493 CEVPEGGLVPKSLYRTAEELEN 514
>gi|221316682 SEC14 (S. cerevisiae)-like 1 isoform a [Homo sapiens]
Length = 715
Score = 50.4 bits (119), Expect = 2e-06
Identities = 54/262 (20%), Positives = 110/262 (41%), Gaps = 28/262 (10%)
Query: 78 EELAVAVAERVQEKDSG------FFLRFIRARKFNVGRAYELLRGYVNFRLQY--PELFD 129
E + + + +QE G LRF+RAR FN+ +A E++ + +R Q+ + +
Sbjct: 256 ESCLIRLRQWLQETHKGKIPKDEHILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYILE 315
Query: 130 SLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEIT---FDEILQAYCFIL-- 184
+ +P V ++ Y G DK GR + + + ++ + +E L Y +
Sbjct: 316 TWTPPQV---LQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVRALGEEALLRYVLSINE 372
Query: 185 EKLLENEET------QINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAI 238
E L EE I+ + + + +G M+ L +++++++ ++P +
Sbjct: 373 EGLRRCEENTKVFGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVEANYPETLGRL 432
Query: 239 HFIHQPWYFTTTYNVVKPFLKSKLLERVFVH-GDDL---SGFYQEIDENILPSDFGG--T 292
+ P F + +V PF+ + ++ G+D G ID+ I+P G
Sbjct: 433 LILRAPRVFPVLWTLVSPFIDDNTRRKFLIYAGNDYQGPGGLLDYIDKEIIPDFLSGECM 492
Query: 293 LPKYDGKAVAEQLFGPQAQAEN 314
+G V + L+ + EN
Sbjct: 493 CEVPEGGLVPKSLYRTAEELEN 514
>gi|226423858 PRR5-ARHGAP8 fusion protein [Homo sapiens]
Length = 555
Score = 35.8 bits (81), Expect = 0.051
Identities = 32/151 (21%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 152 DKYGRVVMLFNIENWQ-SQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQ 210
D++GR V+ F+ S E+ +L+ + L++ +EN+ T I+ G +
Sbjct: 151 DRFGRRVVTFSCCRMPPSHELDHQRLLEYLKYTLDQYVENDYT------IVYFHYGLNSR 204
Query: 211 QAASLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHG 270
SL L+ + KA++ +H + +N++KP + K ++V ++
Sbjct: 205 NKPSLGW--LQSAYKEFDRKYKKNLKALYVVHPTSFIKVLWNILKPLISHKFGKKV-IYF 261
Query: 271 DDLSGFYQEI--DENILPSDFGGTLPKYDGK 299
+ LS ++ + D+ ++P + + +YD K
Sbjct: 262 NYLSELHEHLKYDQLVIPPE----VLRYDEK 288
>gi|66346660 Rho GTPase activating protein 8 isoform 2 [Homo
sapiens]
Length = 433
Score = 35.8 bits (81), Expect = 0.051
Identities = 32/151 (21%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 152 DKYGRVVMLFNIENWQ-SQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQ 210
D++GR V+ F+ S E+ +L+ + L++ +EN+ T I+ G +
Sbjct: 29 DRFGRRVVTFSCCRMPPSHELDHQRLLEYLKYTLDQYVENDYT------IVYFHYGLNSR 82
Query: 211 QAASLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHG 270
SL L+ + KA++ +H + +N++KP + K ++V ++
Sbjct: 83 NKPSLGW--LQSAYKEFDRKYKKNLKALYVVHPTSFIKVLWNILKPLISHKFGKKV-IYF 139
Query: 271 DDLSGFYQEI--DENILPSDFGGTLPKYDGK 299
+ LS ++ + D+ ++P + + +YD K
Sbjct: 140 NYLSELHEHLKYDQLVIPPE----VLRYDEK 166
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 34.7 bits (78), Expect = 0.11
Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 23/193 (11%)
Query: 10 MVPEEEQELRAQLEQLTTKDHGPVFGPCSQLPRHTLQKAKDELNEREETREEAVRELQEM 69
M+ +E EL+A L++L + + G SQL L+ +RE +A+ EL+
Sbjct: 2640 MLSSKENELKAALQELES-EQGKGRALQSQLEEEQLRHL-----QRESQSAKALEELRAS 2693
Query: 70 VQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFD 129
++ Q A L VA+ KD+ + + R LL R Q EL
Sbjct: 2694 LETQRAQSSRLCVALKHEQTAKDN-----LQKELRIEHSRCEALL---AQERSQLSELQK 2745
Query: 130 SLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLE 189
L+ E R T+E LS ++ R +L + ++QE + QA+ +L+KL E
Sbjct: 2746 DLAAEKSR-TLE------LSEALRHER--LLTEQLSQRTQEACVHQDTQAHHALLQKLKE 2796
Query: 190 NEETQINGFCIIE 202
+ ++ ++E
Sbjct: 2797 EKSRVVDLQAMLE 2809
>gi|30260188 Golgi autoantigen, golgin subfamily a, 5 [Homo sapiens]
Length = 731
Score = 33.9 bits (76), Expect = 0.20
Identities = 53/224 (23%), Positives = 88/224 (39%), Gaps = 18/224 (8%)
Query: 18 LRAQLEQLTTKDHGPVFGPCSQLP--RHTLQKAKDELNEREETREEAVRELQEMVQAQAA 75
LRAQ++ LT V SQL + LQ+A L+ R E E E ++Q Q+
Sbjct: 283 LRAQVDDLTEA----VAAKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQS- 337
Query: 76 SGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEA 135
G L + QE+ L A +Y+ ++ RL E+ EA
Sbjct: 338 EGNSLQNQALQTFQER-----LHEADATLKREQESYKQMQSEFAARLNKVEMERQNLAEA 392
Query: 136 VRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQI 195
+ E Y D+ + V L+ + S++ D +A ++L+++E I
Sbjct: 393 ITLA-ERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKA-----TRILQSKEKLI 446
Query: 196 NGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIH 239
N F+G A+S+ +LR +M ++ IH
Sbjct: 447 NSLKEGSGFEGLDSSTASSMELEELRHEKEMQREEIQKLMGQIH 490
>gi|4757766 Rho GTPase activating protein 1 [Homo sapiens]
Length = 439
Score = 33.1 bits (74), Expect = 0.33
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 152 DKYGRVVMLFNIENWQ-SQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQ 210
DKYGR +++F+ S ++ ++L L++ +E++ T ++ G T
Sbjct: 79 DKYGRKIIVFSACRMPPSHQLDHSKLLGYLKHTLDQYVESDYT------LLYLHHGLTSD 132
Query: 211 QAASLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVF 267
SL S LR + KA++ +H + T + KP + K +++F
Sbjct: 133 NKPSL--SWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPLISFKFGQKIF 187
>gi|207450721 ganglioside induced differentiation associated protein
2 isoform b [Homo sapiens]
Length = 496
Score = 33.1 bits (74), Expect = 0.33
Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 25/155 (16%)
Query: 152 DKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQ 211
D GR VM+ N I D+ L + +++ + E + + +
Sbjct: 346 DNCGRTVMVVVGRNIPVTLIDMDKALLYFIHVMDHIAVKEYVLVYFHTLTSEYN------ 399
Query: 212 AASLRTSDLRKMVDMLQDSFPARFKAIHFIH-------QPWYFTTTYNVVKPFLKSKLLE 264
L + L+K+ D++ + KA++F+H W+FTT F S L +
Sbjct: 400 --HLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTT-------FSVSGLKD 450
Query: 265 RVFVHGDDLSGFYQEIDENILPSDFGGTLPKYDGK 299
++ H D L + I + DF + +YD +
Sbjct: 451 KIH-HVDSLHQLFSAISPEQI--DFPPFVLEYDAR 482
>gi|8923143 ganglioside induced differentiation associated protein 2
isoform a [Homo sapiens]
Length = 497
Score = 33.1 bits (74), Expect = 0.33
Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 25/155 (16%)
Query: 152 DKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQ 211
D GR VM+ N I D+ L + +++ + E + + +
Sbjct: 346 DNCGRTVMVVVGRNIPVTLIDMDKALLYFIHVMDHIAVKEYVLVYFHTLTSEYN------ 399
Query: 212 AASLRTSDLRKMVDMLQDSFPARFKAIHFIH-------QPWYFTTTYNVVKPFLKSKLLE 264
L + L+K+ D++ + KA++F+H W+FTT F S L +
Sbjct: 400 --HLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTT-------FSVSGLKD 450
Query: 265 RVFVHGDDLSGFYQEIDENILPSDFGGTLPKYDGK 299
++ H D L + I + DF + +YD +
Sbjct: 451 KIH-HVDSLHQLFSAISPEQI--DFPPFVLEYDAR 482
>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
Length = 1498
Score = 33.1 bits (74), Expect = 0.33
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 17/82 (20%)
Query: 13 EEEQELRAQLEQLTTKDHGPVFGPCSQLPRHTLQKAKDELNEREET-------REEAVRE 65
+E+ EL+AQL L+TK V CS H+ Q+ +D L+ +T E A+ +
Sbjct: 433 KEKAELQAQLAALSTKLQAQV--ECS----HSSQQRQDSLSSEVDTLKQSCWDLERAMTD 486
Query: 66 LQEMVQAQ----AASGEELAVA 83
LQ M++A+ A+S +L VA
Sbjct: 487 LQNMLEAKNASLASSNNDLQVA 508
>gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens]
Length = 1217
Score = 32.7 bits (73), Expect = 0.43
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 13 EEEQELRAQLEQLTTKDHGPVFGPCSQLPRHTLQKAKDELNEREETREEAVRELQEMVQA 72
+E E RA+L++L+ K G S+ R Q A+D++ E E VREL+ + A
Sbjct: 230 QELNETRAKLDELSAKRE--TSGEKSRQLRDAQQDARDKM----EDIERQVRELKTKISA 283
Query: 73 QAASGEELAVAVAERVQEK 91
E+L+ E+++++
Sbjct: 284 MKEEKEQLSAERQEQIKQR 302
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,442,458
Number of Sequences: 37866
Number of extensions: 485871
Number of successful extensions: 2437
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 2238
Number of HSP's gapped (non-prelim): 247
length of query: 317
length of database: 18,247,518
effective HSP length: 102
effective length of query: 215
effective length of database: 14,385,186
effective search space: 3092814990
effective search space used: 3092814990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.