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Search of human proteins with 4506491
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506491 replication factor C 4 [Homo sapiens]
(363 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31881687 replication factor C 4 [Homo sapiens] 706 0.0
gi|4506491 replication factor C 4 [Homo sapiens] 706 0.0
gi|6677723 replication factor C 5 isoform 1 [Homo sapiens] 219 3e-57
gi|194306571 replication factor C 5 isoform 2 [Homo sapiens] 210 1e-54
gi|194306567 replication factor C 5 isoform 2 [Homo sapiens] 210 1e-54
gi|31563534 replication factor C 2 isoform 1 [Homo sapiens] 199 4e-51
gi|194306569 replication factor C 5 isoform 3 [Homo sapiens] 152 6e-37
gi|28882049 replication factor C 2 isoform 2 [Homo sapiens] 151 1e-36
gi|108773789 replication factor C 3 isoform 2 [Homo sapiens] 113 3e-25
gi|4506489 replication factor C 3 isoform 1 [Homo sapiens] 113 3e-25
gi|32528306 replication factor C large subunit [Homo sapiens] 52 1e-06
gi|27501458 CTF18, chromosome transmission fidelity factor 18 ho... 45 8e-05
gi|31377667 peroxisomal LON protease-like [Homo sapiens] 43 4e-04
gi|19718796 RAD17 homolog isoform 1 [Homo sapiens] 40 0.002
gi|19718794 RAD17 homolog isoform 1 [Homo sapiens] 40 0.002
gi|19718792 RAD17 homolog isoform 1 [Homo sapiens] 40 0.002
gi|19718784 RAD17 homolog isoform 1 [Homo sapiens] 40 0.002
gi|4506383 RAD17 homolog isoform 1 [Homo sapiens] 40 0.002
gi|19718786 RAD17 homolog isoform 2 [Homo sapiens] 40 0.002
gi|195539395 proteasome 26S ATPase subunit 6 [Homo sapiens] 39 0.007
gi|219282747 KIAA1772 [Homo sapiens] 37 0.021
gi|18426904 Werner helicase interacting protein isoform 2 [Homo ... 37 0.028
gi|18426902 Werner helicase interacting protein isoform 1 [Homo ... 37 0.028
gi|6005942 valosin-containing protein [Homo sapiens] 35 0.080
gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens] 35 0.14
gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens] 35 0.14
gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens] 34 0.18
gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens] 34 0.18
gi|21327685 YME1-like 1 isoform 1 [Homo sapiens] 34 0.23
gi|7657689 YME1-like 1 isoform 3 [Homo sapiens] 34 0.23
>gi|31881687 replication factor C 4 [Homo sapiens]
Length = 363
Score = 706 bits (1822), Expect = 0.0
Identities = 363/363 (100%), Positives = 363/363 (100%)
Query: 1 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK 240
NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 241 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG 300
AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG
Sbjct: 241 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG 300
Query: 301 HAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLS 360
HAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLS
Sbjct: 301 HAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLS 360
Query: 361 QNC 363
QNC
Sbjct: 361 QNC 363
>gi|4506491 replication factor C 4 [Homo sapiens]
Length = 363
Score = 706 bits (1822), Expect = 0.0
Identities = 363/363 (100%), Positives = 363/363 (100%)
Query: 1 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK 240
NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 241 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG 300
AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG
Sbjct: 241 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG 300
Query: 301 HAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLS 360
HAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLS
Sbjct: 301 HAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLS 360
Query: 361 QNC 363
QNC
Sbjct: 361 QNC 363
>gi|6677723 replication factor C 5 isoform 1 [Homo sapiens]
Length = 340
Score = 219 bits (558), Expect = 3e-57
Identities = 125/321 (38%), Positives = 196/321 (61%), Gaps = 10/321 (3%)
Query: 34 KAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAAR 93
K + +PWVEKYRP+ ++++ +++++ ++K + LP+LL YGPPGTGKTSTILA A+
Sbjct: 16 KIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAK 75
Query: 94 ELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEAD 153
+L+ + F VLELNASD+RGI ++R + +FA + FK+VILDEAD
Sbjct: 76 QLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-------FKLVILDEAD 128
Query: 154 SMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLD 213
+MT AQ ALRR +EK ++ TRFCLICNY+S+II L SRC++FRF PL+ ++ RL
Sbjct: 129 AMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Query: 214 IAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEK 273
+ ++E V IS++G+ LV +S GD+R+A+ LQS T + GK +TE+ + G
Sbjct: 189 VVEEEKVDISEDGMKALVTLSSGDMRRALNILQS-TNMAFGK-VTEETVYTCTGHPLKSD 246
Query: 274 IDGVFAACQSGSFDKLEAVVKDLID-EGHAATQLVNQLHDVVVENNLSDKQKSIITEKLA 332
I + + F + +L +G A ++ ++H V + + + K+A
Sbjct: 247 IANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMA 306
Query: 333 EVDKCLADGADEHLQLISLCA 353
+++ L+ G +E +QL SL A
Sbjct: 307 DIEYRLSVGTNEKIQLSSLIA 327
>gi|194306571 replication factor C 5 isoform 2 [Homo sapiens]
Length = 319
Score = 210 bits (535), Expect = 1e-54
Identities = 122/314 (38%), Positives = 191/314 (60%), Gaps = 10/314 (3%)
Query: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
VEKYRP+ ++++ +++++ ++K + LP+LL YGPPGTGKTSTILA A++L+ +
Sbjct: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 61
Query: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQ 160
F VLELNASD+RGI ++R + +FA + FK+VILDEAD+MT AQ
Sbjct: 62 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-------FKLVILDEADAMTQDAQ 114
Query: 161 AALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENV 220
ALRR +EK ++ TRFCLICNY+S+II L SRC++FRF PL+ ++ RL + ++E V
Sbjct: 115 NALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKV 174
Query: 221 KISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAA 280
IS++G+ LV +S GD+R+A+ LQS T + GK +TE+ + G I +
Sbjct: 175 DISEDGMKALVTLSSGDMRRALNILQS-TNMAFGK-VTEETVYTCTGHPLKSDIANILDW 232
Query: 281 CQSGSFDKLEAVVKDLID-EGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLA 339
+ F + +L +G A ++ ++H V + + + K+A+++ L+
Sbjct: 233 MLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 292
Query: 340 DGADEHLQLISLCA 353
G +E +QL SL A
Sbjct: 293 VGTNEKIQLSSLIA 306
>gi|194306567 replication factor C 5 isoform 2 [Homo sapiens]
Length = 319
Score = 210 bits (535), Expect = 1e-54
Identities = 122/314 (38%), Positives = 191/314 (60%), Gaps = 10/314 (3%)
Query: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
VEKYRP+ ++++ +++++ ++K + LP+LL YGPPGTGKTSTILA A++L+ +
Sbjct: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 61
Query: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQ 160
F VLELNASD+RGI ++R + +FA + FK+VILDEAD+MT AQ
Sbjct: 62 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-------FKLVILDEADAMTQDAQ 114
Query: 161 AALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENV 220
ALRR +EK ++ TRFCLICNY+S+II L SRC++FRF PL+ ++ RL + ++E V
Sbjct: 115 NALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKV 174
Query: 221 KISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAA 280
IS++G+ LV +S GD+R+A+ LQS T + GK +TE+ + G I +
Sbjct: 175 DISEDGMKALVTLSSGDMRRALNILQS-TNMAFGK-VTEETVYTCTGHPLKSDIANILDW 232
Query: 281 CQSGSFDKLEAVVKDLID-EGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLA 339
+ F + +L +G A ++ ++H V + + + K+A+++ L+
Sbjct: 233 MLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 292
Query: 340 DGADEHLQLISLCA 353
G +E +QL SL A
Sbjct: 293 VGTNEKIQLSSLIA 306
>gi|31563534 replication factor C 2 isoform 1 [Homo sapiens]
Length = 354
Score = 199 bits (505), Expect = 4e-51
Identities = 124/334 (37%), Positives = 190/334 (56%), Gaps = 17/334 (5%)
Query: 27 GSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 86
GS+G + +PWVEKYRP ++E+ E+ V+ L+ ++PN++ GPPGTGKT+
Sbjct: 29 GSAGHYE----LPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 84
Query: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKI 146
+IL AR L GP L + +LELNAS++RGI VVR K+K FAQ V+ P KI
Sbjct: 85 SILCLARALLGPAL-KDAMLELNASNDRGIDVVRNKIKMFAQQKVT------LPKGRHKI 137
Query: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
+ILDEADSMT AQ ALRRTME SKTTRF L CN +IIEP+ SRC+ R+ L+D
Sbjct: 138 IILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQ 197
Query: 207 QQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTG--GKEITEKVITD 264
RL+++ +KE V +D+G+ ++ ++GD+R+A+ LQS G E KV +
Sbjct: 198 ILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDE 257
Query: 265 IAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQK 324
++ E I C + + D+ ++ L G++ ++ + V +++ K
Sbjct: 258 PHPLLVKEMIQ----HCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLK 313
Query: 325 SIITEKLAEVDKCLADGADEHLQLISLCATVMQQ 358
+++ +A+G + LQ+ L A + Q+
Sbjct: 314 LEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQK 347
>gi|194306569 replication factor C 5 isoform 3 [Homo sapiens]
Length = 255
Score = 152 bits (383), Expect = 6e-37
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 10/250 (4%)
Query: 105 VLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALR 164
VLELNASD+RGI ++R + +FA + FK+VILDEAD+MT AQ ALR
Sbjct: 2 VLELNASDDRGIDIIRGPILSFASTRTIFKKG-------FKLVILDEADAMTQDAQNALR 54
Query: 165 RTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISD 224
R +EK ++ TRFCLICNY+S+II L SRC++FRF PL+ ++ RL + ++E V IS+
Sbjct: 55 RVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISE 114
Query: 225 EGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSG 284
+G+ LV +S GD+R+A+ LQS T + GK +TE+ + G I + +
Sbjct: 115 DGMKALVTLSSGDMRRALNILQS-TNMAFGK-VTEETVYTCTGHPLKSDIANILDWMLNQ 172
Query: 285 SFDKLEAVVKDLID-EGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGAD 343
F + +L +G A ++ ++H V + + + K+A+++ L+ G +
Sbjct: 173 DFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTN 232
Query: 344 EHLQLISLCA 353
E +QL SL A
Sbjct: 233 EKIQLSSLIA 242
>gi|28882049 replication factor C 2 isoform 2 [Homo sapiens]
Length = 320
Score = 151 bits (381), Expect = 1e-36
Identities = 104/334 (31%), Positives = 166/334 (49%), Gaps = 51/334 (15%)
Query: 27 GSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 86
GS+G + +PWVEKYRP ++E+ E+ V+ L+ ++PN++ GPPGTGKT+
Sbjct: 29 GSAGHYE----LPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 84
Query: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKI 146
+IL AR L GP L + +LELNAS+
Sbjct: 85 SILCLARALLGPAL-KDAMLELNASN---------------------------------- 109
Query: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
DSMT AQ ALRRTME SKTTRF L CN +IIEP+ SRC+ R+ L+D
Sbjct: 110 ------DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQ 163
Query: 207 QQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTG--GKEITEKVITD 264
RL+++ +KE V +D+G+ ++ ++GD+R+A+ LQS G E KV +
Sbjct: 164 ILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDE 223
Query: 265 IAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQK 324
++ E I C + + D+ ++ L G++ ++ + V +++ K
Sbjct: 224 PHPLLVKEMIQ----HCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLK 279
Query: 325 SIITEKLAEVDKCLADGADEHLQLISLCATVMQQ 358
+++ +A+G + LQ+ L A + Q+
Sbjct: 280 LEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQK 313
>gi|108773789 replication factor C 3 isoform 2 [Homo sapiens]
Length = 305
Score = 113 bits (282), Expect = 3e-25
Identities = 77/233 (33%), Positives = 113/233 (48%), Gaps = 29/233 (12%)
Query: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
WV+KYRP + + + +E A L+ ++ D P+LL YGP G GK + I+ REL+G
Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 100 LFRLRV-----------------------LELNASDERGIQ--VVREKVKNFAQLTVSGS 134
+ +LR+ LE+N SD V++E +K AQ +
Sbjct: 64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLET 123
Query: 135 RSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRC 194
S FK+V+L E D +T AQ ALRRTMEK T R L CN S++I P+ SRC
Sbjct: 124 NSQRD----FKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 195 SKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQS 247
R S + L + KKE + + + L + S +LRKA+ ++
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEA 232
>gi|4506489 replication factor C 3 isoform 1 [Homo sapiens]
Length = 356
Score = 113 bits (282), Expect = 3e-25
Identities = 77/233 (33%), Positives = 113/233 (48%), Gaps = 29/233 (12%)
Query: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
WV+KYRP + + + +E A L+ ++ D P+LL YGP G GK + I+ REL+G
Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 100 LFRLRV-----------------------LELNASDERGIQ--VVREKVKNFAQLTVSGS 134
+ +LR+ LE+N SD V++E +K AQ +
Sbjct: 64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLET 123
Query: 135 RSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRC 194
S FK+V+L E D +T AQ ALRRTMEK T R L CN S++I P+ SRC
Sbjct: 124 NSQRD----FKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 195 SKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQS 247
R S + L + KKE + + + L + S +LRKA+ ++
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEA 232
>gi|32528306 replication factor C large subunit [Homo sapiens]
Length = 1147
Score = 51.6 bits (122), Expect = 1e-06
Identities = 61/250 (24%), Positives = 101/250 (40%), Gaps = 41/250 (16%)
Query: 26 AGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSL------------------- 66
A S ENK + + WV+KY+P + + Q+ + K L
Sbjct: 573 ADDSSENK-VENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAKF 631
Query: 67 -------EGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVV 119
+G+ L GPPG GKT+T +EL +ELNASD R +
Sbjct: 632 GKFSGKDDGSSFKAALLSGPPGVGKTTTASLVCQEL------GYSYVELNASDTRSKSSL 685
Query: 120 REKV-KNFAQLTVSGSRSDG--KPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRF 176
+ V ++ ++ G S+G +I+DE D M + + K T+
Sbjct: 686 KAIVAESLNNTSIKGFYSNGAASSVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKI 745
Query: 177 CLICNYVSR---IIEPLTSRCSKFRF-KPLSDKIQQQRLLDIAKKENVKISDEGIAYLVK 232
+IC R I L C RF +P ++I + ++ IA KE +KI + ++
Sbjct: 746 PIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQI-KGAMMSIAFKEGLKIPPPAMNEIIL 804
Query: 233 VSEGDLRKAI 242
+ D+R+ +
Sbjct: 805 GANQDIRQVL 814
>gi|27501458 CTF18, chromosome transmission fidelity factor 18
homolog [Homo sapiens]
Length = 975
Score = 45.4 bits (106), Expect = 8e-05
Identities = 59/250 (23%), Positives = 95/250 (38%), Gaps = 45/250 (18%)
Query: 31 ENKKAKPVPWVEKYRPKCVDEV-----AFQEEVVAVLKKSLEGADLPN---LLFYGPPGT 82
E KP P VE R + ++ + +L+ L+ + P L GPPG
Sbjct: 319 ERPSRKPRPSVEPARVSKEATAPGKWKSHEQVLEEMLEAGLDPSQRPKQKVALLCGPPGL 378
Query: 83 GKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCP 142
GKT+ AR V+E+NASD+R +V R +++ Q+ S + GKP
Sbjct: 379 GKTTLAHVIARHA------GYSVVEMNASDDRSPEVFRTRIEAATQME-SVLGAGGKP-- 429
Query: 143 PFKIVILDEADSMTSAAQAAL-------------------------RRTMEKESKTTRFC 177
+++DE D AA L RR E
Sbjct: 430 --NCLVIDEIDGAPVAAINVLLSILNRKGPQEVGPQGPAVPSGGGRRRRAEGGLLMRPII 487
Query: 178 LICN-YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEG 236
ICN + + L + F P QRL +++ ++ ++ +A L + ++
Sbjct: 488 CICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEKTDN 547
Query: 237 DLRKAITFLQ 246
D+R I LQ
Sbjct: 548 DIRACINTLQ 557
>gi|31377667 peroxisomal LON protease-like [Homo sapiens]
Length = 852
Score = 43.1 bits (100), Expect = 4e-04
Identities = 49/191 (25%), Positives = 94/191 (49%), Gaps = 22/191 (11%)
Query: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
+EK + + ++ +A ++ LK +L+G P L F GPPG GKTS + A+ L G E
Sbjct: 346 MEKLKKRVLEYLAVRQ-----LKNNLKG---PILCFVGPPGVGKTSVGRSVAKTL-GREF 396
Query: 101 FRLRVLEL-NASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAA 159
R+ + + + SD RG + R V + ++G ++ G P F +LDE D + +
Sbjct: 397 HRIALGGVCDQSDIRGHR--RTYVGSMPGRIINGLKTVGVNNPVF---LLDEVDKLGKSL 451
Query: 160 Q----AALRRTMEKESK---TTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLL 212
Q AAL ++ E T + + +S+++ T+ + L D+++ ++
Sbjct: 452 QGDPAAALLEVLDPEQNHNFTDHYLNVAFDLSQVLFIATANTTATIPAALLDRMEIIQVP 511
Query: 213 DIAKKENVKIS 223
++E ++I+
Sbjct: 512 GYTQEEKIEIA 522
>gi|19718796 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 39 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPN--------LLFYGPPGTGKTSTILA 90
PWV+KY+P+ E+A ++ + ++ L+ L LL GPPG GKT+T+
Sbjct: 79 PWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKI 138
Query: 91 AARE 94
++E
Sbjct: 139 LSKE 142
>gi|19718794 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 39 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPN--------LLFYGPPGTGKTSTILA 90
PWV+KY+P+ E+A ++ + ++ L+ L LL GPPG GKT+T+
Sbjct: 79 PWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKI 138
Query: 91 AARE 94
++E
Sbjct: 139 LSKE 142
>gi|19718792 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 39 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPN--------LLFYGPPGTGKTSTILA 90
PWV+KY+P+ E+A ++ + ++ L+ L LL GPPG GKT+T+
Sbjct: 79 PWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKI 138
Query: 91 AARE 94
++E
Sbjct: 139 LSKE 142
>gi|19718784 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 39 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPN--------LLFYGPPGTGKTSTILA 90
PWV+KY+P+ E+A ++ + ++ L+ L LL GPPG GKT+T+
Sbjct: 79 PWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKI 138
Query: 91 AARE 94
++E
Sbjct: 139 LSKE 142
>gi|4506383 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 39 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPN--------LLFYGPPGTGKTSTILA 90
PWV+KY+P+ E+A ++ + ++ L+ L LL GPPG GKT+T+
Sbjct: 79 PWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKI 138
Query: 91 AARE 94
++E
Sbjct: 139 LSKE 142
>gi|19718786 RAD17 homolog isoform 2 [Homo sapiens]
Length = 681
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 39 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPN--------LLFYGPPGTGKTSTILA 90
PWV+KY+P+ E+A ++ + ++ L+ L LL GPPG GKT+T+
Sbjct: 90 PWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKI 149
Query: 91 AARE 94
++E
Sbjct: 150 LSKE 153
>gi|195539395 proteasome 26S ATPase subunit 6 [Homo sapiens]
Length = 403
Score = 38.9 bits (89), Expect = 0.007
Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 41/194 (21%)
Query: 75 LFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDE---RGIQVVREKVKNFAQLTV 131
L YGPPGTGKT A A +L + L+V+ + D+ +++RE + N+A+
Sbjct: 185 LLYGPPGTGKTLLARAVASQL---DCNFLKVVSSSIVDKYIGESARLIRE-MFNYAR--- 237
Query: 132 SGSRSDGKPCPPFKIVILDEADSM--------TSAAQAALRRTMEKESKTTRF------- 176
D +PC I+ +DE D++ TSA + R ME ++ F
Sbjct: 238 -----DHQPC----IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVK 288
Query: 177 CLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEG-IAY--LVKV 233
++ ++P R + K D +Q LDI K I+ G I Y +VK+
Sbjct: 289 MIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKL 348
Query: 234 SEG----DLRKAIT 243
S+G DLR T
Sbjct: 349 SDGFNGADLRNVCT 362
>gi|219282747 KIAA1772 [Homo sapiens]
Length = 1923
Score = 37.4 bits (85), Expect = 0.021
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 40/165 (24%)
Query: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKSL---EGADLPN---------------LLFYGP 79
V WV RP +++ +E+ + + +L AD N LL GP
Sbjct: 1262 VAWVSSLRPLLNKDMSSEEQSLYYRQWTLARQHHADYSNQLDPASGTRNFHPRRLLLTGP 1321
Query: 80 PGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGK 139
P GKT + L R LF +R+LE++ DE I + +Q S+G+
Sbjct: 1322 PQVGKTGSYLQFLRILF---RMLIRLLEVDVYDEEEINTDHNESSEVSQ-------SEGE 1371
Query: 140 PCP--------PFKIVILDEADSMTSAAQ----AALRRTMEKESK 172
P P PF + + D S+ S A +++ + KESK
Sbjct: 1372 PWPDIESFSKMPFDVSVHDPKYSLMSLVYTEKLAGVKQEVIKESK 1416
>gi|18426904 Werner helicase interacting protein isoform 2 [Homo
sapiens]
Length = 640
Score = 37.0 bits (84), Expect = 0.028
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 39 PWVEKYRPKCVDEVAFQEEVVA---VLKKSLEGADLPNLLFYGPPGTGKTST--ILAAAR 93
P + RP + + Q + V +L+ LE ++P+L+ +GPPG GKT+ I+A+
Sbjct: 226 PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNS 285
Query: 94 ELFGPELFRLRVLELNASDERGIQVVREKVKNF 126
+ L +D R + + K+F
Sbjct: 286 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSF 318
>gi|18426902 Werner helicase interacting protein isoform 1 [Homo
sapiens]
Length = 665
Score = 37.0 bits (84), Expect = 0.028
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 39 PWVEKYRPKCVDEVAFQEEVVA---VLKKSLEGADLPNLLFYGPPGTGKTST--ILAAAR 93
P + RP + + Q + V +L+ LE ++P+L+ +GPPG GKT+ I+A+
Sbjct: 226 PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNS 285
Query: 94 ELFGPELFRLRVLELNASDERGIQVVREKVKNF 126
+ L +D R + + K+F
Sbjct: 286 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSF 318
>gi|6005942 valosin-containing protein [Homo sapiens]
Length = 806
Score = 35.4 bits (80), Expect = 0.080
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 45/188 (23%)
Query: 74 LLFYGPPGTGKTSTILAAARE-------LFGPELFRLRVLELNASDERGIQVVREKVKNF 126
+LFYGPPG GKT A A E + GPEL + E E ++ + +K +
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE----SEANVREIFDKARQA 569
Query: 127 AQLTVSGSRSDGKPCPPFKIVILDEADSMT-----------SAAQAALRRTMEK----ES 171
A PC ++ DE DS+ AA + + + + +
Sbjct: 570 A------------PC----VLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613
Query: 172 KTTRFCLICNYVSRIIEPL---TSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIA 228
K F + II+P R + + PL D+ + +L +++ D +
Sbjct: 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLE 673
Query: 229 YLVKVSEG 236
+L K++ G
Sbjct: 674 FLAKMTNG 681
Score = 30.8 bits (68), Expect = 2.0
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
Query: 74 LLFYGPPGTGKTSTILAAARE-------LFGPEL 100
+L YGPPGTGKT A A E + GPE+
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274
>gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens]
Length = 1844
Score = 34.7 bits (78), Expect = 0.14
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 74 LLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFA---QLT 130
+L GP G GKT+ + A A+EL ++ E+NAS +R + + ++K Q+
Sbjct: 1128 VLITGPTGVGKTAAVYACAQEL------GFKIFEVNASSQRSGRQILSQLKEATQSHQVD 1181
Query: 131 VSGSRSDGKPC 141
G S KPC
Sbjct: 1182 KQGVNSQ-KPC 1191
>gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens]
Length = 980
Score = 34.7 bits (78), Expect = 0.14
Identities = 42/158 (26%), Positives = 65/158 (41%), Gaps = 38/158 (24%)
Query: 14 PPLTKDRGVAASAGSSGENKK--AKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADL 71
P L +D G A + ++ A +P V + + EV ++E++ ++ LE +L
Sbjct: 673 PLLAEDFGQALEQLQTAHSQAVGAPKIPSVSWHDVGGLQEV--KKEILETIQLPLEHPEL 730
Query: 72 -------PNLLFYGPPGTGKTSTILAAARE-------LFGPELFRLRVLELNASDERGIQ 117
LL +GPPGTGKT A A E + GPEL + V E ++
Sbjct: 731 LSLGLRRSGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYV----GQSEENVR 786
Query: 118 VVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSM 155
V + + A PC I+ DE DS+
Sbjct: 787 EVFARARAAA------------PC----IIFFDELDSL 808
Score = 33.9 bits (76), Expect = 0.23
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 37 PVPWVEKYRPKCVDEV------AFQEEVVAVLKKSLE--GADLP---NLLFYGPPGTGKT 85
PVPW+ + A E+ AVLK L+ GA L ++L GPPG GKT
Sbjct: 418 PVPWLPSEESTLWSSLSPPGLEALVSELCAVLKPRLQPGGALLTGTSSVLLRGPPGCGKT 477
Query: 86 STILAAARELFGPELFRLRVLELNASDERGIQ 117
T++AAA G L ++ L A ++
Sbjct: 478 -TVVAAACSHLGLHLLKVPCSSLCAESSGAVE 508
>gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens]
Length = 750
Score = 34.3 bits (77), Expect = 0.18
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 27/89 (30%)
Query: 74 LLFYGPPGTGKTSTILAAARE-------LFGPELFRLRVLELNASDERGIQVVREKVKNF 126
+L GPPG GKT A A E + GPEL + V E ER ++ V ++ KN
Sbjct: 512 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGE----SERAVRQVFQRAKNS 567
Query: 127 AQLTVSGSRSDGKPCPPFKIVILDEADSM 155
A PC ++ DE D++
Sbjct: 568 A------------PC----VIFFDEVDAL 580
Score = 30.0 bits (66), Expect = 3.4
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 17/91 (18%)
Query: 74 LLFYGPPGTGKTSTILAAARELFGPELFRLRVLEL--NASDERGIQVVREKVKNFAQLTV 131
+L +GPPG GKT A A EL P + ++ E+ S E +K++ + V
Sbjct: 195 VLLHGPPGCGKTLLAHAIAGELDLP-ILKVAAPEIVSGVSGES-----EQKLRELFEQAV 248
Query: 132 SGSRSDGKPCPPFKIVILDEADSMTSAAQAA 162
S + PC I+ +DE D++T + A
Sbjct: 249 SNA-----PC----IIFIDEIDAITPKREVA 270
>gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens]
Length = 856
Score = 34.3 bits (77), Expect = 0.18
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 27/89 (30%)
Query: 74 LLFYGPPGTGKTSTILAAARE-------LFGPELFRLRVLELNASDERGIQVVREKVKNF 126
+L GPPG GKT A A E + GPEL + V E ER ++ V ++ KN
Sbjct: 618 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGE----SERAVRQVFQRAKNS 673
Query: 127 AQLTVSGSRSDGKPCPPFKIVILDEADSM 155
A PC ++ DE D++
Sbjct: 674 A------------PC----VIFFDEVDAL 686
Score = 30.0 bits (66), Expect = 3.4
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 17/91 (18%)
Query: 74 LLFYGPPGTGKTSTILAAARELFGPELFRLRVLEL--NASDERGIQVVREKVKNFAQLTV 131
+L +GPPG GKT A A EL P + ++ E+ S E +K++ + V
Sbjct: 301 VLLHGPPGCGKTLLAHAIAGELDLP-ILKVAAPEIVSGVSGES-----EQKLRELFEQAV 354
Query: 132 SGSRSDGKPCPPFKIVILDEADSMTSAAQAA 162
S + PC I+ +DE D++T + A
Sbjct: 355 SNA-----PC----IIFIDEIDAITPKREVA 376
>gi|21327685 YME1-like 1 isoform 1 [Homo sapiens]
Length = 773
Score = 33.9 bits (76), Expect = 0.23
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 18/105 (17%)
Query: 56 EEVVAVLKK----SLEGADLPN-LLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNA 110
+EVV LK ++ G LP +L GPPGTGKT A A E P + +
Sbjct: 352 QEVVEFLKNPQKFTILGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYY----ASGSE 407
Query: 111 SDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSM 155
DE + V +++N + + + PC ++ +DE DS+
Sbjct: 408 FDEMFVGVGASRIRNLFREAKANA-----PC----VIFIDELDSV 443
>gi|7657689 YME1-like 1 isoform 3 [Homo sapiens]
Length = 716
Score = 33.9 bits (76), Expect = 0.23
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 18/105 (17%)
Query: 56 EEVVAVLKK----SLEGADLPN-LLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNA 110
+EVV LK ++ G LP +L GPPGTGKT A A E P + +
Sbjct: 295 QEVVEFLKNPQKFTILGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYY----ASGSE 350
Query: 111 SDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSM 155
DE + V +++N + + + PC ++ +DE DS+
Sbjct: 351 FDEMFVGVGASRIRNLFREAKANA-----PC----VIFIDELDSV 386
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,911,479
Number of Sequences: 37866
Number of extensions: 533813
Number of successful extensions: 1781
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1683
Number of HSP's gapped (non-prelim): 119
length of query: 363
length of database: 18,247,518
effective HSP length: 104
effective length of query: 259
effective length of database: 14,309,454
effective search space: 3706148586
effective search space used: 3706148586
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.