Guide to the Human Genome
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Name: PDDC1 Sequence: fasta or formatted (220aa) NCBI GI: 32699045
Description:

Parkinson disease 7 domain containing 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.6         30           2
 C cysteine            4.1          9           2
 D aspartate           4.5         10           1
 E glutamate           4.5         10           1
 F phenylalanine       5.0         11           1
 G glycine             6.4         14           2
 H histidine           3.2          7           1
 I isoleucine          1.8          4           1
 K lysine              2.7          6           1
 L leucine            10.5         23           2
 M methionine          1.4          3           1
 N asparagine          2.7          6           1
 P proline             5.5         12           1
 Q glutamine           2.7          6           1
 R arginine            5.0         11           1
 S serine             10.9         24           2
 T threonine           4.1          9           1
 V valine              9.1         20           2
 W tryptophan          0.9          2           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Parkinson disease 7 domain containing 1 
LOC100294349          0.995   PREDICTED: similar to Parkinson disease 7 domain co...
LOC100294349          0.778   PREDICTED: similar to Parkinson disease 7 domain co...
GCNT2                 0.012   glucosaminyl (N-acetyl) transferase 2, I-branching en...
GCNT2                 0.012   glucosaminyl (N-acetyl) transferase 2, I-branching e...
CACNA2D2              0.012   calcium channel, voltage-dependent, alpha 2/delta su...
KIAA1305              0.012   hypothetical protein LOC57523 
NSMCE4A               0.007   non-SMC element 4 homolog A 
HOXB2                 0.007   homeobox B2 
CACNA2D2              0.007   calcium channel, voltage-dependent, alpha 2/delta su...
TBC1D9B               0.007   TBC1 domain family, member 9B (with GRAM domain) iso...
TBC1D9B               0.007   TBC1 domain family, member 9B (with GRAM domain) iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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