Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM49A Sequence: fasta or formatted (323aa) NCBI GI: 13540580
Description:

family with sequence similarity 49, member A

Referenced in:

Additional Conserved Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         21           1
 C cysteine            2.2          7           1
 D aspartate           4.0         13           1
 E glutamate           9.3         30           2
 F phenylalanine       4.6         15           2
 G glycine             2.5          8           1
 H histidine           2.5          8           1
 I isoleucine          5.9         19           2
 K lysine              5.3         17           1
 L leucine            10.8         35           2
 M methionine          4.3         14           1
 N asparagine          6.5         21           2
 P proline             4.3         14           2
 Q glutamine           4.3         14           1
 R arginine            5.9         19           2
 S serine              5.9         19           1
 T threonine           6.8         22           2
 V valine              5.0         16           2
 W tryptophan          0.6          2           1
 Y tyrosine            2.8          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 49, member A 
FAM49B                0.785   hypothetical protein LOC51571 
B4GALT7               0.018   xylosylprotein beta 1,4-galactosyltransferase 7 [Homo...
CYFIP2                0.014   cytoplasmic FMR1 interacting protein 2 
CYFIP2                0.014   cytoplasmic FMR1 interacting protein 2 
CYFIP2                0.014   cytoplasmic FMR1 interacting protein 2 
CYFIP1                0.011   cytoplasmic FMR1 interacting protein 1 isoform a [Ho...
MORC2                 0.008   MORC family CW-type zinc finger 2 
TLN2                  0.006   talin 2 
JAK1                  0.006   janus kinase 1 
AIPL1                 0.006   aryl hydrocarbon receptor interacting protein-like 1...
ATM                   0.005   ataxia telangiectasia mutated isoform 1 
LOC651610             0.005   PREDICTED: similar to Serine-protein kinase ATM, pa...
ABCG4                 0.005   ATP-binding cassette, subfamily G, member 4 
ABCG4                 0.005   ATP-binding cassette, subfamily G, member 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press