Search of human proteins with 4501993

Search of human proteins with 4501993

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4501993 alkyldihydroxyacetone phosphate synthase precursor
[Homo sapiens]
         (658 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4501993 alkyldihydroxyacetone phosphate synthase precursor [H...  1341   0.0  
gi|37595756 D-lactate dehydrogenase isoform 2 precursor [Homo sa...    97   5e-20
gi|37595754 D-lactate dehydrogenase isoform 1 precursor [Homo sa...    91   3e-18
gi|119964728 D-2-hydroxyglutarate dehydrogenase precursor [Homo ...    75   1e-13
gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo ...    34   0.37 
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]            33   0.64 
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ...    33   0.64 
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ...    33   0.64 
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]             33   0.83 
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]              33   0.83 
gi|5729929 matrix metalloproteinase 24 preproprotein [Homo sapiens]    32   1.4  
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa...    31   4.1  
gi|7661892 REST corepressor 1 [Homo sapiens]                           30   7.1  
gi|239754420 PREDICTED: hypothetical protein [Homo sapiens]            30   7.1  
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]           30   7.1  
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]           30   7.1  
gi|239742965 PREDICTED: hypothetical protein XP_002342706 [Homo ...    30   7.1  
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]           30   7.1  
gi|116734702 homeobox D13 [Homo sapiens]                               30   9.2  
gi|62865604 tripartite motif protein 31 [Homo sapiens]                 30   9.2  
gi|29029595 glutamate receptor KA1 precursor [Homo sapiens]            30   9.2  
gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens]    30   9.2  
gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens]     30   9.2  
gi|170784831 chromosome 1 open reading frame 9 protein isoform 2...    30   9.2  
gi|7656940 chromosome 1 open reading frame 9 protein isoform 1 [...    30   9.2  
gi|31542255 hypothetical protein LOC140706 [Homo sapiens]              30   9.2  
gi|24497464 Shaw-related voltage-gated potassium channel protein...    30   9.2  

>gi|4501993 alkyldihydroxyacetone phosphate synthase precursor [Homo
           sapiens]
          Length = 658

 Score = 1341 bits (3471), Expect = 0.0
 Identities = 658/658 (100%), Positives = 658/658 (100%)

Query: 1   MAEAAAAAGGTGLGAGASYGSAADRDRDPDPDRAGRRLRVLSGHLLGRPREALSTNECKA 60
           MAEAAAAAGGTGLGAGASYGSAADRDRDPDPDRAGRRLRVLSGHLLGRPREALSTNECKA
Sbjct: 1   MAEAAAAAGGTGLGAGASYGSAADRDRDPDPDRAGRRLRVLSGHLLGRPREALSTNECKA 60

Query: 61  RRAASAATAAPTATPAAQESGTIPKKRQEVMKWNGWGYNDSKFIFNKKGQIELTGKRYPL 120
           RRAASAATAAPTATPAAQESGTIPKKRQEVMKWNGWGYNDSKFIFNKKGQIELTGKRYPL
Sbjct: 61  RRAASAATAAPTATPAAQESGTIPKKRQEVMKWNGWGYNDSKFIFNKKGQIELTGKRYPL 120

Query: 121 SGMGLPTFKEWIQNTLGVNVEHKTTSKASLNPSDTPPSVVNEDFLHDLKETNISYSQEAD 180
           SGMGLPTFKEWIQNTLGVNVEHKTTSKASLNPSDTPPSVVNEDFLHDLKETNISYSQEAD
Sbjct: 121 SGMGLPTFKEWIQNTLGVNVEHKTTSKASLNPSDTPPSVVNEDFLHDLKETNISYSQEAD 180

Query: 181 DRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTS 240
           DRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTS
Sbjct: 181 DRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTS 240

Query: 241 VSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGH 300
           VSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGH
Sbjct: 241 VSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGH 300

Query: 301 EPDSLEFSTVGGWVSTRASGMKKNIYGNIEDLVVHIKMVTPRGIIEKSCQGPRMSTGPDI 360
           EPDSLEFSTVGGWVSTRASGMKKNIYGNIEDLVVHIKMVTPRGIIEKSCQGPRMSTGPDI
Sbjct: 301 EPDSLEFSTVGGWVSTRASGMKKNIYGNIEDLVVHIKMVTPRGIIEKSCQGPRMSTGPDI 360

Query: 361 HHFIMGSEGTLGVITEATIKIRPVPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRL 420
           HHFIMGSEGTLGVITEATIKIRPVPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRL
Sbjct: 361 HHFIMGSEGTLGVITEATIKIRPVPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRL 420

Query: 421 MDNKQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDREKVLQH 480
           MDNKQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDREKVLQH
Sbjct: 421 MDNKQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDREKVLQH 480

Query: 481 EKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFETSAPWDRVVDL 540
           EKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFETSAPWDRVVDL
Sbjct: 481 EKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFETSAPWDRVVDL 540

Query: 541 CRNVKERITRECKEKGVQFAPFSTCRVTQTYDAGACIYFYFAFNYRGISDPLTVFEQTEA 600
           CRNVKERITRECKEKGVQFAPFSTCRVTQTYDAGACIYFYFAFNYRGISDPLTVFEQTEA
Sbjct: 541 CRNVKERITRECKEKGVQFAPFSTCRVTQTYDAGACIYFYFAFNYRGISDPLTVFEQTEA 600

Query: 601 AAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKEYVDPNNIFGNRNLL 658
           AAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKEYVDPNNIFGNRNLL
Sbjct: 601 AAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKEYVDPNNIFGNRNLL 658


>gi|37595756 D-lactate dehydrogenase isoform 2 precursor [Homo
           sapiens]
          Length = 484

 Score = 97.1 bits (240), Expect = 5e-20
 Identities = 103/461 (22%), Positives = 193/461 (41%), Gaps = 50/461 (10%)

Query: 206 PDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNR 265
           PD V+WP   + V ++  L  +  + IIP G GT +  G+       +  + ++ + M+R
Sbjct: 66  PDAVVWPQNVEQVSRLAALCYRQGVPIIPFGTGTGLEGGVCA----VQGGVCVNLTHMDR 121

Query: 266 ILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWVSTRASGMKKNI 325
           IL +++ + +  VE G+T + L   L++SG     +P +   +++ G  +T ASG     
Sbjct: 122 ILELNQEDFSVVVEPGVTRKALNAHLRDSGLWFPVDPGA--DASLCGMAATGASGTNAVR 179

Query: 326 YGNIEDLVVHIKMVTPRG-IIEKSCQGP---RMSTGPDIHHFIMGSEGTLGVITEATIKI 381
           YG + D V+++++V P G ++  + +G    + + G ++    +GSEGTLG+IT  T+++
Sbjct: 180 YGTMRDNVLNLEVVLPDGRLLHTAGRGRHFRKSAAGYNLTGLFVGSEGTLGLITATTLRL 239

Query: 382 RPVPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNKQFQFGHALKPQVSSIFT 441
            P PE     + AFP+ +  V                           H L+  V     
Sbjct: 240 HPAPEATVAATCAFPSVQAAVDSTV-----------------------HILQAAVPVARI 276

Query: 442 SFLDGLKKFYITKFKGFDPNQLSVATLLFEGDREKVLQHEKQVYDIAAKFGG--LAAGED 499
            FLD +      ++   +        L F G ++ + +  ++  +I  + G    +  ++
Sbjct: 277 EFLDEVMMDACNRYSKLNCLVAPTLFLEFHGSQQALEEQLQRTEEIVQQNGASDFSWAKE 336

Query: 500 NGQRGYLLTYVI-AYIRDLALEYYVLGESFETSAPWDRVVDLCRNVKERITRECKEKGVQ 558
             +R  L T    A+   LA      G S +   P  R+ ++    KE +        + 
Sbjct: 337 AEERSRLWTARHNAWYAALATRPGCKGYSTDVCVPISRLPEIVVQTKEDLNASGLTGSI- 395

Query: 559 FAPFSTCRVTQTYDAGA-CIYFYFAFNYRGISDPLTVFEQTEAAAREEILANGGSLSHHH 617
                   V    D    CI      +   +       EQ    A    LA  G+ +  H
Sbjct: 396 --------VGHVGDGNFHCILLVNPDDAEELGRVKAFAEQLGRRA----LALHGTCTGEH 443

Query: 618 GVGKLRKQWLKESISDVGFGMLKSVKEYVDPNNIFGNRNLL 658
           G+G  ++Q L+E +  VG   ++ +K  +DP  +     +L
Sbjct: 444 GIGMGKRQLLQEEVGAVGVETMRQLKAVLDPQGLMNPGKVL 484


>gi|37595754 D-lactate dehydrogenase isoform 1 precursor [Homo
           sapiens]
          Length = 507

 Score = 90.9 bits (224), Expect = 3e-18
 Identities = 106/484 (21%), Positives = 193/484 (39%), Gaps = 73/484 (15%)

Query: 206 PDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNR 265
           PD V+WP   + V ++  L  +  + IIP G GT +  G+       +  + ++ + M+R
Sbjct: 66  PDAVVWPQNVEQVSRLAALCYRQGVPIIPFGTGTGLEGGVCA----VQGGVCVNLTHMDR 121

Query: 266 ILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWVSTRASGMKKNI 325
           IL +++ + +  VE G+T + L   L++SG     +P +   +++ G  +T ASG     
Sbjct: 122 ILELNQEDFSVVVEPGVTRKALNAHLRDSGLWFPVDPGA--DASLCGMAATGASGTNAVR 179

Query: 326 YGNIEDLVVHIKMVTPRG-IIEKSCQGPRMSTG--PDIHH-------------------- 362
           YG + D V+++++V P G ++  + +G     G  P+I H                    
Sbjct: 180 YGTMRDNVLNLEVVLPDGRLLHTAGRGRHFRFGFWPEIPHHTAWYSPCVSLGRRKSAAGY 239

Query: 363 ----FIMGSEGTLGVITEATIKIRPVPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASI 418
                 +GSEGTLG+IT  T+++ P PE     + AFP+ +  V                
Sbjct: 240 NLTGLFVGSEGTLGLITATTLRLHPAPEATVAATCAFPSVQAAVDSTV------------ 287

Query: 419 RLMDNKQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDREKVL 478
                      H L+  V      FLD +      ++   +        L F G ++ + 
Sbjct: 288 -----------HILQAAVPVARIEFLDEVMMDACNRYSKLNCLVAPTLFLEFHGSQQALE 336

Query: 479 QHEKQVYDIAAKFGG--LAAGEDNGQRGYLLTYVI-AYIRDLALEYYVLGESFETSAPWD 535
           +  ++  +I  + G    +  ++  +R  L T    A+   LA      G S +   P  
Sbjct: 337 EQLQRTEEIVQQNGASDFSWAKEAEERSRLWTARHNAWYAALATRPGCKGYSTDVCVPIS 396

Query: 536 RVVDLCRNVKERITRECKEKGVQFAPFSTCRVTQTYDAGA-CIYFYFAFNYRGISDPLTV 594
           R+ ++    KE +        +         V    D    CI      +   +      
Sbjct: 397 RLPEIVVQTKEDLNASGLTGSI---------VGHVGDGNFHCILLVNPDDAEELGRVKAF 447

Query: 595 FEQTEAAAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKEYVDPNNIFGN 654
            EQ    A    LA  G+ +  HG+G  ++Q L+E +  VG   ++ +K  +DP  +   
Sbjct: 448 AEQLGRRA----LALHGTCTGEHGIGMGKRQLLQEEVGAVGVETMRQLKAVLDPQGLMNP 503

Query: 655 RNLL 658
             +L
Sbjct: 504 GKVL 507


>gi|119964728 D-2-hydroxyglutarate dehydrogenase precursor [Homo
           sapiens]
          Length = 521

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 5/194 (2%)

Query: 208 IVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRIL 267
           ++L P   ++V  I+    + NL + P GG T +  G +   DE    I L T++MNR+L
Sbjct: 102 VLLRPRTSEEVSHILRHCHERNLAVNPQGGNTGMVGGSVPVFDE----IILSTARMNRVL 157

Query: 268 WVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWVSTRASGMKKNIYG 327
                +     +AG   +EL R ++E  +    +  +     +GG V+T A G++   YG
Sbjct: 158 SFHSVSGILVCQAGCVLEELSRYVEERDFIMPLDLGAKGSCHIGGNVATNAGGLRFLRYG 217

Query: 328 NIEDLVVHIKMVTPRGIIEKSCQGPRM-STGPDIHHFIMGSEGTLGVITEATIKIRPVPE 386
           ++   V+ +++V   G +       R  +TG D+    +GSEGTLG+IT  +I   P P 
Sbjct: 218 SLHGTVLGLEVVLADGTVLDCLTSLRKDNTGYDLKQLFIGSEGTLGIITTVSILCPPKPR 277

Query: 387 YQKYGSVAFPNFEQ 400
                 +  P F +
Sbjct: 278 AVNVAFLGCPGFAE 291


>gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo
           sapiens]
          Length = 306

 Score = 34.3 bits (77), Expect = 0.37
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 8   AGGTGLGAGASYGSAAD----RDRDPDPDRAGRRLRVLSGHLLGRPREALSTNECKARRA 63
           AGGTG   G+    +AD    +DR+ +  +  RR    +G   G     + T     +R 
Sbjct: 221 AGGTGQRRGSRSSPSADQQRAQDREEEAAQPQRRPAGGTGQRRGTAAAPVPTTGGTGQRR 280

Query: 64  ASAATAAPTATPAAQESGT 82
            +AA  APT+T   Q  G+
Sbjct: 281 GTAAAPAPTSTGTGQRRGS 299


>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 294

 Score = 33.5 bits (75), Expect = 0.64
 Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 22/105 (20%)

Query: 6   AAAGGTGLGAGASYGSAADRDRDPDPDRAGRRLRVLSG-HLLG----------------- 47
           A AGG+ L  G ++  ++ R   P P+R  RR R   G H  G                 
Sbjct: 44  APAGGSPLAVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGP 103

Query: 48  ----RPREALSTNECKARRAASAATAAPTATPAAQESGTIPKKRQ 88
               R R   +    +    A+   AAP A P A +  T+P  R+
Sbjct: 104 VARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRK 148


>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
           sapiens]
          Length = 315

 Score = 33.5 bits (75), Expect = 0.64
 Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 22/105 (20%)

Query: 6   AAAGGTGLGAGASYGSAADRDRDPDPDRAGRRLRVLSG-HLLG----------------- 47
           A AGG+ L  G ++  ++ R   P P+R  RR R   G H  G                 
Sbjct: 44  APAGGSPLAVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGP 103

Query: 48  ----RPREALSTNECKARRAASAATAAPTATPAAQESGTIPKKRQ 88
               R R   +    +    A+   AAP A P A +  T+P  R+
Sbjct: 104 VARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRK 148


>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
           sapiens]
          Length = 315

 Score = 33.5 bits (75), Expect = 0.64
 Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 22/105 (20%)

Query: 6   AAAGGTGLGAGASYGSAADRDRDPDPDRAGRRLRVLSG-HLLG----------------- 47
           A AGG+ L  G ++  ++ R   P P+R  RR R   G H  G                 
Sbjct: 44  APAGGSPLAVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGP 103

Query: 48  ----RPREALSTNECKARRAASAATAAPTATPAAQESGTIPKKRQ 88
               R R   +    +    A+   AAP A P A +  T+P  R+
Sbjct: 104 VARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRK 148


>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
          Length = 694

 Score = 33.1 bits (74), Expect = 0.83
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 7/55 (12%)

Query: 121 SGMGLPTFKEWIQNTLGVNVEHKT-TSKASLNPSDTPPSVVNEDFLHDLKETNIS 174
           +G   P  K W++  +G   +HKT   K +LNP        NE+F +D+K ++++
Sbjct: 583 NGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE------FNEEFFYDIKHSDLA 631


>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
          Length = 690

 Score = 33.1 bits (74), Expect = 0.83
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 7/55 (12%)

Query: 121 SGMGLPTFKEWIQNTLGVNVEHKT-TSKASLNPSDTPPSVVNEDFLHDLKETNIS 174
           +G   P  K W++  +G   +HKT   K +LNP        NE+F +D+K ++++
Sbjct: 579 NGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE------FNEEFFYDIKHSDLA 627


>gi|5729929 matrix metalloproteinase 24 preproprotein [Homo sapiens]
          Length = 645

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 48/196 (24%), Positives = 75/196 (38%), Gaps = 29/196 (14%)

Query: 4   AAAAAGGTGLGAGASYGSAADRDRDPDPDRAGRRLRVLSGHLLGRPREALSTNECKARRA 63
           A AAA   G G  A+   A  R  + +   AG+      G+LL     A + +  KA ++
Sbjct: 50  ARAAAAAAGAGNRAAVAVAVARADEAEAPFAGQNWLKSYGYLLPYDSRASALHSAKALQS 109

Query: 64  ASAATAAPTATPAAQESGTIPKKRQEVMKWNGWGYNDSKFIFNKKGQIELTGKRYPLSGM 123
           A +        P    +G + +   E MK    G  D   +  ++       KRY L+G 
Sbjct: 110 AVSTMQQFYGIPV---TGVLDQTTIEWMKKPRCGVPDHPHLSRRR-----RNKRYALTG- 160

Query: 124 GLPTFKEWIQNTLGVNVEHKT-------TSKASLNPSD----TPPSVVNEDFLHDLKETN 172
                ++W Q  +  ++ + T       T KA     D      P    E   H++K   
Sbjct: 161 -----QKWRQKHITYSIHNYTPKVGELDTRKAIRQAFDVWQKVTPLTFEEVPYHEIK--- 212

Query: 173 ISYSQEADDRVFRAHG 188
            S  +EAD  +F A G
Sbjct: 213 -SDRKEADIMIFFASG 227


>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
           sapiens]
          Length = 2715

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 13/42 (30%), Positives = 25/42 (59%)

Query: 48  RPREALSTNECKARRAASAATAAPTATPAAQESGTIPKKRQE 89
           +PREA  T E K +R+ + + A   +  A++E G  P ++++
Sbjct: 156 KPREASGTKEAKEKRSCTDSAARTKSRKASKEQGPTPVEKKK 197


>gi|7661892 REST corepressor 1 [Homo sapiens]
          Length = 482

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 17/37 (45%), Positives = 21/37 (56%)

Query: 41 LSGHLLGRPREALSTNECKARRAASAATAAPTATPAA 77
          +SG   GR   A S +   A  AASAA A+P AT A+
Sbjct: 8  VSGKRRGRNNAAASASAAAASAAASAACASPAATAAS 44


>gi|239754420 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 105

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 25/82 (30%)

Query: 3  EAAAAAGGTGLGAGASYGSAADRDRDPDPDRAGRRLRVLSGHLLGRPREALSTNECKARR 62
          EA AA   T  G   ++ +A      P+P  AGR+LR         PRE LST       
Sbjct: 26 EARAAQEPTERGEAQAWRAAG-----PEPCPAGRQLR---------PREKLST------- 64

Query: 63 AASAATAAPTATPAAQESGTIP 84
              A A P ATP     G  P
Sbjct: 65 ----AAAGPGATPLTARGGGAP 82


>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
          Length = 346

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 22  AADRDRDPDPDRAGRRLRVLSGHLLGRPREALSTNECKARRAASAATAAPTATPAAQESG 81
           A  R+R       G  LR  +    GR + A +T         SAATAAP  TPA+   G
Sbjct: 64  APPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGN---SAATAAPHPTPASYPQG 120

Query: 82  TI 83
           TI
Sbjct: 121 TI 122


>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
          Length = 346

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 22  AADRDRDPDPDRAGRRLRVLSGHLLGRPREALSTNECKARRAASAATAAPTATPAAQESG 81
           A  R+R       G  LR  +    GR + A +T         SAATAAP  TPA+   G
Sbjct: 64  APPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGN---SAATAAPHPTPASYPQG 120

Query: 82  TI 83
           TI
Sbjct: 121 TI 122


>gi|239742965 PREDICTED: hypothetical protein XP_002342706 [Homo
          sapiens]
          Length = 105

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 25/82 (30%)

Query: 3  EAAAAAGGTGLGAGASYGSAADRDRDPDPDRAGRRLRVLSGHLLGRPREALSTNECKARR 62
          EA AA   T  G   ++ +A      P+P  AGR+LR         PRE LST       
Sbjct: 26 EARAAQEPTERGEAQAWRAAG-----PEPCPAGRQLR---------PREKLST------- 64

Query: 63 AASAATAAPTATPAAQESGTIP 84
              A A P ATP     G  P
Sbjct: 65 ----AAAGPGATPLTARGGGAP 82


>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
          Length = 346

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 22  AADRDRDPDPDRAGRRLRVLSGHLLGRPREALSTNECKARRAASAATAAPTATPAAQESG 81
           A  R+R       G  LR  +    GR + A +T         SAATAAP  TPA+   G
Sbjct: 64  APPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGN---SAATAAPHPTPASYPQG 120

Query: 82  TI 83
           TI
Sbjct: 121 TI 122


>gi|116734702 homeobox D13 [Homo sapiens]
          Length = 343

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 2   AEAAAAAGGTGLGAGASYGSAADRDRDPDPDRAGRRLRVLSGHLLGRPREALSTNECKAR 61
           A AAAAA      +G +Y   ++R        +       S  +  RP EA    EC A 
Sbjct: 59  AAAAAAAAAAAAASGFAYPGTSERTGSSSSSSS-------SAVVAARP-EAPPAKECPAP 110

Query: 62  RAASAATAAPTA 73
             A+AA A P+A
Sbjct: 111 TPAAAAAAPPSA 122


>gi|62865604 tripartite motif protein 31 [Homo sapiens]
          Length = 425

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 12/108 (11%)

Query: 197 LREGMF-ERIPDIVLWPTCHDDVVKIVNLACKYNLCI--IPIGGGTSVSYGLMCPADETR 253
           +  G F  ++ + V+ P C D + K V + C +N C+  I   G TS  +   CP    +
Sbjct: 1   MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGF-FKCPL--CK 57

Query: 254 TIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHE 301
           T +  +  + N +L     NL   ++A +   E++ + KE+  C  H+
Sbjct: 58  TSVRKNAIRFNSLL----RNLVEKIQA-LQASEVQSKRKEA-TCPRHQ 99


>gi|29029595 glutamate receptor KA1 precursor [Homo sapiens]
          Length = 956

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 260 TSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWVSTRAS 319
           TS MN +  V+   LT H+E    GQ     LK   +          F  +G W      
Sbjct: 345 TSLMNYLRMVELEGLTGHIEFNSKGQRSNYALKILQFTRN------GFRQIGQWHVAEGL 398

Query: 320 GMKKNIY-GNIEDLVVHIKMV 339
            M  ++Y  NI D + +  +V
Sbjct: 399 SMDSHLYASNISDTLFNTTLV 419


>gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens]
          Length = 516

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 21/78 (26%)

Query: 6   AAAGGTGLGAGASYGSAADRDRDPDPDRAGRRLRVLSGHLLGRPREALSTNECKA----R 61
           A AGG GL AG  YG A +    P P  A                 AL+T E  A     
Sbjct: 236 ACAGGPGLPAGELYGWAVETTPSPGPQPA-----------------ALTTGEAAAPESPH 278

Query: 62  RAASAATAAPTATPAAQE 79
           +A    + +P+A  A QE
Sbjct: 279 QAEPYLSPSPSACTAVQE 296


>gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens]
          Length = 503

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 21/78 (26%)

Query: 6   AAAGGTGLGAGASYGSAADRDRDPDPDRAGRRLRVLSGHLLGRPREALSTNECKA----R 61
           A AGG GL AG  YG A +    P P  A                 AL+T E  A     
Sbjct: 223 ACAGGPGLPAGELYGWAVETTPSPGPQPA-----------------ALTTGEAAAPESPH 265

Query: 62  RAASAATAAPTATPAAQE 79
           +A    + +P+A  A QE
Sbjct: 266 QAEPYLSPSPSACTAVQE 283


>gi|170784831 chromosome 1 open reading frame 9 protein isoform 2
           [Homo sapiens]
          Length = 1210

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 105 FNKKGQIELTGKRYPLSGMGLPTFKEWIQNTLGVNVEHKTTSKASLN 151
           + K G I+ T    P     +PTF EW +  + V  E   +  AS N
Sbjct: 211 YTKPGDIDPTSVASPKDPEDIPTFDEWKKKVMEVEKEKSQSMHASSN 257


>gi|7656940 chromosome 1 open reading frame 9 protein isoform 1
           [Homo sapiens]
          Length = 1254

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 105 FNKKGQIELTGKRYPLSGMGLPTFKEWIQNTLGVNVEHKTTSKASLN 151
           + K G I+ T    P     +PTF EW +  + V  E   +  AS N
Sbjct: 248 YTKPGDIDPTSVASPKDPEDIPTFDEWKKKVMEVEKEKSQSMHASSN 294


>gi|31542255 hypothetical protein LOC140706 [Homo sapiens]
          Length = 433

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 5/105 (4%)

Query: 142 HKTTSKASLNPSDTPPSVVNEDFLHDLKETNISYSQEADDRVFRAHGHCLHEIFLLREGM 201
           H T   +SLNPS     +   D    LKE  +  + E  D +      CL   +   E +
Sbjct: 70  HLTWVTSSLNPSSRDELLQLLDTARQLKELPLKTTAE-QDSILSLSARCLLLTWRDNEEL 128

Query: 202 FERIP--DIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYG 244
             RIP  +I       DD + +  L  K  L + P+  G   S G
Sbjct: 129 ILRIPTHEIAAASYLQDDALHL--LVLKTGLGVDPVPAGVDASPG 171


>gi|24497464 Shaw-related voltage-gated potassium channel protein 4
           isoform b [Homo sapiens]
          Length = 582

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 48  RPREALSTNECKARRAASAATAAPTATPAAQESGTIPKKRQ-EVMKWNG 95
           RP +  S   CK+   +   +     +P A+E G I +KR  E+  W G
Sbjct: 498 RPAQLESPMYCKSEETSPRDSTCSDTSPPAREEGMIERKRAGEIRGWEG 546


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,296,210
Number of Sequences: 37866
Number of extensions: 1153841
Number of successful extensions: 3617
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3591
Number of HSP's gapped (non-prelim): 32
length of query: 658
length of database: 18,247,518
effective HSP length: 109
effective length of query: 549
effective length of database: 14,120,124
effective search space: 7751948076
effective search space used: 7751948076
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.