Guide to the Human Genome
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Name: ITGA2 Sequence: fasta or formatted (1181aa) NCBI GI: 116295258
Description:

integrin alpha 2 precursor

Referenced in:

Integrins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         79           3
 C cysteine            1.9         22           2
 D aspartate           5.1         60           1
 E glutamate           5.2         61           2
 F phenylalanine       4.8         57           2
 G glycine             7.5         88           2
 H histidine           1.4         17           1
 I isoleucine          7.1         84           2
 K lysine              4.9         58           2
 L leucine             8.3         98           4
 M methionine          1.8         21           1
 N asparagine          6.4         75           2
 P proline             4.0         47           1
 Q glutamine           5.3         63           2
 R arginine            2.7         32           2
 S serine              8.6        102           3
 T threonine           6.7         79           2
 V valine              7.5         89           4
 W tryptophan          0.8          9           1
 Y tyrosine            3.4         40           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   integrin alpha 2 precursor 
ITGA1                 0.350   integrin, alpha 1 precursor 
ITGA11                0.293   integrin, alpha 11 precursor 
ITGA10                0.272   integrin, alpha 10 precursor 
ITGAM                 0.150   integrin alpha M isoform 1 precursor 
ITGAM                 0.149   integrin alpha M isoform 2 precursor 
ITGAX                 0.149   integrin alpha X precursor 
ITGAD                 0.135   integrin, alpha D precursor 
ITGAL                 0.132   integrin alpha L isoform a precursor 
ITGAE                 0.118   integrin, alpha E precursor 
ITGAL                 0.113   integrin alpha L isoform b precursor 
ITGA8                 0.085   integrin, alpha 8 
ITGA9                 0.082   integrin, alpha 9 precursor 
ITGA6                 0.077   integrin alpha chain, alpha 6 isoform a precursor [...
ITGA6                 0.077   integrin alpha chain, alpha 6 isoform b precursor [...
ITGA5                 0.076   integrin alpha 5 precursor 
ITGA4                 0.076   integrin alpha 4 precursor 
ITGAV                 0.075   integrin alpha-V isoform 2 
ITGAV                 0.075   integrin alpha-V isoform 1 precursor 
ITGAV                 0.070   integrin alpha-V isoform 3 precursor 
ITGA3                 0.063   integrin alpha 3 isoform a precursor 
ITGA2B                0.062   integrin alpha 2b preproprotein 
ITGA3                 0.061   integrin alpha 3 isoform b precursor 
ITGA7                 0.053   integrin alpha 7 isoform 2 precursor 
ITGA7                 0.052   integrin alpha 7 isoform 3 
ITGA7                 0.052   integrin alpha 7 isoform 1 precursor 
COL14A1               0.028   collagen, type XIV, alpha 1 
COL12A1               0.026   collagen, type XII, alpha 1 long isoform precursor [...
COL21A1               0.024   collagen, type XXI, alpha 1 precursor 
COL12A1               0.024   collagen, type XII, alpha 1 short isoform precursor ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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