Guide to the Human Genome
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Name: LOC730005 Sequence: fasta or formatted (397aa) NCBI GI: 169216042
Description:

PREDICTED: similar to SEC14p-like protein TAP3

Not currently referenced in the text

Other entries for this name:
alt prot {397aa} PREDICTED: similar to SEC14p-like protein TAP3
alt prot {397aa} PREDICTED: similar to SEC14p-like protein TAP3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         17           1
 C cysteine            1.8          7           1
 D aspartate           4.8         19           2
 E glutamate           7.8         31           2
 F phenylalanine       4.8         19           2
 G glycine             7.3         29           2
 H histidine           1.5          6           1
 I isoleucine          4.3         17           2
 K lysine              6.5         26           2
 L leucine            12.8         51           3
 M methionine          2.5         10           1
 N asparagine          3.3         13           1
 P proline             4.8         19           2
 Q glutamine           5.5         22           2
 R arginine            6.0         24           2
 S serine              7.3         29           2
 T threonine           3.0         12           1
 V valine              6.5         26           2
 W tryptophan          1.5          6           1
 Y tyrosine            3.5         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to SEC14p-like protein TAP3 [Hom... 
LOC730005             0.996   PREDICTED: similar to SEC14p-like protein TAP3 [Hom...
LOC730005             0.996   PREDICTED: similar to SEC14p-like protein TAP3 [Hom...
SEC14L4               0.819   SEC14p-like protein TAP3 isoform a 
SEC14L4               0.762   SEC14p-like protein TAP3 isoform b 
SEC14L3               0.713   SEC14-like 3 
SEC14L2               0.711   SEC14-like 2 isoform 1 
SEC14L2               0.650   SEC14-like 2 isoform 2 
SEC14L5               0.193   SEC14-like 5 
SEC14L1               0.186   SEC14 (S. cerevisiae)-like 1 isoform c 
SEC14L1               0.186   SEC14 (S. cerevisiae)-like 1 isoform a 
SEC14L1               0.186   SEC14 (S. cerevisiae)-like 1 isoform a 
SEC14L1               0.186   SEC14 (S. cerevisiae)-like 1 isoform b 
SEC14L1               0.186   SEC14 (S. cerevisiae)-like 1 isoform a 
TTPA                  0.076   tocopherol (alpha) transfer protein 
RLBP1L1               0.046   retinaldehyde binding protein 1-like 1 
RLBP1L2               0.045   retinaldehyde binding protein 1-like 2 
RLBP1                 0.044   retinaldehyde binding protein 1 
TTPAL                 0.039   tocopherol (alpha) transfer protein-like 
TTPAL                 0.039   tocopherol (alpha) transfer protein-like 
ACBD3                 0.027   acyl-Coenzyme A binding domain containing 3 
FYCO1                 0.022   FYVE and coiled-coil domain containing 1 
MOSPD2                0.022   motile sperm domain containing 2 
TMED8                 0.012   transmembrane emp24 protein transport domain contain...
CPXM2                 0.012   carboxypeptidase X (M14 family), member 2 
EFCAB6                0.010   CAP-binding protein complex interacting protein 1 is...
EFCAB6                0.010   CAP-binding protein complex interacting protein 1 is...
CLOCK                 0.010   clock 
BMX                   0.009   BMX non-receptor tyrosine kinase 
BMX                   0.009   BMX non-receptor tyrosine kinase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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