Guide to the Human Genome
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Name: C4BPB Sequence: fasta or formatted (252aa) NCBI GI: 4502505
Description:

complement component 4 binding protein, beta chain isoform 1 precursor

Referenced in:

Complement

Other entries for this name:
alt prot [251aa] complement component 4 binding protein, beta chain isoform 2 prec...
alt mRNA [252aa] complement component 4 binding protein, beta chain isoform 1 prec...
alt prot [251aa] complement component 4 binding protein, beta chain isoform 2 prec...
alt mRNA [252aa] complement component 4 binding protein, beta chain isoform 1 prec...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         14           1
 C cysteine            6.7         17           2
 D aspartate           4.4         11           1
 E glutamate           9.1         23           2
 F phenylalanine       4.4         11           2
 G glycine             6.0         15           1
 H histidine           2.4          6           1
 I isoleucine          3.2          8           1
 K lysine              7.1         18           2
 L leucine             9.1         23           2
 M methionine          2.8          7           1
 N asparagine          4.8         12           2
 P proline             6.0         15           2
 Q glutamine           3.6          9           2
 R arginine            2.0          5           1
 S serine              7.1         18           3
 T threonine           4.0         10           3
 V valine              6.3         16           1
 W tryptophan          2.0          5           1
 Y tyrosine            3.6          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   complement component 4 binding protein, beta chain is... 
C4BPB                 1.000   complement component 4 binding protein, beta chain i...
C4BPB                 1.000   complement component 4 binding protein, beta chain i...
C4BPB                 0.988   complement component 4 binding protein, beta chain i...
C4BPB                 0.988   complement component 4 binding protein, beta chain i...
CSMD1                 0.190   CUB and Sushi multiple domains 1 
CSMD3                 0.151   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.151   CUB and Sushi multiple domains 3 isoform 3 
CSMD3                 0.151   CUB and Sushi multiple domains 3 isoform 1 
CSMD2                 0.145   CUB and Sushi multiple domains 2 
SVEP1                 0.140   polydom 
CR2                   0.128   complement component (3d/Epstein Barr virus) recepto...
CR2                   0.126   complement component (3d/Epstein Barr virus) recepto...
CFB                   0.122   complement factor B preproprotein 
SELE                  0.120   selectin E precursor 
SEZ6L                 0.114   seizure related 6 homolog (mouse)-like precursor [Ho...
SELP                  0.107   selectin P precursor 
CR1L                  0.107   complement component (3b/4b) receptor 1-like 
SEZ6L2                0.103   seizure related 6 homolog (mouse)-like 2 isoform 3 ...
SEZ6L2                0.103   seizure related 6 homolog (mouse)-like 2 isoform 2 ...
CR1                   0.101   complement receptor 1 isoform S precursor 
CR1                   0.101   complement receptor 1 isoform F precursor 
SEZ6L2                0.101   seizure related 6 homolog (mouse)-like 2 isoform 4 ...
SEZ6L2                0.101   seizure related 6 homolog (mouse)-like 2 isoform 1 [H...
C2                    0.093   complement component 2 isoform 1 preproprotein [Homo...
C4BPA                 0.089   complement component 4 binding protein, alpha chain p...
CD55                  0.083   decay accelerating factor for complement isoform 2 ...
CD55                  0.083   decay accelerating factor for complement isoform 1 p...
SEZ6                  0.083   seizure related 6 homolog isoform 2 
SEZ6                  0.083   seizure related 6 homolog isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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