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Search of human proteins with 42734438
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42734438 hypothetical protein LOC51571 [Homo sapiens]
(324 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42734438 hypothetical protein LOC51571 [Homo sapiens] 645 0.0
gi|13540580 family with sequence similarity 49, member A [Homo s... 514 e-146
gi|24307969 cytoplasmic FMR1 interacting protein 1 isoform a [Ho... 35 0.12
gi|110611218 ribosome binding protein 1 [Homo sapiens] 33 0.45
gi|110611220 ribosome binding protein 1 [Homo sapiens] 33 0.45
gi|116805788 cytoplasmic FMR1 interacting protein 2 [Homo sapiens] 32 1.0
gi|82617634 cytoplasmic FMR1 interacting protein 2 [Homo sapiens] 32 1.0
gi|82617630 cytoplasmic FMR1 interacting protein 2 [Homo sapiens] 32 1.0
gi|54633317 thioredoxin domain containing 11 [Homo sapiens] 30 2.9
gi|57242774 hypothetical protein LOC9703 [Homo sapiens] 30 3.8
gi|57768564 hypothetical protein LOC23281 isoform b [Homo sapiens] 30 3.8
gi|140161498 hypothetical protein LOC23281 isoform a [Homo sapiens] 30 3.8
gi|118498362 kinectin 1 isoform b [Homo sapiens] 29 5.0
gi|118498356 kinectin 1 isoform a [Homo sapiens] 29 5.0
gi|118498368 kinectin 1 isoform c [Homo sapiens] 29 5.0
gi|33620775 kinectin 1 isoform a [Homo sapiens] 29 5.0
gi|5729840 tubulin, gamma complex associated protein 2 [Homo sap... 29 5.0
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 29 6.5
gi|224586823 coiled-coil domain containing 110 isoform b [Homo s... 28 8.5
gi|22749515 coiled-coil domain containing 110 isoform a [Homo sa... 28 8.5
gi|55770834 centromere protein F [Homo sapiens] 28 8.5
>gi|42734438 hypothetical protein LOC51571 [Homo sapiens]
Length = 324
Score = 645 bits (1665), Expect = 0.0
Identities = 324/324 (100%), Positives = 324/324 (100%)
Query: 1 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 60
MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG
Sbjct: 1 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 60
Query: 61 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQ 120
HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQ
Sbjct: 61 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQ 120
Query: 121 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 180
HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN
Sbjct: 121 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 180
Query: 181 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 240
NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY
Sbjct: 181 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 240
Query: 241 RSRFTNEETVSFCLRVMVGVIILYDHVHPVGAFAKTSKIDMKGCIKVLKDQPPNSVEGLL 300
RSRFTNEETVSFCLRVMVGVIILYDHVHPVGAFAKTSKIDMKGCIKVLKDQPPNSVEGLL
Sbjct: 241 RSRFTNEETVSFCLRVMVGVIILYDHVHPVGAFAKTSKIDMKGCIKVLKDQPPNSVEGLL 300
Query: 301 NALRYTTKHLNDETTSKQIKSMLQ 324
NALRYTTKHLNDETTSKQIKSMLQ
Sbjct: 301 NALRYTTKHLNDETTSKQIKSMLQ 324
>gi|13540580 family with sequence similarity 49, member A [Homo
sapiens]
Length = 323
Score = 514 bits (1324), Expect = e-146
Identities = 257/324 (79%), Positives = 292/324 (90%), Gaps = 1/324 (0%)
Query: 1 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 60
MGNLLKVLT ++E P+FFLDFENAQPTE E+EI+NQ++ VL+D+E IL DLQ+Y+GAG
Sbjct: 1 MGNLLKVLT-REIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAG 59
Query: 61 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQ 120
EIR+AIQ+P D +LQEKAW AV PLV +LK+FYEFS RLE AL+ LL +LT PY+PTQ
Sbjct: 60 PEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQ 119
Query: 121 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 180
HLEREQALAK+FAEILHFTLRFDELKM NPAIQNDFSYYRRT+SR RINN+ + ENEVN
Sbjct: 120 HLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVN 179
Query: 181 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 240
NE+ANRMSLFYAEATPMLKTLS+AT FVSENK LPIENTTDCLSTM SVC+VMLETPEY
Sbjct: 180 NEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEY 239
Query: 241 RSRFTNEETVSFCLRVMVGVIILYDHVHPVGAFAKTSKIDMKGCIKVLKDQPPNSVEGLL 300
RSRFT+EET+ FC+RVMVGVIILYDHVHPVGAF KTSKIDMKGCIKVLK+Q P+SVEGLL
Sbjct: 240 RSRFTSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDMKGCIKVLKEQAPDSVEGLL 299
Query: 301 NALRYTTKHLNDETTSKQIKSMLQ 324
NALR+TTKHLNDE+TSKQI++MLQ
Sbjct: 300 NALRFTTKHLNDESTSKQIRAMLQ 323
>gi|24307969 cytoplasmic FMR1 interacting protein 1 isoform a [Homo
sapiens]
Length = 1253
Score = 34.7 bits (78), Expect = 0.12
Identities = 58/282 (20%), Positives = 109/282 (38%), Gaps = 36/282 (12%)
Query: 17 PNFFLDFE--NAQPTE-----SEKEIYNQVNVVLKDAEGILEDLQSYRGAGHEIREAI-- 67
PNF +FE NA T + +++ +N +L++ + L ++R I +
Sbjct: 40 PNFNTNFEDRNAFVTGIARYIEQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIPQVKCN 99
Query: 68 QHPADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQHLEREQA 127
+ P ++ EK + P V KL F F + A+ G + ++ + +A
Sbjct: 100 EQPNRVEIYEKTVEVLEPEVTKLMNFMYFQRN---AIERFCGEVRRLCHAERRKDFVSEA 156
Query: 128 LAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVNNELANRM 187
+ ++ DELK +++ND S Y+R +R P + N +
Sbjct: 157 YLITLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRKMADPQSIQESQN------L 210
Query: 188 SLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEYRSRFTNE 247
S+F A + ++L +E + +A + + ++ E R T
Sbjct: 211 SMFLANHNKITQSLQQ------------QLEVISGYEELLADIVNLCVDYYENRMYLTPS 258
Query: 248 ETVSFCLRVMVGVIILYDHVHPVGAFAKTSKIDMKGCIKVLK 289
E L+VM + L D G+ + K+D K I + K
Sbjct: 259 EK-HMLLKVMGFGLYLMD-----GSVSNIYKLDAKKRINLSK 294
>gi|110611218 ribosome binding protein 1 [Homo sapiens]
Length = 977
Score = 32.7 bits (73), Expect = 0.45
Identities = 48/216 (22%), Positives = 89/216 (41%), Gaps = 20/216 (9%)
Query: 37 NQVNVVLKDAEGILEDLQSYRGAGHEIREAIQHPADEKLQEKAWGA--VVPLVGKLK--- 91
+Q +L + EG+L DLQ ++ A A+E+LQ+ + +V KLK
Sbjct: 696 DQYRSILAETEGMLRDLQKSVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGEL 755
Query: 92 ----KFYEFSQRLEAALRGLLGALTSTPYSPTQHLEREQALAKQFAEILHFTLRFDELKM 147
+ E + LEA L + A + + Q+ +E A +Q +L + D K
Sbjct: 756 ESSDQVREHTSHLEAELEKHMAAAS----AECQNYAKEVAGLRQL--LLESQSQLDAAKS 809
Query: 148 TNPAIQNDFSYYRRTLSRMRINNVPAEGENEVNNELANRMSLFYAEATPM-LKTLSDATT 206
++ + R+ LS M+ + + ++ A+ AE P+ LKT + T
Sbjct: 810 EAQKQSDELALVRQQLSEMKSH----VEDGDIAGAPASSPEAPPAEQDPVQLKTQLEWTE 865
Query: 207 KFVSENKNLPIENTTDCLSTMASVCRVMLETPEYRS 242
+ + + + T + S CR+ E + R+
Sbjct: 866 AILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRT 901
>gi|110611220 ribosome binding protein 1 [Homo sapiens]
Length = 977
Score = 32.7 bits (73), Expect = 0.45
Identities = 48/216 (22%), Positives = 89/216 (41%), Gaps = 20/216 (9%)
Query: 37 NQVNVVLKDAEGILEDLQSYRGAGHEIREAIQHPADEKLQEKAWGA--VVPLVGKLK--- 91
+Q +L + EG+L DLQ ++ A A+E+LQ+ + +V KLK
Sbjct: 696 DQYRSILAETEGMLRDLQKSVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGEL 755
Query: 92 ----KFYEFSQRLEAALRGLLGALTSTPYSPTQHLEREQALAKQFAEILHFTLRFDELKM 147
+ E + LEA L + A + + Q+ +E A +Q +L + D K
Sbjct: 756 ESSDQVREHTSHLEAELEKHMAAAS----AECQNYAKEVAGLRQL--LLESQSQLDAAKS 809
Query: 148 TNPAIQNDFSYYRRTLSRMRINNVPAEGENEVNNELANRMSLFYAEATPM-LKTLSDATT 206
++ + R+ LS M+ + + ++ A+ AE P+ LKT + T
Sbjct: 810 EAQKQSDELALVRQQLSEMKSH----VEDGDIAGAPASSPEAPPAEQDPVQLKTQLEWTE 865
Query: 207 KFVSENKNLPIENTTDCLSTMASVCRVMLETPEYRS 242
+ + + + T + S CR+ E + R+
Sbjct: 866 AILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRT 901
>gi|116805788 cytoplasmic FMR1 interacting protein 2 [Homo sapiens]
Length = 1253
Score = 31.6 bits (70), Expect = 1.0
Identities = 27/135 (20%), Positives = 57/135 (42%), Gaps = 5/135 (3%)
Query: 35 IYNQVNVVLKDAEGILEDLQSYRGAGHEIREAI--QHPADEKLQEKAWGAVVPLVGKLKK 92
+++ +N +L++ L ++R I + + P ++ EK + P V KL K
Sbjct: 65 VHSSMNEMLEEGHEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEVTKLMK 124
Query: 93 FYEFSQRLEAALRGLLGALTSTPYSPTQHLEREQALAKQFAEILHFTLRFDELKMTNPAI 152
F F ++ A+ + ++ + +A + ++ DELK ++
Sbjct: 125 FMYFQRK---AIERFCSEVKRLCHAERRKDFVSEAYLLTLGKFINMFAVLDELKNMKCSV 181
Query: 153 QNDFSYYRRTLSRMR 167
+ND S Y+R +R
Sbjct: 182 KNDHSAYKRAAQFLR 196
>gi|82617634 cytoplasmic FMR1 interacting protein 2 [Homo sapiens]
Length = 1253
Score = 31.6 bits (70), Expect = 1.0
Identities = 27/135 (20%), Positives = 57/135 (42%), Gaps = 5/135 (3%)
Query: 35 IYNQVNVVLKDAEGILEDLQSYRGAGHEIREAI--QHPADEKLQEKAWGAVVPLVGKLKK 92
+++ +N +L++ L ++R I + + P ++ EK + P V KL K
Sbjct: 65 VHSSMNEMLEEGHEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEVTKLMK 124
Query: 93 FYEFSQRLEAALRGLLGALTSTPYSPTQHLEREQALAKQFAEILHFTLRFDELKMTNPAI 152
F F ++ A+ + ++ + +A + ++ DELK ++
Sbjct: 125 FMYFQRK---AIERFCSEVKRLCHAERRKDFVSEAYLLTLGKFINMFAVLDELKNMKCSV 181
Query: 153 QNDFSYYRRTLSRMR 167
+ND S Y+R +R
Sbjct: 182 KNDHSAYKRAAQFLR 196
>gi|82617630 cytoplasmic FMR1 interacting protein 2 [Homo sapiens]
Length = 1253
Score = 31.6 bits (70), Expect = 1.0
Identities = 27/135 (20%), Positives = 57/135 (42%), Gaps = 5/135 (3%)
Query: 35 IYNQVNVVLKDAEGILEDLQSYRGAGHEIREAI--QHPADEKLQEKAWGAVVPLVGKLKK 92
+++ +N +L++ L ++R I + + P ++ EK + P V KL K
Sbjct: 65 VHSSMNEMLEEGHEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEVTKLMK 124
Query: 93 FYEFSQRLEAALRGLLGALTSTPYSPTQHLEREQALAKQFAEILHFTLRFDELKMTNPAI 152
F F ++ A+ + ++ + +A + ++ DELK ++
Sbjct: 125 FMYFQRK---AIERFCSEVKRLCHAERRKDFVSEAYLLTLGKFINMFAVLDELKNMKCSV 181
Query: 153 QNDFSYYRRTLSRMR 167
+ND S Y+R +R
Sbjct: 182 KNDHSAYKRAAQFLR 196
>gi|54633317 thioredoxin domain containing 11 [Homo sapiens]
Length = 958
Score = 30.0 bits (66), Expect = 2.9
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 121 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 180
HLERE + K AEI L+ +++ S RR R+R E ++ +
Sbjct: 802 HLERE--IQKLRAEI-------SSLQRAQVQVESQLSSARRDEHRLRQQQRALEEQHSLL 852
Query: 181 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENT 220
+ + ++ Y + T L+ L+ + ++NL ENT
Sbjct: 853 HAHSEQLQALYEQKTRELQELARKLQELADASENLLTENT 892
>gi|57242774 hypothetical protein LOC9703 [Homo sapiens]
Length = 2235
Score = 29.6 bits (65), Expect = 3.8
Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 12/157 (7%)
Query: 2 GNLLKVLTC-TDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 60
G+ LK T T L G +F E++ + ++++ +V + + + L+ +Q +G
Sbjct: 1616 GDTLKQKTSWTCLLDGMQYFATTESSPTEQDGRQLWLEVKNIEEHRQRSLDSVQELMESG 1675
Query: 61 HEIREAIQHPAD-----EKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTP 115
+ + D E Q + ++ + +S ++ L A P
Sbjct: 1676 QAVGGMVTTTTDWNQPAEAQQAQQVQRIISRCNCRMYYISYSHDIDPEL-----ATQIKP 1730
Query: 116 YSPTQHLEREQALAKQFAEILHFTLRFDELKM-TNPA 151
++ E+E L KQ + FTL EL++ TNPA
Sbjct: 1731 PEVLENQEKEDLLKKQEGAVDTFTLIHHELEISTNPA 1767
Score = 28.9 bits (63), Expect = 6.5
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 2 GNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAGH 61
G+L VL C + +LDF A +S K + QV I E L+ G
Sbjct: 2139 GDLNLVLPCLEYHNNTWTWLDFAMAVKRDSRKALVAQV---------IKEKLRLKSATGS 2189
Query: 62 EIREAIQHPADEKLQEK 78
E+R ++ +D +Q++
Sbjct: 2190 EVRGKLETKSDLNMQQQ 2206
>gi|57768564 hypothetical protein LOC23281 isoform b [Homo sapiens]
Length = 348
Score = 29.6 bits (65), Expect = 3.8
Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 5/146 (3%)
Query: 2 GNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAGH 61
G+ L + C EQ + + A E E + ++ D + +++L S H
Sbjct: 99 GDQLLSIRCQHQEQVEDLTASHDAAL-LEMENNHTVAITILQDDHDHKVQELMST----H 153
Query: 62 EIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQH 121
E+ + EKL+ V L + + + ++R E ALR +P QH
Sbjct: 154 ELEKKELEENFEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTEEQLEIALAPYQH 213
Query: 122 LEREQALAKQFAEILHFTLRFDELKM 147
LE + KQ E+ + + E K+
Sbjct: 214 LEEDMKSLKQVLEMKNQQIHEQEKKI 239
>gi|140161498 hypothetical protein LOC23281 isoform a [Homo sapiens]
Length = 1379
Score = 29.6 bits (65), Expect = 3.8
Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 5/146 (3%)
Query: 2 GNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAGH 61
G+ L + C EQ + + A E E + ++ D + +++L S H
Sbjct: 1130 GDQLLSIRCQHQEQVEDLTASHDAAL-LEMENNHTVAITILQDDHDHKVQELMST----H 1184
Query: 62 EIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQH 121
E+ + EKL+ V L + + + ++R E ALR +P QH
Sbjct: 1185 ELEKKELEENFEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTEEQLEIALAPYQH 1244
Query: 122 LEREQALAKQFAEILHFTLRFDELKM 147
LE + KQ E+ + + E K+
Sbjct: 1245 LEEDMKSLKQVLEMKNQQIHEQEKKI 1270
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 29.3 bits (64), Expect = 5.0
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 21 LDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAGHEIREAIQHPADEKLQEKAW 80
L E Q +E+ Q+ V L++AE E++QSY EA Q K K
Sbjct: 469 LQQEEVQKKNAEQAA-TQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKE- 526
Query: 81 GAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQHLEREQALAKQFAEIL 136
V L KL Q+LE L L+ S + + +E++L Q +IL
Sbjct: 527 NEVQSLHSKLTDTLVSKQQLEQRLMQLM-------ESEQKRVNKEESLQMQVQDIL 575
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 29.3 bits (64), Expect = 5.0
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 21 LDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAGHEIREAIQHPADEKLQEKAW 80
L E Q +E+ Q+ V L++AE E++QSY EA Q K K
Sbjct: 469 LQQEEVQKKNAEQAA-TQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKE- 526
Query: 81 GAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQHLEREQALAKQFAEIL 136
V L KL Q+LE L L+ S + + +E++L Q +IL
Sbjct: 527 NEVQSLHSKLTDTLVSKQQLEQRLMQLM-------ESEQKRVNKEESLQMQVQDIL 575
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 29.3 bits (64), Expect = 5.0
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 21 LDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAGHEIREAIQHPADEKLQEKAW 80
L E Q +E+ Q+ V L++AE E++QSY EA Q K K
Sbjct: 469 LQQEEVQKKNAEQAA-TQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKE- 526
Query: 81 GAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQHLEREQALAKQFAEIL 136
V L KL Q+LE L L+ S + + +E++L Q +IL
Sbjct: 527 NEVQSLHSKLTDTLVSKQQLEQRLMQLM-------ESEQKRVNKEESLQMQVQDIL 575
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 29.3 bits (64), Expect = 5.0
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 21 LDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAGHEIREAIQHPADEKLQEKAW 80
L E Q +E+ Q+ V L++AE E++QSY EA Q K K
Sbjct: 469 LQQEEVQKKNAEQAA-TQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKE- 526
Query: 81 GAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQHLEREQALAKQFAEIL 136
V L KL Q+LE L L+ S + + +E++L Q +IL
Sbjct: 527 NEVQSLHSKLTDTLVSKQQLEQRLMQLM-------ESEQKRVNKEESLQMQVQDIL 575
>gi|5729840 tubulin, gamma complex associated protein 2 [Homo
sapiens]
Length = 902
Score = 29.3 bits (64), Expect = 5.0
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 15/115 (13%)
Query: 128 LAKQFAEILHFTLRFDE-LKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVNNELANR 186
L K F++++ + F ++ +++ D +TL + +PA E ELA +
Sbjct: 744 LLKVFSKLMSVCVMFTNCMQKFTQSMKLDGELGGQTLEHSTVLGLPAGAEERARKELARK 803
Query: 187 MSLFYAEATPMLKTLSDATTKFVSENKN-----------LPIENTTDCLSTMASV 230
+A+ ++ KF +KN L I +T+DC MASV
Sbjct: 804 HLAEHADTVQLVSGFEATINKF---DKNFSAHLLDLLARLSIYSTSDCEHGMASV 855
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 28.9 bits (63), Expect = 6.5
Identities = 44/208 (21%), Positives = 80/208 (38%), Gaps = 32/208 (15%)
Query: 26 AQPTESEKEIYNQVN--------VVLKDAEGILEDLQSYRG--------AGHEIR----- 64
A+ TE K++ Q+ + KD EG++ LQ Y G A +E R
Sbjct: 586 AKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDE 645
Query: 65 -EAIQHPADEKLQEKAWGAVVPL--------VGKLKKFYEFSQRLEAALRGLLGALTSTP 115
E + E QE+ +V + + +L+ + + A+L+ G L++
Sbjct: 646 KETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYE 705
Query: 116 YSPTQHLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEG 175
L A A Q E L R +L+ + A+Q + R+ L +E
Sbjct: 706 AELEARLNLRDAEANQLKEELEKVTRLTQLEQS--ALQAELEKERQALKNALGKAQFSEE 763
Query: 176 ENEVNNELANRMSLFYAEATPMLKTLSD 203
+ + N+EL ++ + + + L D
Sbjct: 764 KEQENSELHAKLKHLQDDNNLLKQQLKD 791
>gi|224586823 coiled-coil domain containing 110 isoform b [Homo
sapiens]
Length = 796
Score = 28.5 bits (62), Expect = 8.5
Identities = 30/166 (18%), Positives = 70/166 (42%), Gaps = 12/166 (7%)
Query: 31 SEKEIYNQVNVVLKDAEGILEDLQSYRGAGHEIREAIQHPADEKLQEKAWGAVVPLVGKL 90
SE E ++VN V + ++ LQ+Y +I++ + E L K+ + PL+
Sbjct: 372 SENEKTSKVNSVTEQCVAKIQYLQNYLKESVQIQKKVMELESENLNLKS--KMKPLIFTT 429
Query: 91 KKFYEFSQRLEAALRGLLGALTSTPYSPTQHLEREQALAKQFAEILHFTLRFDELKMTNP 150
+ + + E L+ L+ ++ ++ E + K+F +I+ +++ L+ N
Sbjct: 430 QSLIQKVETYEKQLKNLVEEKSTIQSKLSKTEEYSKECLKEFKKIIS---KYNVLQGQNK 486
Query: 151 AIQN-------DFSYYRRTLSRMRINNVPAEGENEVNNELANRMSL 189
++ + L +++ + + + N NRMS+
Sbjct: 487 TLEEKNIQLSLEKQQMMEALDQLKSKEHKTQSDMAIVNNENNRMSI 532
>gi|22749515 coiled-coil domain containing 110 isoform a [Homo
sapiens]
Length = 833
Score = 28.5 bits (62), Expect = 8.5
Identities = 30/166 (18%), Positives = 70/166 (42%), Gaps = 12/166 (7%)
Query: 31 SEKEIYNQVNVVLKDAEGILEDLQSYRGAGHEIREAIQHPADEKLQEKAWGAVVPLVGKL 90
SE E ++VN V + ++ LQ+Y +I++ + E L K+ + PL+
Sbjct: 409 SENEKTSKVNSVTEQCVAKIQYLQNYLKESVQIQKKVMELESENLNLKS--KMKPLIFTT 466
Query: 91 KKFYEFSQRLEAALRGLLGALTSTPYSPTQHLEREQALAKQFAEILHFTLRFDELKMTNP 150
+ + + E L+ L+ ++ ++ E + K+F +I+ +++ L+ N
Sbjct: 467 QSLIQKVETYEKQLKNLVEEKSTIQSKLSKTEEYSKECLKEFKKIIS---KYNVLQGQNK 523
Query: 151 AIQN-------DFSYYRRTLSRMRINNVPAEGENEVNNELANRMSL 189
++ + L +++ + + + N NRMS+
Sbjct: 524 TLEEKNIQLSLEKQQMMEALDQLKSKEHKTQSDMAIVNNENNRMSI 569
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 28.5 bits (62), Expect = 8.5
Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 28/147 (19%)
Query: 53 LQSYRGAGHEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALT 112
L + E+R I +L+ + G + G++ KF E +LE A
Sbjct: 280 LDQLKAQNQELRNKIN-----ELELRLQGHEKEMKGQVNKFQELQLQLEKA--------- 325
Query: 113 STPYSPTQHLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVP 172
+ +E+E+ L K E++ T ++D+ A++ LS R N
Sbjct: 326 -----KVELIEKEKVLNKCRDELVRTTAQYDQASTKYTALEQKLKKLTEDLSCQRQNAES 380
Query: 173 A---------EGENEVNNELANRMSLF 190
A E E E EL+ + F
Sbjct: 381 ARCSLEQKIKEKEKEFQEELSRQQRSF 407
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,372,185
Number of Sequences: 37866
Number of extensions: 457189
Number of successful extensions: 1192
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1187
Number of HSP's gapped (non-prelim): 23
length of query: 324
length of database: 18,247,518
effective HSP length: 102
effective length of query: 222
effective length of database: 14,385,186
effective search space: 3193511292
effective search space used: 3193511292
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.