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Search of human proteins with 4502315
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4502315 ATPase, H+ transporting, lysosomal V1 subunit C1
[Homo sapiens]
(382 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4502315 ATPase, H+ transporting, lysosomal V1 subunit C1 [Hom... 758 0.0
gi|47717098 vacuolar H+ ATPase C2 isoform b [Homo sapiens] 490 e-138
gi|87159812 vacuolar H+ ATPase C2 isoform a [Homo sapiens] 468 e-132
gi|56550047 uveal autoantigen with coiled-coil domains and ankyr... 35 0.15
gi|59850762 uveal autoantigen with coiled-coil domains and ankyr... 35 0.15
gi|5031719 glypican 6 precursor [Homo sapiens] 34 0.19
gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens] 33 0.33
gi|41281571 synovial sarcoma, X breakpoint 2 interacting protein... 32 0.95
gi|6382071 diaphanous 2 isoform 12C [Homo sapiens] 32 1.2
gi|5803003 diaphanous 2 isoform 156 [Homo sapiens] 32 1.2
gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo... 32 1.2
gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo... 32 1.2
gi|40254949 erythrocyte membrane protein band 4.1 like 5 [Homo s... 32 1.2
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 31 1.6
gi|110349721 titin isoform novex-3 [Homo sapiens] 31 2.1
gi|109255234 centrosomal protein 290kDa [Homo sapiens] 30 2.8
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 30 3.6
gi|118722349 RNA binding motif protein 12B [Homo sapiens] 30 4.7
gi|5730122 zinc finger and BTB domain containing 6 [Homo sapiens] 30 4.7
gi|194440727 dynein heavy chain domain 2 isoform 1 [Homo sapiens] 29 6.2
gi|217035156 zinc finger protein 780A isoform a [Homo sapiens] 29 6.2
gi|46399200 testis-specific bromodomain protein [Homo sapiens] 29 8.1
gi|46399198 testis-specific bromodomain protein [Homo sapiens] 29 8.1
gi|32130516 serologically defined colon cancer antigen 1 [Homo s... 29 8.1
gi|19526773 Apg3p [Homo sapiens] 29 8.1
gi|120953300 leucine-rich repeats and IQ motif containing 1 isof... 29 8.1
gi|120953243 leucine-rich repeats and IQ motif containing 1 isof... 29 8.1
>gi|4502315 ATPase, H+ transporting, lysosomal V1 subunit C1 [Homo
sapiens]
Length = 382
Score = 758 bits (1958), Expect = 0.0
Identities = 382/382 (100%), Positives = 382/382 (100%)
Query: 1 MTEFWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAK 60
MTEFWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAK
Sbjct: 1 MTEFWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAK 60
Query: 61 LDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKN 120
LDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKN
Sbjct: 61 LDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKN 120
Query: 121 ISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSE 180
ISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSE
Sbjct: 121 ISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSE 180
Query: 181 YLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHK 240
YLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHK
Sbjct: 181 YLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHK 240
Query: 241 ARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKAL 300
ARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKAL
Sbjct: 241 ARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKAL 300
Query: 301 RVFVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLHELYKHLDSSAAAIIDAPMDIPGLN 360
RVFVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLHELYKHLDSSAAAIIDAPMDIPGLN
Sbjct: 301 RVFVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLHELYKHLDSSAAAIIDAPMDIPGLN 360
Query: 361 LSQQEYYPYVYYKIDCNLLEFK 382
LSQQEYYPYVYYKIDCNLLEFK
Sbjct: 361 LSQQEYYPYVYYKIDCNLLEFK 382
>gi|47717098 vacuolar H+ ATPase C2 isoform b [Homo sapiens]
Length = 381
Score = 490 bits (1261), Expect = e-138
Identities = 238/382 (62%), Positives = 320/382 (83%), Gaps = 3/382 (0%)
Query: 1 MTEFWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAK 60
M+EFWLISAPG+K Q E+++ TSK+N L+ +KF IPD KVGTLD LVGLSDEL K
Sbjct: 1 MSEFWLISAPGDKENLQALERMNTVTSKSN-LSYNTKFAIPDFKVGTLDSLVGLSDELGK 59
Query: 61 LDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKN 120
LD F E +++++AQ + +V+EDSK KVQE+LLANGVDL +++T F+WDMAKYP+KQ L +
Sbjct: 60 LDTFAESLIRRMAQSVVEVMEDSKGKVQEHLLANGVDLTSFVTHFEWDMAKYPVKQPLVS 119
Query: 121 ISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSE 180
+ + IAK + QI+ DLKSR +AYN LK NL+NLE+K+ G+L TR+L++IV K+DFVLDSE
Sbjct: 120 VVDTIAKQLAQIEMDLKSRTAAYNTLKTNLENLEKKSMGNLFTRTLSDIVSKEDFVLDSE 179
Query: 181 YLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHK 240
YLVTLLV+VPK N++ W K YE+L++MVVPRS+ +++ED++ L VTLFRK ++DF+ K
Sbjct: 180 YLVTLLVIVPKPNYSQWQKTYESLSDMVVPRSTKLITEDKEGGLFTVTLFRKVIEDFKTK 239
Query: 241 ARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKAL 300
A+ENKF VR+F Y+E+E++ ++EEM RL +DKK+Q+GPL+RWLKVNFSEAFIAWIH+KAL
Sbjct: 240 AKENKFTVREFYYDEKEIEREREEMARLLSDKKQQYGPLLRWLKVNFSEAFIAWIHIKAL 299
Query: 301 RVFVESVLRYGLPVNFQAMLLQPNKK-TLKKLREVLHELYKHLDSSAA-AIIDAPMDIPG 358
RVFVESVLRYGLPVNFQA+LLQP+KK + K+LREVL+ +++HLD AA +I+DA ++IPG
Sbjct: 300 RVFVESVLRYGLPVNFQAVLLQPHKKSSTKRLREVLNSVFRHLDEVAATSILDASVEIPG 359
Query: 359 LNLSQQEYYPYVYYKIDCNLLE 380
L L+ Q+Y+PYVY+ ID +LL+
Sbjct: 360 LQLNNQDYFPYVYFHIDLSLLD 381
>gi|87159812 vacuolar H+ ATPase C2 isoform a [Homo sapiens]
Length = 427
Score = 468 bits (1204), Expect = e-132
Identities = 238/428 (55%), Positives = 320/428 (74%), Gaps = 49/428 (11%)
Query: 1 MTEFWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAK 60
M+EFWLISAPG+K Q E+++ TSK+N L+ +KF IPD KVGTLD LVGLSDEL K
Sbjct: 1 MSEFWLISAPGDKENLQALERMNTVTSKSN-LSYNTKFAIPDFKVGTLDSLVGLSDELGK 59
Query: 61 LDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKN 120
LD F E +++++AQ + +V+EDSK KVQE+LLANGVDL +++T F+WDMAKYP+KQ L +
Sbjct: 60 LDTFAESLIRRMAQSVVEVMEDSKGKVQEHLLANGVDLTSFVTHFEWDMAKYPVKQPLVS 119
Query: 121 ISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSE 180
+ + IAK + QI+ DLKSR +AYN LK NL+NLE+K+ G+L TR+L++IV K+DFVLDSE
Sbjct: 120 VVDTIAKQLAQIEMDLKSRTAAYNTLKTNLENLEKKSMGNLFTRTLSDIVSKEDFVLDSE 179
Query: 181 YLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHK 240
YLVTLLV+VPK N++ W K YE+L++MVVPRS+ +++ED++ L VTLFRK ++DF+ K
Sbjct: 180 YLVTLLVIVPKPNYSQWQKTYESLSDMVVPRSTKLITEDKEGGLFTVTLFRKVIEDFKTK 239
Query: 241 ARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQF------------------------ 276
A+ENKF VR+F Y+E+E++ ++EEM RL +DKK+Q+
Sbjct: 240 AKENKFTVREFYYDEKEIEREREEMARLLSDKKQQYQTSCVALKKGSSTFPDHKVKVTPL 299
Query: 277 ----------------------GPLVRWLKVNFSEAFIAWIHVKALRVFVESVLRYGLPV 314
GPL+RWLKVNFSEAFIAWIH+KALRVFVESVLRYGLPV
Sbjct: 300 GNPDRPAAGQTDRERESEGEGEGPLLRWLKVNFSEAFIAWIHIKALRVFVESVLRYGLPV 359
Query: 315 NFQAMLLQPNKK-TLKKLREVLHELYKHLDSSAA-AIIDAPMDIPGLNLSQQEYYPYVYY 372
NFQA+LLQP+KK + K+LREVL+ +++HLD AA +I+DA ++IPGL L+ Q+Y+PYVY+
Sbjct: 360 NFQAVLLQPHKKSSTKRLREVLNSVFRHLDEVAATSILDASVEIPGLQLNNQDYFPYVYF 419
Query: 373 KIDCNLLE 380
ID +LL+
Sbjct: 420 HIDLSLLD 427
>gi|56550047 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 2 [Homo sapiens]
Length = 1403
Score = 34.7 bits (78), Expect = 0.15
Identities = 31/146 (21%), Positives = 66/146 (45%), Gaps = 4/146 (2%)
Query: 12 EKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKK 71
+K C + EK+HA TS+N NL +K +V + L+D LAK + + V KK
Sbjct: 818 KKKCGEDQEKIHALTSENTNLKKMMSNQYVPVKTHE-EVKMTLNDTLAKTNRELLDVKKK 876
Query: 72 VAQYMADVLE-DSKDKVQENLLANGVDLV--TYITRFQWDMAKYPIKQSLKNISEIIAKG 128
+ ++ K+++ + L N + + YI+ + + + QS++ + + A+
Sbjct: 877 FEDINQEFVKIKDKNEILKRNLENTQNQIKAEYISLAEHEAKMSSLSQSMRKVQDSNAEI 936
Query: 129 VTQIDNDLKSRASAYNNLKGNLQNLE 154
+ + + + +K + L+
Sbjct: 937 LANYRKGQEEIVTLHAEIKAQKKELD 962
>gi|59850762 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 1 [Homo sapiens]
Length = 1416
Score = 34.7 bits (78), Expect = 0.15
Identities = 31/146 (21%), Positives = 66/146 (45%), Gaps = 4/146 (2%)
Query: 12 EKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKK 71
+K C + EK+HA TS+N NL +K +V + L+D LAK + + V KK
Sbjct: 831 KKKCGEDQEKIHALTSENTNLKKMMSNQYVPVKTHE-EVKMTLNDTLAKTNRELLDVKKK 889
Query: 72 VAQYMADVLE-DSKDKVQENLLANGVDLV--TYITRFQWDMAKYPIKQSLKNISEIIAKG 128
+ ++ K+++ + L N + + YI+ + + + QS++ + + A+
Sbjct: 890 FEDINQEFVKIKDKNEILKRNLENTQNQIKAEYISLAEHEAKMSSLSQSMRKVQDSNAEI 949
Query: 129 VTQIDNDLKSRASAYNNLKGNLQNLE 154
+ + + + +K + L+
Sbjct: 950 LANYRKGQEEIVTLHAEIKAQKKELD 975
>gi|5031719 glypican 6 precursor [Homo sapiens]
Length = 555
Score = 34.3 bits (77), Expect = 0.19
Identities = 49/230 (21%), Positives = 96/230 (41%), Gaps = 18/230 (7%)
Query: 107 WDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSL 166
+ +A P ++ I + T +++ + S + L+ +NL + + + T +
Sbjct: 42 FSLADIPYQEIAGEHLRICPQEYTCCTTEMEDKLSQQSKLE--FENLVEETSHFVRTTFV 99
Query: 167 AEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCN 226
+ K D+F + LL K ++ +++ Y L ++ +E + Y
Sbjct: 100 SRHKKFDEFFRE------LLENAEKSLNDMFVRTYGMLYMQNSEVFQDLFTELKRYYTGG 153
Query: 227 VTLFRKAVDDFRHKARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVN 286
+ ++DF + E F + + QY+ E D E TD+ K FG + R LK+
Sbjct: 154 NVNLEEMLNDFWARLLERMFQLINPQYHFSE---DYLECVSKYTDQLKPFGDVPRKLKIQ 210
Query: 287 FSEAFIAWIHVKALRVFVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLH 336
+ AFI A R FV+ L G V + + P ++ L ++L+
Sbjct: 211 VTRAFI------AARTFVQG-LTVGREVANRVSKVSPTPGCIRALMKMLY 253
>gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens]
Length = 1217
Score = 33.5 bits (75), Expect = 0.33
Identities = 55/307 (17%), Positives = 128/307 (41%), Gaps = 42/307 (13%)
Query: 10 PGEKTCQQTWEKLHAATSKNNNLA------VTSKFNIPDLKVGTLDVLVGLSDELAKLDA 63
P +++ Q LHA S +L + S+ ++ D K + L+DE+ +L
Sbjct: 755 PKQRSLQSLEASLHAMESTRESLKAELGTDLLSQLSLEDQKR-----VDALNDEIRQLQQ 809
Query: 64 F----------VEGVVKKVAQYMADVLEDSKDKVQENLL----ANGVDLVTYITRFQWDM 109
+EG++ +V Y+ + L D+V++ L G ++T T
Sbjct: 810 ENRQLLNERIKLEGIITRVETYLNENLRKRLDQVEQELNELRETEGGTVLTATTS----- 864
Query: 110 AKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQ---NLERKNAGSLL--TR 164
++ K + + +A+ +DN + + L+ +++ N+E+++ ++ T+
Sbjct: 865 ---ELEAINKRVKDTMARS-EDLDNSIDKTEAGIKELQKSMERWKNMEKEHMDAINHDTK 920
Query: 165 SLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYL 224
L ++ + +L + + + ++Y+TL+ + R + + Y
Sbjct: 921 ELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAFEKYQTLSLKQLFRKLEQCNTELKKYS 980
Query: 225 CNVTLFRKAVDDFRHKARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLK 284
+ +KA+D F + + + + +++ + + K+ E MN L K + + +
Sbjct: 981 ---HVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRKYEAIQLTFKQVS 1037
Query: 285 VNFSEAF 291
NFSE F
Sbjct: 1038 KNFSEVF 1044
>gi|41281571 synovial sarcoma, X breakpoint 2 interacting protein
[Homo sapiens]
Length = 614
Score = 32.0 bits (71), Expect = 0.95
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 115 KQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDD 174
K ++ + IIA TQ ++D+K + YN LK L L + + V + D
Sbjct: 177 KDEVQKLQNIIASRATQYNHDMKRKEREYNKLKERLHQLVMNKKDKKIAMDILNYVGRAD 236
Score = 30.0 bits (66), Expect = 3.6
Identities = 29/164 (17%), Positives = 73/164 (44%), Gaps = 21/164 (12%)
Query: 131 QIDNDLKSRASAYNNLKGNLQNLERKNAG--------SLLTRSLAEIVKKD-DFVLDSEY 181
++ +D+ S Y+ LK L+ R+ G R+L +++K + D V +
Sbjct: 126 KLGSDMDHLQSCYSKLKEQLETSRREMIGLQERDRQLQCKNRNLHQLLKNEKDEVQKLQN 185
Query: 182 LVTLLVVVPKLNHN------DWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVT----LFR 231
++ + NH+ ++ K E L ++V+ + ++ D +Y+ +R
Sbjct: 186 IIASRAT--QYNHDMKRKEREYNKLKERLHQLVMNKKDKKIAMDILNYVGRADGKRGSWR 243
Query: 232 KAVDDFRHKARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQ 275
+ R++ K ++ D++Y ++++ + E+ ++ KK+
Sbjct: 244 TGKTEARNEDEMYKILLNDYEYRQKQILMENAELKKVLQQMKKE 287
>gi|6382071 diaphanous 2 isoform 12C [Homo sapiens]
Length = 1096
Score = 31.6 bits (70), Expect = 1.2
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 194 HNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNV-TLFRKAVDDFRHKARENKFIVRDFQ 252
HN+ +K YE L E + S V E+ L N TLF +AV + +K RE + R +
Sbjct: 965 HNNMMKLYENLGEYFIFDSKTVSIEEFFGDLNNFRTLFLEAVRE-NNKRREMEEKTRRAK 1023
Query: 253 YNEEEMKADKEEMNRLSTDKKKQ 275
+E KA++E++ R KKKQ
Sbjct: 1024 LAKE--KAEQEKLER--QKKKKQ 1042
>gi|5803003 diaphanous 2 isoform 156 [Homo sapiens]
Length = 1101
Score = 31.6 bits (70), Expect = 1.2
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 194 HNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNV-TLFRKAVDDFRHKARENKFIVRDFQ 252
HN+ +K YE L E + S V E+ L N TLF +AV + +K RE + R +
Sbjct: 965 HNNMMKLYENLGEYFIFDSKTVSIEEFFGDLNNFRTLFLEAVRE-NNKRREMEEKTRRAK 1023
Query: 253 YNEEEMKADKEEMNRLSTDKKKQ 275
+E KA++E++ R KKKQ
Sbjct: 1024 LAKE--KAEQEKLER--QKKKKQ 1042
>gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 31.6 bits (70), Expect = 1.2
Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 31/286 (10%)
Query: 16 QQTWEKLHAATSKNNNLA---VTSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKV 72
QQT + L A K N L + + + DL+ G+L+ L +L + +EG +K
Sbjct: 1010 QQTLDDLQAEEDKVNTLTKAKIKLEQQVDDLE-GSLEQEKKLRMDLERAKRKLEGDLKLA 1068
Query: 73 AQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAK-YPIKQSLKNISEIIAKGVTQ 131
+ + D+ E+ K ++ E L ++ ++ + + A +++ +K + I + +
Sbjct: 1069 QESIMDI-ENEKQQLDEKLKKKEFEISNLQSKIEDEQALGIQLQKKIKELQARIEELEEE 1127
Query: 132 IDNDLKSRASAY---NNLKGNLQNL-ERKNAGSLLTRSLAEIVKK------------DDF 175
I+ + SRA A ++L L+ + ER T + E+ KK ++
Sbjct: 1128 IEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEA 1187
Query: 176 VLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMV--VPRSSNVLSEDQDSYLCNVTLFRKA 233
L E L + H D + + L E + + R L +++ +
Sbjct: 1188 TLQHEATAATL----RKKHADSVAE---LGEQIDNLQRVKQKLEKEKSEMKMEIDDLASN 1240
Query: 234 VDDFRHKARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPL 279
V+ + + R + E+K+ +EE RL D Q G L
Sbjct: 1241 VETVSKAKGNLEKMCRTLEDQLSELKSKEEEQQRLINDLTAQRGRL 1286
>gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 31.6 bits (70), Expect = 1.2
Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 31/286 (10%)
Query: 16 QQTWEKLHAATSKNNNLA---VTSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKV 72
QQT + L A K N L + + + DL+ G+L+ L +L + +EG +K
Sbjct: 1010 QQTLDDLQAEEDKVNTLTKAKIKLEQQVDDLE-GSLEQEKKLRMDLERAKRKLEGDLKLA 1068
Query: 73 AQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAK-YPIKQSLKNISEIIAKGVTQ 131
+ + D+ E+ K ++ E L ++ ++ + + A +++ +K + I + +
Sbjct: 1069 QESIMDI-ENEKQQLDEKLKKKEFEISNLQSKIEDEQALGIQLQKKIKELQARIEELEEE 1127
Query: 132 IDNDLKSRASAY---NNLKGNLQNL-ERKNAGSLLTRSLAEIVKK------------DDF 175
I+ + SRA A ++L L+ + ER T + E+ KK ++
Sbjct: 1128 IEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEA 1187
Query: 176 VLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMV--VPRSSNVLSEDQDSYLCNVTLFRKA 233
L E L + H D + + L E + + R L +++ +
Sbjct: 1188 TLQHEATAATL----RKKHADSVAE---LGEQIDNLQRVKQKLEKEKSEMKMEIDDLASN 1240
Query: 234 VDDFRHKARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPL 279
V+ + + R + E+K+ +EE RL D Q G L
Sbjct: 1241 VETVSKAKGNLEKMCRTLEDQLSELKSKEEEQQRLINDLTAQRGRL 1286
>gi|40254949 erythrocyte membrane protein band 4.1 like 5 [Homo
sapiens]
Length = 733
Score = 31.6 bits (70), Expect = 1.2
Identities = 37/170 (21%), Positives = 73/170 (42%), Gaps = 21/170 (12%)
Query: 39 NIPDLKVGTLDVLVGLSDELAKLDAF--------VEGVVKKVAQYMADVLEDSKDKVQEN 90
N PDL T+ ++G SD + A + G+ + +Y + L+D+ +K+++
Sbjct: 455 NSPDLLEATIGDVIGASDTMETSQALNDVNVATRLPGLGEPEVEY--ETLKDTSEKLKQL 512
Query: 91 LLANGVDL-----VTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDND-----LKSRA 140
+ N L + Q ++ K K L N+ E V ++ D LK++
Sbjct: 513 EMENSPLLSPRSNIDVNINSQEEVVKLTEK-CLNNVIESPGLNVMRVPPDFKSNILKAQV 571
Query: 141 SAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVP 190
A + + L KNA + + ++ +++ L E L TL+++ P
Sbjct: 572 EAVHKVTKEDSLLSHKNANVQDAATNSAVLNENNVPLPKESLETLMLITP 621
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 31.2 bits (69), Expect = 1.6
Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 250 DFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRVFVESVLR 309
DF+ E ++ +L +D+ K PL+ + N + + + + F+ +++R
Sbjct: 1382 DFEERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIE---VLGFNARQRKAFLNAIMR 1438
Query: 310 YGLP----VNFQAMLLQPNKKTLKKLREVLHELYKHLDSSAAAIIDAPMD-IPGLNLSQQ 364
+G+P N ++ K+ K+ R + +HL A + D +P LS+Q
Sbjct: 1439 WGMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQ 1498
>gi|110349721 titin isoform novex-3 [Homo sapiens]
Length = 5604
Score = 30.8 bits (68), Expect = 2.1
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 119 KNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLD 178
+N+ ++ +G +I DL+ S +N Q++E+K + KK D++ D
Sbjct: 3618 ENVEALVERGEDRIKVDLRFTGSPFNKK----QDVEQKGMMRTIHFKTMSSAKKTDYMYD 3673
Query: 179 SEYL 182
EYL
Sbjct: 3674 EEYL 3677
>gi|109255234 centrosomal protein 290kDa [Homo sapiens]
Length = 2479
Score = 30.4 bits (67), Expect = 2.8
Identities = 42/234 (17%), Positives = 110/234 (47%), Gaps = 26/234 (11%)
Query: 51 LVGLSDELAKLDAFVEGVVKKVAQYMAD------VLEDSKDKVQENLLANGVDLVTYIT- 103
++ L + + D+ ++ + ++V QY + ++ED K+++Q N A+ + T++
Sbjct: 350 VMALQQGIQERDSQIKMLTEQVEQYTKEMEKNTCIIEDLKNELQRNKGASTLSQQTHMKI 409
Query: 104 RFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLT 163
+ D+ K K++ + +E+ + D +L + + + LE
Sbjct: 410 QSTLDILKEKTKEA-ERTAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVVEIKNC 468
Query: 164 RSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMV--VPRSSNVLSEDQD 221
++ +I ++ +L E + +L +D++ + E L E V P++ L+E ++
Sbjct: 469 KNQIKIRDREIEILTKE------INKLELKISDFLDENEALRERVGLEPKTMIDLTEFRN 522
Query: 222 SYLCNVTLFRKAVDDFRHKARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQ 275
S K + +++A EN+ ++++ + EEE K+++ +++ ++ K+
Sbjct: 523 S---------KHLKQQQYRA-ENQILLKEIESLEEERLDLKKKIRQMAQERGKR 566
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 30.0 bits (66), Expect = 3.6
Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 17/156 (10%)
Query: 110 AKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEI 169
A + +K L ++ E + Q N LK L+GN+ L++ + E
Sbjct: 925 ASHQLKLELNSMQEQLI----QAQNTLKQNEKEEQQLQGNINELKQSS----------EQ 970
Query: 170 VKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTL 229
KK L E + +L K + ++Q T A + +S Q++Y +
Sbjct: 971 KKKQIEALQGELKIAVL---QKTELENKLQQQLTQAAQELAAEKEKISVLQNNYEKSQET 1027
Query: 230 FRKAVDDFRHKARENKFIVRDFQYNEEEMKADKEEM 265
F++ DF + E +D + EE++ +E++
Sbjct: 1028 FKQLQSDFYGRESELLATRQDLKSVEEKLSLAQEDL 1063
>gi|118722349 RNA binding motif protein 12B [Homo sapiens]
Length = 1001
Score = 29.6 bits (65), Expect = 4.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 231 RKAVDDFRHKARENKFIVRDFQYNEEEMKADKEE 264
R +DFRH + + +F DF+++ E+ + +EE
Sbjct: 552 RHPPEDFRHSSEDFRFPPEDFRHSPEDFRRPREE 585
>gi|5730122 zinc finger and BTB domain containing 6 [Homo sapiens]
Length = 424
Score = 29.6 bits (65), Expect = 4.7
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 250 DFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKAL 300
DF EEE A + + L++++K+ P + + + F + I +HV+++
Sbjct: 175 DFHVKEEESNALQSTVESLTSERKEMKSPELSTVDIGFKDNEICILHVESI 225
>gi|194440727 dynein heavy chain domain 2 isoform 1 [Homo sapiens]
Length = 3092
Score = 29.3 bits (64), Expect = 6.2
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 11/75 (14%)
Query: 50 VLVGLSDELAKLDAFVE-GVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITR---- 104
+++ + E +++ F E ++++ QY+ DV + K ++QE+ + V +I +
Sbjct: 612 LILEIEKESRRMEEFTEFAELERMQQYVTDVRQLQK-RIQES-----EEAVQFINKEEEL 665
Query: 105 FQWDMAKYPIKQSLK 119
F+W++ KYP LK
Sbjct: 666 FKWELTKYPELDKLK 680
>gi|217035156 zinc finger protein 780A isoform a [Homo sapiens]
Length = 642
Score = 29.3 bits (64), Expect = 6.2
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Query: 321 LQPNKKTLKKLREVLHELYKHLDSSAAAIIDAPMDIPGLNLSQQEYYPYV 370
LQP+++TL R+V+ E Y HL S A + I P D+ + L +QE P++
Sbjct: 23 LQPDQRTL--YRDVMLENYSHLISLAGSSISKP-DV--ITLLEQEKEPWM 67
>gi|46399200 testis-specific bromodomain protein [Homo sapiens]
Length = 947
Score = 28.9 bits (63), Expect = 8.1
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 173 DDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRK 232
D +L+SE + + N + W ++L + V P S V+ + + FRK
Sbjct: 782 DTTMLESECQAPVQKDIKIKNADSW----KSLGKPVKP--SGVMKSSDELF----NQFRK 831
Query: 233 AVDDFRHKARENKFIVRDFQYNEEEMKADKEEMNRL 268
A + KAR + I + + N +E+KA +E L
Sbjct: 832 AAIEKEVKARTQELIRKHLEQNTKELKASQENQRDL 867
>gi|46399198 testis-specific bromodomain protein [Homo sapiens]
Length = 947
Score = 28.9 bits (63), Expect = 8.1
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 173 DDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRK 232
D +L+SE + + N + W ++L + V P S V+ + + FRK
Sbjct: 782 DTTMLESECQAPVQKDIKIKNADSW----KSLGKPVKP--SGVMKSSDELF----NQFRK 831
Query: 233 AVDDFRHKARENKFIVRDFQYNEEEMKADKEEMNRL 268
A + KAR + I + + N +E+KA +E L
Sbjct: 832 AAIEKEVKARTQELIRKHLEQNTKELKASQENQRDL 867
>gi|32130516 serologically defined colon cancer antigen 1 [Homo
sapiens]
Length = 1076
Score = 28.9 bits (63), Expect = 8.1
Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 24/224 (10%)
Query: 66 EGVVKKVAQYMADVLEDSKDKVQENLL---ANGVDLVTYITRFQWDMAKYPIKQSLKNI- 121
E V+ + ++ D +D K V+E A + + + R +A P + LK +
Sbjct: 128 EYVILNILRFRTDEADDVKFAVRERYPLDHARAAEPLLTLERLTEIVASAPKGELLKRVL 187
Query: 122 SEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSE- 180
+ ++ G I++ L N GN++ ++ K + + L + K +D++ +
Sbjct: 188 NPLLPYGPALIEHCLLE-----NGFSGNVK-VDEKLETKDIEKVLVSLQKAEDYMKTTSN 241
Query: 181 -----YLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVD 235
Y++ + P L + ++ T E + S+ F KAVD
Sbjct: 242 FSGKGYIIQKREIKPCLEADKPVEDILTYEEF----HPFLFSQHSQCPYIEFESFDKAVD 297
Query: 236 DFRHKARENKFIVRDFQYNEEEMK----ADKEEMNRLSTDKKKQ 275
+F K K ++ Q ++ +K K+ NRL ++ Q
Sbjct: 298 EFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQ 341
>gi|19526773 Apg3p [Homo sapiens]
Length = 314
Score = 28.9 bits (63), Expect = 8.1
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 65 VEGVVKKVAQYMADVLEDSKDK-----VQENLLANGVDLVTYITRFQW 107
V+G +VA+Y+ VL++SK K E +A G LV + +QW
Sbjct: 8 VKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQW 55
>gi|120953300 leucine-rich repeats and IQ motif containing 1 isoform
1 [Homo sapiens]
Length = 1722
Score = 28.9 bits (63), Expect = 8.1
Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 9/133 (6%)
Query: 149 NLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMV 208
N+Q E+ L + E + K+ F EY+ L + + + + Q E +
Sbjct: 223 NIQKQEQDKMNDELYKE--EKIWKEKFKQHEEYIRNLHLQMEE-ERTRFKDQQEKEKNSL 279
Query: 209 VPRSSNVLSEDQDSYLCNVT------LFRKAVDDFRHKARENKFIVRDFQYNEEEMKADK 262
+ + +N + Q Y V + ++ ++ + KA+E K + EEE +
Sbjct: 280 LKQQNNAAVKIQAKYKAFVAYQKYGPIIKEQIESKKRKAQEWKEKEAKIRQKEEENRKRL 339
Query: 263 EEMNRLSTDKKKQ 275
EE R+ ++KKQ
Sbjct: 340 EEEQRIKEERKKQ 352
>gi|120953243 leucine-rich repeats and IQ motif containing 1 isoform
2 [Homo sapiens]
Length = 1336
Score = 28.9 bits (63), Expect = 8.1
Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 9/133 (6%)
Query: 149 NLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMV 208
N+Q E+ L + E + K+ F EY+ L + + + + Q E +
Sbjct: 223 NIQKQEQDKMNDELYKE--EKIWKEKFKQHEEYIRNLHLQMEE-ERTRFKDQQEKEKNSL 279
Query: 209 VPRSSNVLSEDQDSYLCNVT------LFRKAVDDFRHKARENKFIVRDFQYNEEEMKADK 262
+ + +N + Q Y V + ++ ++ + KA+E K + EEE +
Sbjct: 280 LKQQNNAAVKIQAKYKAFVAYQKYGPIIKEQIESKKRKAQEWKEKEAKIRQKEEENRKRL 339
Query: 263 EEMNRLSTDKKKQ 275
EE R+ ++KKQ
Sbjct: 340 EEEQRIKEERKKQ 352
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,601,017
Number of Sequences: 37866
Number of extensions: 492013
Number of successful extensions: 1720
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1694
Number of HSP's gapped (non-prelim): 43
length of query: 382
length of database: 18,247,518
effective HSP length: 104
effective length of query: 278
effective length of database: 14,309,454
effective search space: 3978028212
effective search space used: 3978028212
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.