Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC730005 Sequence: fasta or formatted (397aa) NCBI GI: 169215836
Description:

PREDICTED: similar to SEC14p-like protein TAP3

Not currently referenced in the text

Other entries for this name:
alt mRNA {397aa} PREDICTED: similar to SEC14p-like protein TAP3
alt prot {397aa} PREDICTED: similar to SEC14p-like protein TAP3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         17           1
 C cysteine            1.8          7           1
 D aspartate           4.8         19           2
 E glutamate           7.8         31           2
 F phenylalanine       4.8         19           2
 G glycine             7.3         29           2
 H histidine           1.5          6           1
 I isoleucine          4.3         17           2
 K lysine              6.3         25           1
 L leucine            12.8         51           3
 M methionine          2.5         10           1
 N asparagine          3.3         13           1
 P proline             4.8         19           2
 Q glutamine           5.8         23           2
 R arginine            6.0         24           2
 S serine              7.3         29           2
 T threonine           3.0         12           1
 V valine              6.5         26           2
 W tryptophan          1.5          6           1
 Y tyrosine            3.5         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to SEC14p-like protein TAP3 [Hom... 
LOC730005             1.000   PREDICTED: similar to SEC14p-like protein TAP3 [Hom...
LOC730005             0.996   PREDICTED: similar to SEC14p-like protein TAP3 [Hom...
SEC14L4               0.816   SEC14p-like protein TAP3 isoform a 
SEC14L4               0.758   SEC14p-like protein TAP3 isoform b 
SEC14L3               0.711   SEC14-like 3 
SEC14L2               0.707   SEC14-like 2 isoform 1 
SEC14L2               0.647   SEC14-like 2 isoform 2 
SEC14L5               0.190   SEC14-like 5 
SEC14L1               0.184   SEC14 (S. cerevisiae)-like 1 isoform c 
SEC14L1               0.184   SEC14 (S. cerevisiae)-like 1 isoform a 
SEC14L1               0.184   SEC14 (S. cerevisiae)-like 1 isoform a 
SEC14L1               0.184   SEC14 (S. cerevisiae)-like 1 isoform b 
SEC14L1               0.184   SEC14 (S. cerevisiae)-like 1 isoform a 
TTPA                  0.075   tocopherol (alpha) transfer protein 
RLBP1L1               0.044   retinaldehyde binding protein 1-like 1 
RLBP1L2               0.044   retinaldehyde binding protein 1-like 2 
RLBP1                 0.042   retinaldehyde binding protein 1 
TTPAL                 0.037   tocopherol (alpha) transfer protein-like 
TTPAL                 0.037   tocopherol (alpha) transfer protein-like 
ACBD3                 0.027   acyl-Coenzyme A binding domain containing 3 
MOSPD2                0.022   motile sperm domain containing 2 
FYCO1                 0.022   FYVE and coiled-coil domain containing 1 
TMED8                 0.012   transmembrane emp24 protein transport domain contain...
CPXM2                 0.012   carboxypeptidase X (M14 family), member 2 
CLOCK                 0.010   clock 
BMX                   0.010   BMX non-receptor tyrosine kinase 
BMX                   0.010   BMX non-receptor tyrosine kinase 
EFCAB6                0.009   CAP-binding protein complex interacting protein 1 is...
EFCAB6                0.009   CAP-binding protein complex interacting protein 1 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press