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Search of human proteins with 4503659
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4503659 ubiquitin-like protein fubi and ribosomal protein
S30 precursor [Homo sapiens]
(133 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30... 262 7e-71
gi|239750097 PREDICTED: hypothetical protein XP_002347291 [Homo ... 117 2e-27
gi|239755591 PREDICTED: similar to Putative ubiquitin-like prote... 117 3e-27
gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens] 55 2e-08
gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens] 55 2e-08
gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens] 55 2e-08
gi|208022622 ubiquitin and ribosomal protein S27a precursor [Hom... 55 2e-08
gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo ... 55 2e-08
gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo s... 52 1e-07
gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo ... 52 1e-07
gi|11024714 ubiquitin B precursor [Homo sapiens] 50 7e-07
gi|67191208 ubiquitin C [Homo sapiens] 50 7e-07
gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens] 46 8e-06
gi|222352096 ubiquitin D [Homo sapiens] 40 4e-04
gi|169790971 parkin isoform 2 [Homo sapiens] 35 0.018
gi|169790969 parkin isoform 1 [Homo sapiens] 35 0.018
gi|8567418 ubiquilin 3 [Homo sapiens] 35 0.023
gi|190341072 AN1, ubiquitin-like, homolog [Homo sapiens] 33 0.087
gi|190341070 AN1, ubiquitin-like, homolog [Homo sapiens] 33 0.087
gi|41352712 inhibitor of nuclear factor kappa B kinase beta subu... 32 0.19
gi|169790973 parkin isoform 3 [Homo sapiens] 31 0.33
gi|5453760 neural precursor cell expressed, developmentally down... 31 0.33
gi|193083197 ubiquitin-like domain containing CTD phosphatase 1 ... 31 0.33
gi|18702331 OTU domain containing 7A [Homo sapiens] 31 0.33
gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo ... 30 0.57
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 30 0.74
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 30 0.74
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 30 0.74
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 30 0.74
gi|239756081 PREDICTED: hypothetical protein [Homo sapiens] 29 1.3
>gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30
precursor [Homo sapiens]
Length = 133
Score = 262 bits (669), Expect = 7e-71
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVE 60
MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVE
Sbjct: 1 MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVE 60
Query: 61 ALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVV 120
ALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVV
Sbjct: 61 ALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVV 120
Query: 121 PTFGKKKGPNANS 133
PTFGKKKGPNANS
Sbjct: 121 PTFGKKKGPNANS 133
>gi|239750097 PREDICTED: hypothetical protein XP_002347291 [Homo
sapiens]
Length = 143
Score = 117 bits (294), Expect = 2e-27
Identities = 58/72 (80%), Positives = 66/72 (91%)
Query: 4 FVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALT 63
+VRA+ELHT EVTG ETVAQ KAHVASLEG+ PED+VVLLAG+PL++EATLGQCGVEALT
Sbjct: 29 YVRARELHTLEVTGLETVAQSKAHVASLEGLIPEDKVVLLAGSPLQNEATLGQCGVEALT 88
Query: 64 TLEVAGRMLGGK 75
TLEV GR LGG+
Sbjct: 89 TLEVVGRRLGGE 100
>gi|239755591 PREDICTED: similar to Putative ubiquitin-like
protein FUBI-like protein ENSP00000310146 [Homo
sapiens]
Length = 137
Score = 117 bits (293), Expect = 3e-27
Identities = 58/71 (81%), Positives = 65/71 (91%)
Query: 4 FVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALT 63
+VRA+ELHT EVTG ETVAQ KAHVASLEG+ PED+VVLLAG+PL++EATLGQCGVEALT
Sbjct: 29 YVRARELHTLEVTGLETVAQSKAHVASLEGLIPEDKVVLLAGSPLQNEATLGQCGVEALT 88
Query: 64 TLEVAGRMLGG 74
TLEV GR LGG
Sbjct: 89 TLEVVGRRLGG 99
>gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 55.1 bits (131), Expect = 2e-08
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
+Q+FV+ + T EV + + +KA + EGI P+ Q ++ AG LED TL C
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 59 VEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKK 102
++ TL + R+ G +A+ K TPK K ++KK K
Sbjct: 129 IQKEPTLHLLLRLCG------VAKKRKKSYPTPKKNKHKRKKVK 166
>gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 55.1 bits (131), Expect = 2e-08
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
+Q+FV+ + T EV + + +KA + EGI P+ Q ++ AG LED TL C
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 59 VEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKK 102
++ TL + R+ G +A+ K TPK K ++KK K
Sbjct: 129 IQKEPTLHLLLRLCG------VAKKRKKSYPTPKKNKHKRKKVK 166
>gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 55.1 bits (131), Expect = 2e-08
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
+Q+FV+ + T EV + + +KA + EGI P+ Q ++ AG LED TL C
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 59 VEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKK 102
++ TL + R+ G +A+ K TPK K ++KK K
Sbjct: 129 IQKEPTLHLLLRLCG------VAKKRKKSYPTPKKNKHKRKKVK 166
>gi|208022622 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 54.7 bits (130), Expect = 2e-08
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
MQ+FV+ + T EV +T+ +KA + EGI P+ Q ++ AG LED TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 59 VEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKK 102
++ +TL + R+ GG + K TPK K ++KK K
Sbjct: 61 IQKESTLHLVLRLRGG-----AKKRKKKSYTTPKKNKHKRKKVK 99
>gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 54.7 bits (130), Expect = 2e-08
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
MQ+FV+ + T EV +T+ +KA + EGI P+ Q ++ AG LED TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 59 VEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKK 102
++ +TL + R+ GG + K TPK K ++KK K
Sbjct: 61 IQKESTLHLVLRLRGG-----AKKRKKKSYTTPKKNKHKRKKVK 99
>gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 52.0 bits (123), Expect = 1e-07
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
MQ+FV+ + T EV +T+ +KA + EGI P+ Q ++ AG LED TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 59 VEALTTLEVAGRMLGGKVHGSL 80
++ +TL + R+ GG + SL
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSL 82
>gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 52.0 bits (123), Expect = 1e-07
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
MQ+FV+ + T EV +T+ +KA + EGI P+ Q ++ AG LED TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 59 VEALTTLEVAGRMLGGKVHGSL 80
++ +TL + R+ GG + SL
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSL 82
>gi|11024714 ubiquitin B precursor [Homo sapiens]
Length = 229
Score = 49.7 bits (117), Expect = 7e-07
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
MQ+FV+ + T EV +T+ +KA + EGI P+ Q ++ AG LED TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 59 VEALTTLEVAGRMLGG 74
++ +TL + R+ GG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 49.7 bits (117), Expect = 7e-07
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
MQ+FV+ + T EV +T+ +KA + EGI P+ Q ++ AG LED TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 59 VEALTTLEVAGRMLGG 74
++ +TL + R+ GG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 49.7 bits (117), Expect = 7e-07
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
MQ+FV+ + T EV +T+ +KA + EGI P+ Q ++ AG LED TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 59 VEALTTLEVAGRMLGG 74
++ +TL + R+ GG
Sbjct: 213 IQKESTLHLVLRLRGG 228
>gi|67191208 ubiquitin C [Homo sapiens]
Length = 685
Score = 49.7 bits (117), Expect = 7e-07
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
MQ+FV+ + T EV +T+ +KA + EGI P+ Q ++ AG LED TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 59 VEALTTLEVAGRMLGG 74
++ +TL + R+ GG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 49.7 bits (117), Expect = 7e-07
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
MQ+FV+ + T EV +T+ +KA + EGI P+ Q ++ AG LED TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 59 VEALTTLEVAGRMLGG 74
++ +TL + R+ GG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 49.7 bits (117), Expect = 7e-07
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
MQ+FV+ + T EV +T+ +KA + EGI P+ Q ++ AG LED TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 59 VEALTTLEVAGRMLGG 74
++ +TL + R+ GG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 49.7 bits (117), Expect = 7e-07
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
MQ+FV+ + T EV +T+ +KA + EGI P+ Q ++ AG LED TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 59 VEALTTLEVAGRMLGG 74
++ +TL + R+ GG
Sbjct: 365 IQKESTLHLVLRLRGG 380
Score = 49.7 bits (117), Expect = 7e-07
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
MQ+FV+ + T EV +T+ +KA + EGI P+ Q ++ AG LED TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 59 VEALTTLEVAGRMLGG 74
++ +TL + R+ GG
Sbjct: 441 IQKESTLHLVLRLRGG 456
Score = 49.7 bits (117), Expect = 7e-07
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
MQ+FV+ + T EV +T+ +KA + EGI P+ Q ++ AG LED TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 59 VEALTTLEVAGRMLGG 74
++ +TL + R+ GG
Sbjct: 517 IQKESTLHLVLRLRGG 532
Score = 49.7 bits (117), Expect = 7e-07
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
MQ+FV+ + T EV +T+ +KA + EGI P+ Q ++ AG LED TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 59 VEALTTLEVAGRMLGG 74
++ +TL + R+ GG
Sbjct: 593 IQKESTLHLVLRLRGG 608
Score = 49.7 bits (117), Expect = 7e-07
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
MQ+FV+ + T EV +T+ +KA + EGI P+ Q ++ AG LED TL
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 59 VEALTTLEVAGRMLGG 74
++ +TL + R+ GG
Sbjct: 669 IQKESTLHLVLRLRGG 684
Score = 46.6 bits (109), Expect = 6e-06
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
MQ+FV+ + T EV +T+ +KA + EGI + Q ++ AG LED TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYN 212
Query: 59 VEALTTLEVAGRMLGG 74
++ +TL + R+ GG
Sbjct: 213 IQKESTLHLVLRLRGG 228
>gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens]
Length = 165
Score = 46.2 bits (108), Expect = 8e-06
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 12 TFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRM 71
T+EV +TVA +K V+ LEG+ + + G PLED+ LG+ G++ L+T+ + R+
Sbjct: 95 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 154
Query: 72 LGG 74
GG
Sbjct: 155 RGG 157
>gi|222352096 ubiquitin D [Homo sapiens]
Length = 165
Score = 40.4 bits (93), Expect = 4e-04
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 11 HTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGR 70
H +V +VAQ+KA + + GI PE Q+V G LED + G+ L +A
Sbjct: 102 HLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACY 161
Query: 71 MLGG 74
+GG
Sbjct: 162 CIGG 165
Score = 36.6 bits (83), Expect = 0.006
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 5 VRAQE--LHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEAL 62
VR++E L TF+ ++V +IK HV S + +DQV+LL L+ +L G++
Sbjct: 12 VRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKE 71
Query: 63 TTLEV 67
T+ +
Sbjct: 72 KTIHL 76
>gi|169790971 parkin isoform 2 [Homo sapiens]
Length = 437
Score = 35.0 bits (79), Expect = 0.018
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 1 MQLFVRAQELHTF--EVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
M +FVR H F EV ++ Q+K VA +G+ + V+ AG L ++ T+ C
Sbjct: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
Query: 59 VEALTTLEVAGR 70
++ + + + R
Sbjct: 61 LDQQSIVHIVQR 72
>gi|169790969 parkin isoform 1 [Homo sapiens]
Length = 465
Score = 35.0 bits (79), Expect = 0.018
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 1 MQLFVRAQELHTF--EVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
M +FVR H F EV ++ Q+K VA +G+ + V+ AG L ++ T+ C
Sbjct: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
Query: 59 VEALTTLEVAGR 70
++ + + + R
Sbjct: 61 LDQQSIVHIVQR 72
>gi|8567418 ubiquilin 3 [Homo sapiens]
Length = 655
Score = 34.7 bits (78), Expect = 0.023
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 13 FEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGV 59
F VT T+ Q+K ++ P+ V++ AG L+D +L QCGV
Sbjct: 35 FSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGV 81
>gi|190341072 AN1, ubiquitin-like, homolog [Homo sapiens]
Length = 727
Score = 32.7 bits (73), Expect = 0.087
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 1 MQLFVRAQELHTFE--VTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
M+LF+ FE V+ ETV +KA + LEGI Q ++ LE++ L
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYN 87
Query: 59 VEALTTLEVAGRMLGGKVH 77
+ TL++ M GG ++
Sbjct: 88 ISEGCTLKLVLAMRGGPIN 106
>gi|190341070 AN1, ubiquitin-like, homolog [Homo sapiens]
Length = 727
Score = 32.7 bits (73), Expect = 0.087
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 1 MQLFVRAQELHTFE--VTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
M+LF+ FE V+ ETV +KA + LEGI Q ++ LE++ L
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYN 87
Query: 59 VEALTTLEVAGRMLGGKVH 77
+ TL++ M GG ++
Sbjct: 88 ISEGCTLKLVLAMRGGPIN 106
>gi|41352712 inhibitor of nuclear factor kappa B kinase beta subunit
[Homo sapiens]
Length = 756
Score = 31.6 bits (70), Expect = 0.19
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 10 LHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLL-AGAPLEDEATLGQC 57
+HT+ VT E++ +KA + GI EDQ +L AG L + QC
Sbjct: 322 IHTYPVTEDESLQSLKARIQQDTGIPEEDQELLQEAGLALIPDKPATQC 370
>gi|169790973 parkin isoform 3 [Homo sapiens]
Length = 316
Score = 30.8 bits (68), Expect = 0.33
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 1 MQLFVRAQELHTF--EVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQ-- 56
M +FVR H F EV ++ Q+K VA +G+ + V+ AG L ++ T+ +
Sbjct: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQEFF 60
Query: 57 --CGVEALTTLEVA 68
CG + E +
Sbjct: 61 FKCGAHPTSDKETS 74
>gi|5453760 neural precursor cell expressed, developmentally
down-regulated 8 [Homo sapiens]
Length = 81
Score = 30.8 bits (68), Expect = 0.33
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 14 EVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG 73
++ + V +IK V EGI P+ Q ++ +G + DE T + + L + + G
Sbjct: 16 DIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75
Query: 74 G 74
G
Sbjct: 76 G 76
>gi|193083197 ubiquitin-like domain containing CTD phosphatase 1
[Homo sapiens]
Length = 318
Score = 30.8 bits (68), Expect = 0.33
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 8 QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVL---LAGAPLEDEATLGQCGVEALTT 64
QE ++ +TV +K + +L G+ PE Q +L + G P E++ LG ++ T
Sbjct: 12 QEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTK 71
Query: 65 LEVAG 69
+ + G
Sbjct: 72 IMMMG 76
>gi|18702331 OTU domain containing 7A [Homo sapiens]
Length = 926
Score = 30.8 bits (68), Expect = 0.33
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 72 LGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGR 105
LGG VHG + RA G+ A++ K+KK R
Sbjct: 535 LGGLVHGKMGRANSANGKNGDSAERGKEKKAKSR 568
>gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo
sapiens]
Length = 944
Score = 30.0 bits (66), Expect = 0.57
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 19 ETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQC-GVEALTTLEVAGRMLGGKVH 77
E +A + A V L + P QVVL+ G PLE EA L G +A V G+ GG +
Sbjct: 426 EGLATLPAGVGPLARVQP--QVVLVVGRPLEGEAALATGEGPQARVHPLVDGQQ-GGALE 482
Query: 78 GSLARA---GKVRGQTPKVAKQ 96
G A A G + P+V Q
Sbjct: 483 GLAALATLVGPLARVVPQVVAQ 504
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo
sapiens]
Length = 1126
Score = 29.6 bits (65), Expect = 0.74
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 9 ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGV 59
+ TF V Q V + K H+A+ I E Q ++ G L+D+ L + V
Sbjct: 27 QTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV 77
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo
sapiens]
Length = 1126
Score = 29.6 bits (65), Expect = 0.74
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 9 ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGV 59
+ TF V Q V + K H+A+ I E Q ++ G L+D+ L + V
Sbjct: 27 QTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV 77
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo
sapiens]
Length = 1126
Score = 29.6 bits (65), Expect = 0.74
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 9 ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGV 59
+ TF V Q V + K H+A+ I E Q ++ G L+D+ L + V
Sbjct: 27 QTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV 77
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo
sapiens]
Length = 1132
Score = 29.6 bits (65), Expect = 0.74
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 9 ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGV 59
+ TF V Q V + K H+A+ I E Q ++ G L+D+ L + V
Sbjct: 27 QTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV 77
>gi|239756081 PREDICTED: hypothetical protein [Homo sapiens]
Length = 244
Score = 28.9 bits (63), Expect = 1.3
Identities = 24/77 (31%), Positives = 30/77 (38%)
Query: 17 GQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGGKV 76
GQE I+ ++E + ED V L L D + TL A R+ G V
Sbjct: 156 GQEAALTIEGRAVAMEALGKEDHDVGLLLMALTDVGIGHLAEAQWCGTLPHAERLANGLV 215
Query: 77 HGSLARAGKVRGQTPKV 93
G LA G V KV
Sbjct: 216 CGILAHLGGVILDAEKV 232
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,659,138
Number of Sequences: 37866
Number of extensions: 179101
Number of successful extensions: 899
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 814
Number of HSP's gapped (non-prelim): 96
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.