Search of human proteins with 4504597

Search of human proteins with 4504597

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4504597 interferon, alpha 5 [Homo sapiens]
         (189 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4504597 interferon, alpha 5 [Homo sapiens]                         381   e-106
gi|169791013 interferon, alpha 21 [Homo sapiens]                      333   7e-92
gi|170763491 interferon, alpha 14 [Homo sapiens]                      330   6e-91
gi|11128015 interferon, alpha 6 [Homo sapiens]                        327   4e-90
gi|194394174 interferon, alpha 13 precursor [Homo sapiens]            325   2e-89
gi|10835103 interferon, alpha 4 [Homo sapiens]                        324   3e-89
gi|13128950 interferon, alpha 1 [Homo sapiens]                        323   5e-89
gi|10880985 interferon, alpha 17 [Homo sapiens]                       320   4e-88
gi|4504589 interferon, alpha 10 [Homo sapiens]                        320   5e-88
gi|11067751 interferon, alpha 2 [Homo sapiens]                        315   1e-86
gi|4504593 interferon, alpha 16 [Homo sapiens]                        314   3e-86
gi|71143135 interferon, alpha 7 [Homo sapiens]                        310   4e-85
gi|42476083 interferon, alpha 8 [Homo sapiens]                        304   3e-83
gi|4504605 interferon, omega 1 [Homo sapiens]                         214   3e-56
gi|28882045 interferon, epsilon [Homo sapiens]                        102   2e-22
gi|4504603 interferon, beta 1, fibroblast [Homo sapiens]              100   6e-22
gi|112789564 interferon kappa precursor [Homo sapiens]                 78   5e-15
gi|118498354 component of oligomeric golgi complex 4 [Homo sapiens]    28   3.6  
gi|4557463 nicotinic acetylcholine receptor epsilon polypeptide ...    28   4.7  

>gi|4504597 interferon, alpha 5 [Homo sapiens]
          Length = 189

 Score =  381 bits (978), Expect = e-106
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60
           MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
Sbjct: 1   MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120
           FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
Sbjct: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120

Query: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180
           ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
Sbjct: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180

Query: 181 LQERLRRKE 189
           LQERLRRKE
Sbjct: 181 LQERLRRKE 189


>gi|169791013 interferon, alpha 21 [Homo sapiens]
          Length = 189

 Score =  333 bits (853), Expect = 7e-92
 Identities = 164/189 (86%), Positives = 178/189 (94%)

Query: 1   MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60
           MAL F LLMA++VL+ KSICSLGCDLPQTHSL NRR L+++AQMGRISPFSCLKDRHDFG
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120
           FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATW+++LL+KF TEL QQLNDLE
Sbjct: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120

Query: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180
           AC++QEVGVE+TPLMNVDSIL V+KYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLS  
Sbjct: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180

Query: 181 LQERLRRKE 189
            QERLRRKE
Sbjct: 181 FQERLRRKE 189


>gi|170763491 interferon, alpha 14 [Homo sapiens]
          Length = 189

 Score =  330 bits (845), Expect = 6e-91
 Identities = 160/189 (84%), Positives = 176/189 (93%)

Query: 1   MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60
           MALPF L+MALVVL+CKS CSLGC+L QTHSL+NRRTLM+MAQM RISPFSCLKDRHDF 
Sbjct: 1   MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120
           FPQEEFDGNQFQKAQAISVLHEM+QQTFNLFSTK+SSA WDETLL+KFY EL+QQ+NDLE
Sbjct: 61  FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120

Query: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180
           AC++QEVGVE+TPLMN DSIL V+KYFQRITLYL EKKYSPCAWEVVRAEIMRS S S N
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 181 LQERLRRKE 189
           LQ+RLRRK+
Sbjct: 181 LQKRLRRKD 189


>gi|11128015 interferon, alpha 6 [Homo sapiens]
          Length = 189

 Score =  327 bits (838), Expect = 4e-90
 Identities = 163/189 (86%), Positives = 171/189 (90%)

Query: 1   MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60
           MALPF LLMALVVL+CKS CSL CDLPQTHSL +RRT+M++AQM RIS FSCLKDRHDF 
Sbjct: 1   MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120
           FPQEEFDGNQFQKA+AISVLHE+IQQTFNLFSTKDSS  WDE LLDK YTELYQQLNDLE
Sbjct: 61  FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120

Query: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180
           AC+MQEV V  TPLMN DSIL VRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFS S N
Sbjct: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180

Query: 181 LQERLRRKE 189
           LQERLRRKE
Sbjct: 181 LQERLRRKE 189


>gi|194394174 interferon, alpha 13 precursor [Homo sapiens]
          Length = 190

 Score =  325 bits (832), Expect = 2e-89
 Identities = 160/189 (84%), Positives = 170/189 (89%)

Query: 1   MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60
           MA PF LLMALVVL+CKS CSLGCDLP+THSL NRRTLM++AQM RISP SCL DRHDFG
Sbjct: 2   MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61

Query: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120
           FPQEEFDGNQFQKA AISVLHE+IQQ FNLF+TKDSSA WDE LLDKF TELYQQLNDLE
Sbjct: 62  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121

Query: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180
           AC+MQE  V +TPLMN DSIL V+KYF+RITLYLTEKKYSPCAWEVVRAEIMRS SLS N
Sbjct: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181

Query: 181 LQERLRRKE 189
           LQERLRRKE
Sbjct: 182 LQERLRRKE 190


>gi|10835103 interferon, alpha 4 [Homo sapiens]
          Length = 189

 Score =  324 bits (830), Expect = 3e-89
 Identities = 158/189 (83%), Positives = 176/189 (93%)

Query: 1   MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60
           MAL F LLMA++VL+ KSICSLGCDLPQTHSL NRR L+++AQMGRIS FSCLKDRHDFG
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120
           FP+EEFDG+QFQKAQAISVLHEMIQQTFNLFST+DSSA W+++LL+KF TELYQQLNDLE
Sbjct: 61  FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120

Query: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180
           AC++QEVGVE+TPLMN DSIL VRKYFQRITLYLTEKKYSPCAWEVVRAEIMRS S S N
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 181 LQERLRRKE 189
           LQ+RLRRK+
Sbjct: 181 LQKRLRRKD 189


>gi|13128950 interferon, alpha 1 [Homo sapiens]
          Length = 189

 Score =  323 bits (828), Expect = 5e-89
 Identities = 159/189 (84%), Positives = 169/189 (89%)

Query: 1   MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60
           MA PF LLM LVVL+CKS CSLGCDLP+THSL NRRTLM++AQM RISP SCL DRHDFG
Sbjct: 1   MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120
           FPQEEFDGNQFQKA AISVLHE+IQQ FNLF+TKDSSA WDE LLDKF TELYQQLNDLE
Sbjct: 61  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 120

Query: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180
           AC+MQE  V +TPLMN DSIL V+KYF+RITLYLTEKKYSPCAWEVVRAEIMRS SLS N
Sbjct: 121 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 180

Query: 181 LQERLRRKE 189
           LQERLRRKE
Sbjct: 181 LQERLRRKE 189


>gi|10880985 interferon, alpha 17 [Homo sapiens]
          Length = 189

 Score =  320 bits (821), Expect = 4e-88
 Identities = 156/189 (82%), Positives = 174/189 (92%)

Query: 1   MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60
           MAL F LLMA++VL+ KSICSLGCDLPQTHSL NRR L+++AQMGRISPFSCLKDRHDFG
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120
            PQEEFDGNQFQK QAISVLHEMIQQTFNLFST+DSSA W+++LL+KF TELYQQLN+LE
Sbjct: 61  LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120

Query: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180
           AC++QEVG+E+TPLMN DSIL VRKYFQRITLYLTEKKYSPCAWEVVRAEIMRS S S N
Sbjct: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 181 LQERLRRKE 189
           LQ+ LRRK+
Sbjct: 181 LQKILRRKD 189


>gi|4504589 interferon, alpha 10 [Homo sapiens]
          Length = 189

 Score =  320 bits (820), Expect = 5e-88
 Identities = 156/189 (82%), Positives = 173/189 (91%)

Query: 1   MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60
           MAL F LLMA++VL+ KSICSLGCDLPQTHSL NRR L+++ QMGRISPFSCLKDRHDF 
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120
            PQEEFDGNQFQKAQAISVLHEMIQQTFNLFST+DSSA W+++LL+KF TELYQQLNDLE
Sbjct: 61  IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120

Query: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180
           AC++QEVGVE+TPLMN DSIL VRKYFQRITLYL E+KYSPCAWEVVRAEIMRS S S N
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 181 LQERLRRKE 189
           LQ+RLRRK+
Sbjct: 181 LQKRLRRKD 189


>gi|11067751 interferon, alpha 2 [Homo sapiens]
          Length = 188

 Score =  315 bits (808), Expect = 1e-86
 Identities = 158/189 (83%), Positives = 169/189 (89%), Gaps = 1/189 (0%)

Query: 1   MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60
           MAL F LL+AL+VL+CKS CS+GCDLPQTHSL +RRTLM++AQM RIS FSCLKDRHDFG
Sbjct: 1   MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120
           FPQEEF GNQFQKA+ I VLHEMIQQ FNLFSTKDSSA WDETLLDKFYTELYQQLNDLE
Sbjct: 61  FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119

Query: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180
           AC++Q VGV +TPLM  DSIL VRKYFQRITLYL EKKYSPCAWEVVRAEIMRSFSLS N
Sbjct: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179

Query: 181 LQERLRRKE 189
           LQE LR KE
Sbjct: 180 LQESLRSKE 188


>gi|4504593 interferon, alpha 16 [Homo sapiens]
          Length = 189

 Score =  314 bits (805), Expect = 3e-86
 Identities = 156/189 (82%), Positives = 168/189 (88%)

Query: 1   MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60
           MAL F LLMA++VL+ KSICSLGCDLPQTHSL NRR L+++AQMGRIS FSCLKDR+DFG
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120
           FPQE FDGNQFQKAQAIS  HEMIQQTFNLFSTKDSSA WDETLLDKFY EL+QQLNDLE
Sbjct: 61  FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120

Query: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180
           AC+ QEVGVE+  LMN DSIL VRKYFQRITLYL  KKYSPCAWEVVRAEIMRSFS S N
Sbjct: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180

Query: 181 LQERLRRKE 189
           LQ+ LRRK+
Sbjct: 181 LQKGLRRKD 189


>gi|71143135 interferon, alpha 7 [Homo sapiens]
          Length = 189

 Score =  310 bits (795), Expect = 4e-85
 Identities = 151/189 (79%), Positives = 171/189 (90%)

Query: 1   MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60
           MA  F LLM ++VL+ KSICSLGCDLPQTHSL NRR L+++AQMGRISPFSCLKDRH+F 
Sbjct: 1   MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120
           FP+EEFDG+QFQK QAISVLHEMIQQTFNLFST+DSSA W+++LL+KF TELYQQLNDLE
Sbjct: 61  FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120

Query: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180
           AC++QEVGVE+TPLMN D IL VRKYFQRITLYL EKKYSPCAWEVVRAEIMRSFS S N
Sbjct: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180

Query: 181 LQERLRRKE 189
           L++ LRRK+
Sbjct: 181 LKKGLRRKD 189


>gi|42476083 interferon, alpha 8 [Homo sapiens]
          Length = 189

 Score =  304 bits (778), Expect = 3e-83
 Identities = 155/189 (82%), Positives = 167/189 (88%)

Query: 1   MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60
           MAL F LL+ALVVL+ KS  SLGCDLPQTHSL NRR L+++AQM RISPFSCLKDRHDF 
Sbjct: 1   MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120
           FPQEEFD  QFQKAQAISVLHEMIQQTFNLFSTKDSSA  DETLLD+FY EL QQLNDLE
Sbjct: 61  FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120

Query: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180
           +C+MQEVGV ++PLM  DSIL VRKYFQRITLYLTEKKYS CAWEVVRAEIMRSFSLS N
Sbjct: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180

Query: 181 LQERLRRKE 189
           LQ+RL+ KE
Sbjct: 181 LQKRLKSKE 189


>gi|4504605 interferon, omega 1 [Homo sapiens]
          Length = 195

 Score =  214 bits (546), Expect = 3e-56
 Identities = 110/189 (58%), Positives = 136/189 (71%)

Query: 1   MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60
           MAL F LL ALV+ +   + SLGCDLPQ H L +R TL+++ QM RISPF CLKDR DF 
Sbjct: 1   MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120
           FPQE   G+Q QKA  +SVLHEM+QQ F+LF T+ SSA W+ TLLD+ +T L+QQL  LE
Sbjct: 61  FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120

Query: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180
            C++Q VG  ++        LT+R+YFQ I +YL EKKYS CAWEVVR EIM+S  LS N
Sbjct: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180

Query: 181 LQERLRRKE 189
           +QERLR K+
Sbjct: 181 MQERLRSKD 189


>gi|28882045 interferon, epsilon [Homo sapiens]
          Length = 208

 Score =  102 bits (255), Expect = 2e-22
 Identities = 56/155 (36%), Positives = 86/155 (55%)

Query: 34  NRRTLMIMAQMGRISPFSCLKDRHDFGFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFST 93
           N+ +L ++ ++  +S   CL  R +F  PQ+     Q+QK   +++LHEM+QQ F+LF  
Sbjct: 35  NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94

Query: 94  KDSSATWDETLLDKFYTELYQQLNDLEACMMQEVGVEDTPLMNVDSILTVRKYFQRITLY 153
             S   W+E   +KF  +L+QQL  LEA M  E       L + +  L V+ YF+RI  Y
Sbjct: 95  NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDY 154

Query: 154 LTEKKYSPCAWEVVRAEIMRSFSLSANLQERLRRK 188
           L  + YS CAW +V+ EI R      +L E+L ++
Sbjct: 155 LENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189


>gi|4504603 interferon, beta 1, fibroblast [Homo sapiens]
          Length = 187

 Score =  100 bits (250), Expect = 6e-22
 Identities = 51/135 (37%), Positives = 77/135 (57%)

Query: 52  CLKDRHDFGFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTE 111
           CLKDR +F  P+E     QFQK  A   ++EM+Q  F +F    SS  W+ET+++     
Sbjct: 52  CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111

Query: 112 LYQQLNDLEACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEI 171
           +Y Q+N L+  + +++  ED     + S L +++Y+ RI  YL  K+YS CAW +VR EI
Sbjct: 112 VYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEI 171

Query: 172 MRSFSLSANLQERLR 186
           +R+F     L   LR
Sbjct: 172 LRNFYFINRLTGYLR 186


>gi|112789564 interferon kappa precursor [Homo sapiens]
          Length = 207

 Score = 77.8 bits (190), Expect = 5e-15
 Identities = 59/182 (32%), Positives = 78/182 (42%), Gaps = 15/182 (8%)

Query: 21  SLGCDLPQTHSLS-NRRTLMIMAQMGRISPFSCLKDRHDFGFPQEEFDGNQFQKAQAISV 79
           SL C+L   H      + L  ++ M    P  CL++   F  PQE     Q  K      
Sbjct: 27  SLDCNLLNVHLRRVTWQNLRHLSSMSNSFPVECLRENIAFELPQEFLQYTQPMKRDIKKA 86

Query: 80  LHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLEACMMQEVGV-EDTPLMNVD 138
            +EM  Q FN+FS + +   W E  L +    L QQ   L  C+ ++    ED   M  +
Sbjct: 87  FYEMSLQAFNIFS-QHTFKYWKERHLKQIQIGLDQQAEYLNQCLEEDKNENEDMKEMKEN 145

Query: 139 ------------SILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSANLQERLR 186
                       S L +R+YF RI  +L EKKYS CAWE+VR EI R            R
Sbjct: 146 EMKPSEARVPQLSSLELRRYFHRIDNFLKEKKYSDCAWEIVRVEIRRCLYYFYKFTALFR 205

Query: 187 RK 188
           RK
Sbjct: 206 RK 207


>gi|118498354 component of oligomeric golgi complex 4 [Homo sapiens]
          Length = 789

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 60  GFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDL 119
           GFP   F   Q     A++++H  +QQ    F TK   +T DE  +    T     LN++
Sbjct: 504 GFPATTFQDIQRGVTSAVNIMHSSLQQ--GKFDTKGIEST-DEAKMSFLVT-----LNNV 555

Query: 120 EAC 122
           E C
Sbjct: 556 EVC 558


>gi|4557463 nicotinic acetylcholine receptor epsilon polypeptide
           precursor [Homo sapiens]
          Length = 493

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   LPFVLLMA-LVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRI 47
           L FV+++A L+V+NC  + ++    P TH++S R   +++  + R+
Sbjct: 308 LIFVMVVATLIVMNCVIVLNVSQRTPTTHAMSPRLRHVLLELLPRL 353


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,364,614
Number of Sequences: 37866
Number of extensions: 244310
Number of successful extensions: 650
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 19
length of query: 189
length of database: 18,247,518
effective HSP length: 96
effective length of query: 93
effective length of database: 14,612,382
effective search space: 1358951526
effective search space used: 1358951526
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.