Guide to the Human Genome
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Name: FHIT Sequence: fasta or formatted (147aa) NCBI GI: 4503719
Description:

fragile histidine triad gene

Referenced in:

Gene Structure
Nucleotide Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         10           3
 C cysteine            0.7          1           1
 D aspartate           5.4          8           1
 E glutamate           8.2         12           3
 F phenylalanine       7.5         11           1
 G glycine             4.8          7           1
 H histidine           6.8         10           1
 I isoleucine          1.4          2           1
 K lysine              5.4          8           1
 L leucine             8.2         12           1
 M methionine          2.0          3           1
 N asparagine          1.4          2           1
 P proline             6.1          9           1
 Q glutamine           4.8          7           1
 R arginine            6.8         10           1
 S serine              5.4          8           1
 T threonine           4.8          7           2
 V valine             11.6         17           2
 W tryptophan          0.7          1           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fragile histidine triad gene 
HINT2                 0.032   PKCI-1-related HIT protein 
HINT1                 0.029   histidine triad nucleotide binding protein 1 
HINT3                 0.018   histidine triad nucleotide binding protein 3 
CAST                  0.014   calpastatin isoform k 
CAST                  0.014   calpastatin isoform h 
CAST                  0.014   calpastatin isoform e 
CAST                  0.014   calpastatin isoform b 
CAST                  0.014   calpastatin isoform i 
CAST                  0.014   calpastatin isoform a 
JARID2                0.011   jumonji, AT rich interactive domain 2 protein 
CCDC55                0.011   coiled-coil domain containing 55 isoform 1 
TADA2L                0.011   transcriptional adaptor 2-like isoform a 
TADA2L                0.007   transcriptional adaptor 2-like isoform b 
LOC652147             0.007   PREDICTED: similar to U5 snRNP-specific 200kD prote...
SNRNP200              0.007   activating signal cointegrator 1 complex subunit 3-l...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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