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Search of human proteins with 4505089
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505089 microfibrillar associated protein 5 [Homo sapiens]
(173 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505089 microfibrillar associated protein 5 [Homo sapiens] 358 1e-99
gi|207028935 microfibrillar-associated protein 2 isoform b precu... 87 9e-18
gi|207028905 microfibrillar-associated protein 2 isoform b precu... 87 9e-18
gi|4505157 microfibrillar-associated protein 2 isoform a precurs... 87 9e-18
gi|9665259 microfibrillar-associated protein 2 isoform a precurs... 87 9e-18
gi|118200352 hypothetical protein LOC642273 [Homo sapiens] 29 1.8
gi|4557733 latent transforming growth factor beta binding protei... 28 4.0
gi|22027627 TNF receptor-associated factor 5 [Homo sapiens] 28 5.2
gi|77404348 TNF receptor-associated factor 5 [Homo sapiens] 28 5.2
gi|11321603 TNF receptor-associated factor 5 [Homo sapiens] 28 5.2
gi|33350932 cytoplasmic dynein 1 heavy chain 1 [Homo sapiens] 28 5.2
gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3 [... 27 8.8
gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1 [... 27 8.8
gi|54792780 DDHD domain containing 2 [Homo sapiens] 27 8.8
gi|148664201 cytoskeleton associated protein 2 isoform 2 [Homo s... 27 8.8
gi|148664244 cytoskeleton associated protein 2 isoform 1 [Homo s... 27 8.8
>gi|4505089 microfibrillar associated protein 5 [Homo sapiens]
Length = 173
Score = 358 bits (919), Expect = 1e-99
Identities = 173/173 (100%), Positives = 173/173 (100%)
Query: 1 MSLLGPKVLLFLAAFIITSDWIPLGVNSQRGDDVTQATPETFTEDPNLVNDPATDETVLA 60
MSLLGPKVLLFLAAFIITSDWIPLGVNSQRGDDVTQATPETFTEDPNLVNDPATDETVLA
Sbjct: 1 MSLLGPKVLLFLAAFIITSDWIPLGVNSQRGDDVTQATPETFTEDPNLVNDPATDETVLA 60
Query: 61 VLADIAPSTDDLASLSEKNTTAECWDEKFTCTRLYSVHRPVKQCIHQLCFTSLRRMYIVN 120
VLADIAPSTDDLASLSEKNTTAECWDEKFTCTRLYSVHRPVKQCIHQLCFTSLRRMYIVN
Sbjct: 61 VLADIAPSTDDLASLSEKNTTAECWDEKFTCTRLYSVHRPVKQCIHQLCFTSLRRMYIVN 120
Query: 121 KEICSRLVCKEHEAMKDELCRQMAGLPPRRLRRSNYFRLPPCENVDLQRPNGL 173
KEICSRLVCKEHEAMKDELCRQMAGLPPRRLRRSNYFRLPPCENVDLQRPNGL
Sbjct: 121 KEICSRLVCKEHEAMKDELCRQMAGLPPRRLRRSNYFRLPPCENVDLQRPNGL 173
>gi|207028935 microfibrillar-associated protein 2 isoform b
precursor [Homo sapiens]
Length = 182
Score = 86.7 bits (213), Expect = 9e-18
Identities = 33/59 (55%), Positives = 48/59 (81%)
Query: 83 ECWDEKFTCTRLYSVHRPVKQCIHQLCFTSLRRMYIVNKEICSRLVCKEHEAMKDELCR 141
+C +E++ CTRLYS+HRP KQC++++CF SLRR+Y++NKEIC R VC E ++ +LCR
Sbjct: 95 DCREEQYPCTRLYSIHRPCKQCLNEVCFYSLRRVYVINKEICVRTVCAHEELLRADLCR 153
>gi|207028905 microfibrillar-associated protein 2 isoform b
precursor [Homo sapiens]
Length = 182
Score = 86.7 bits (213), Expect = 9e-18
Identities = 33/59 (55%), Positives = 48/59 (81%)
Query: 83 ECWDEKFTCTRLYSVHRPVKQCIHQLCFTSLRRMYIVNKEICSRLVCKEHEAMKDELCR 141
+C +E++ CTRLYS+HRP KQC++++CF SLRR+Y++NKEIC R VC E ++ +LCR
Sbjct: 95 DCREEQYPCTRLYSIHRPCKQCLNEVCFYSLRRVYVINKEICVRTVCAHEELLRADLCR 153
>gi|4505157 microfibrillar-associated protein 2 isoform a precursor
[Homo sapiens]
Length = 183
Score = 86.7 bits (213), Expect = 9e-18
Identities = 33/59 (55%), Positives = 48/59 (81%)
Query: 83 ECWDEKFTCTRLYSVHRPVKQCIHQLCFTSLRRMYIVNKEICSRLVCKEHEAMKDELCR 141
+C +E++ CTRLYS+HRP KQC++++CF SLRR+Y++NKEIC R VC E ++ +LCR
Sbjct: 96 DCREEQYPCTRLYSIHRPCKQCLNEVCFYSLRRVYVINKEICVRTVCAHEELLRADLCR 154
>gi|9665259 microfibrillar-associated protein 2 isoform a precursor
[Homo sapiens]
Length = 183
Score = 86.7 bits (213), Expect = 9e-18
Identities = 33/59 (55%), Positives = 48/59 (81%)
Query: 83 ECWDEKFTCTRLYSVHRPVKQCIHQLCFTSLRRMYIVNKEICSRLVCKEHEAMKDELCR 141
+C +E++ CTRLYS+HRP KQC++++CF SLRR+Y++NKEIC R VC E ++ +LCR
Sbjct: 96 DCREEQYPCTRLYSIHRPCKQCLNEVCFYSLRRVYVINKEICVRTVCAHEELLRADLCR 154
>gi|118200352 hypothetical protein LOC642273 [Homo sapiens]
Length = 321
Score = 29.3 bits (64), Expect = 1.8
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 31 GDDVTQATPETFTEDPNLVNDPATDETVLAVLADIAPST 69
GD+ PET P DPAT ET APS+
Sbjct: 141 GDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPSS 179
>gi|4557733 latent transforming growth factor beta binding protein 2
[Homo sapiens]
Length = 1821
Score = 28.1 bits (61), Expect = 4.0
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 16 IITSDWIPLGVNSQRGDDVTQATPETFTEDP-----NLVNDPATDETVLAVLAD-IAPST 69
++T W+ G +GD + T P N P ++ + + + + PST
Sbjct: 775 VVTDTWLEAGTIPDKGDSQAGQVTTSVTHAPAWVTGNATTPPMPEQGIAEIQEEQVTPST 834
Query: 70 DDLASLS 76
D L +LS
Sbjct: 835 DVLVTLS 841
>gi|22027627 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 27.7 bits (60), Expect = 5.2
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 86 DEKFTCTRLYSV-HRPVKQ-CIH---QLCFTSLRRMYIVNKEICSRLVCKEHEAMKDELC 140
+E++ C +SV H P + C H Q C SLR + V + V K E KD C
Sbjct: 40 EERYKCAFCHSVLHNPHQTGCGHRFCQHCILSLRELNTVPICPVDKEVIKSQEVFKDNCC 99
Query: 141 RQ 142
++
Sbjct: 100 KR 101
>gi|77404348 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 27.7 bits (60), Expect = 5.2
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 86 DEKFTCTRLYSV-HRPVKQ-CIH---QLCFTSLRRMYIVNKEICSRLVCKEHEAMKDELC 140
+E++ C +SV H P + C H Q C SLR + V + V K E KD C
Sbjct: 40 EERYKCAFCHSVLHNPHQTGCGHRFCQHCILSLRELNTVPICPVDKEVIKSQEVFKDNCC 99
Query: 141 RQ 142
++
Sbjct: 100 KR 101
>gi|11321603 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 27.7 bits (60), Expect = 5.2
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 86 DEKFTCTRLYSV-HRPVKQ-CIH---QLCFTSLRRMYIVNKEICSRLVCKEHEAMKDELC 140
+E++ C +SV H P + C H Q C SLR + V + V K E KD C
Sbjct: 40 EERYKCAFCHSVLHNPHQTGCGHRFCQHCILSLRELNTVPICPVDKEVIKSQEVFKDNCC 99
Query: 141 RQ 142
++
Sbjct: 100 KR 101
>gi|33350932 cytoplasmic dynein 1 heavy chain 1 [Homo sapiens]
Length = 4646
Score = 27.7 bits (60), Expect = 5.2
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 7 KVLLFLAAFIITSD-WIPLGVNSQRGDDVTQATPETFTEDPNL 48
K+ +++ I+ D + LG++S+ G++V TP + TE P +
Sbjct: 1656 KMFAGVSSIILNEDNSVVLGISSREGEEVMFKTPVSITEHPKI 1698
>gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3
[Homo sapiens]
Length = 650
Score = 26.9 bits (58), Expect = 8.8
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 34 VTQATPETFTEDPNLVNDPATDETVLAVLADIAPSTDDLASLSEKNTTAECWDEKFTCTR 93
+T PE+F+ V+ VL P ++ S ++KN + + WD K T +R
Sbjct: 176 MTPTQPESFSSGSQDVHQKR-------VLLLTVPGMEETTSEADKNLSKQAWDTKKTGSR 228
Query: 94 LYSVHRP 100
S P
Sbjct: 229 PKSCEVP 235
>gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1
[Homo sapiens]
Length = 634
Score = 26.9 bits (58), Expect = 8.8
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 34 VTQATPETFTEDPNLVNDPATDETVLAVLADIAPSTDDLASLSEKNTTAECWDEKFTCTR 93
+T PE+F+ V+ VL P ++ S ++KN + + WD K T +R
Sbjct: 160 MTPTQPESFSSGSQDVHQKR-------VLLLTVPGMEETTSEADKNLSKQAWDTKKTGSR 212
Query: 94 LYSVHRP 100
S P
Sbjct: 213 PKSCEVP 219
>gi|54792780 DDHD domain containing 2 [Homo sapiens]
Length = 711
Score = 26.9 bits (58), Expect = 8.8
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 35 TQATPETFTEDPNLVNDPATDETVLAVLADIAP 67
T+A PE+ +E P+ VN T+ET +AV ++ P
Sbjct: 618 TEAEPESTSEKPSDVN---TEETSVAVKEEVLP 647
>gi|148664201 cytoskeleton associated protein 2 isoform 2 [Homo
sapiens]
Length = 683
Score = 26.9 bits (58), Expect = 8.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 35 TQATPETFTEDPNLVNDPATDETVLAVLADIAPSTDDLASL 75
T+ TF+E NL+N+ E +L L D+ + D L
Sbjct: 420 TEKVNNTFSECLNLINEGCPKEDILVTLNDLIKNIPDAKKL 460
>gi|148664244 cytoskeleton associated protein 2 isoform 1 [Homo
sapiens]
Length = 682
Score = 26.9 bits (58), Expect = 8.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 35 TQATPETFTEDPNLVNDPATDETVLAVLADIAPSTDDLASL 75
T+ TF+E NL+N+ E +L L D+ + D L
Sbjct: 419 TEKVNNTFSECLNLINEGCPKEDILVTLNDLIKNIPDAKKL 459
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,252,178
Number of Sequences: 37866
Number of extensions: 312354
Number of successful extensions: 573
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 564
Number of HSP's gapped (non-prelim): 16
length of query: 173
length of database: 18,247,518
effective HSP length: 95
effective length of query: 78
effective length of database: 14,650,248
effective search space: 1142719344
effective search space used: 1142719344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.