Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 42716299
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42716299 CD59 antigen preproprotein [Homo sapiens]
(128 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|187829185 CD59 antigen preproprotein [Homo sapiens] 278 1e-75
gi|187829183 CD59 antigen preproprotein [Homo sapiens] 278 1e-75
gi|10835165 CD59 antigen preproprotein [Homo sapiens] 278 1e-75
gi|42716299 CD59 antigen preproprotein [Homo sapiens] 278 1e-75
gi|187829070 CD59 antigen preproprotein [Homo sapiens] 278 1e-75
gi|42761474 CD59 antigen preproprotein [Homo sapiens] 278 1e-75
gi|42716302 CD59 antigen preproprotein [Homo sapiens] 278 1e-75
gi|187828910 CD59 antigen preproprotein [Homo sapiens] 278 1e-75
gi|9966907 ARS component B precursor [Homo sapiens] 41 2e-04
gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 39 0.001
gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 39 0.001
gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 39 0.001
gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens] 37 0.003
gi|30794264 glycosylphosphatidylinositol anchored high density l... 37 0.004
gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 33 0.061
gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 33 0.061
gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo ... 33 0.061
gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens] 32 0.14
gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens] 31 0.23
gi|13376874 lymphocyte antigen 6 complex G6C [Homo sapiens] 31 0.30
gi|222136622 prostate and testis expressed 3 [Homo sapiens] 30 0.51
gi|51243049 lymphocyte antigen 6 complex G6D [Homo sapiens] 28 1.5
gi|4758326 coagulation factor II (thrombin) receptor-like 2 prec... 28 1.5
gi|33356128 NMDA receptor regulated 1-like protein isoform 1 [Ho... 28 1.5
gi|61563742 hect domain and RLD 6 [Homo sapiens] 28 2.0
gi|157674354 WD repeat domain 72 [Homo sapiens] 28 2.0
gi|7019381 fibronectin leucine rich transmembrane protein 2 [Hom... 28 2.6
gi|7706093 toll-like receptor 7 [Homo sapiens] 27 3.3
gi|75677574 cell cycle progression 1 isoform 2 [Homo sapiens] 27 3.3
gi|75677585 cell cycle progression 1 isoform 1 [Homo sapiens] 27 3.3
>gi|187829185 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 278 bits (710), Expect = 1e-75
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV 60
MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
Sbjct: 1 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV 60
Query: 61 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL 120
YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
Sbjct: 61 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL 120
Query: 121 AAAWSLHP 128
AAAWSLHP
Sbjct: 121 AAAWSLHP 128
>gi|187829183 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 278 bits (710), Expect = 1e-75
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV 60
MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
Sbjct: 1 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV 60
Query: 61 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL 120
YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
Sbjct: 61 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL 120
Query: 121 AAAWSLHP 128
AAAWSLHP
Sbjct: 121 AAAWSLHP 128
>gi|10835165 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 278 bits (710), Expect = 1e-75
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV 60
MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
Sbjct: 1 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV 60
Query: 61 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL 120
YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
Sbjct: 61 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL 120
Query: 121 AAAWSLHP 128
AAAWSLHP
Sbjct: 121 AAAWSLHP 128
>gi|42716299 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 278 bits (710), Expect = 1e-75
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV 60
MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
Sbjct: 1 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV 60
Query: 61 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL 120
YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
Sbjct: 61 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL 120
Query: 121 AAAWSLHP 128
AAAWSLHP
Sbjct: 121 AAAWSLHP 128
>gi|187829070 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 278 bits (710), Expect = 1e-75
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV 60
MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
Sbjct: 1 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV 60
Query: 61 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL 120
YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
Sbjct: 61 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL 120
Query: 121 AAAWSLHP 128
AAAWSLHP
Sbjct: 121 AAAWSLHP 128
>gi|42761474 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 278 bits (710), Expect = 1e-75
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV 60
MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
Sbjct: 1 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV 60
Query: 61 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL 120
YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
Sbjct: 61 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL 120
Query: 121 AAAWSLHP 128
AAAWSLHP
Sbjct: 121 AAAWSLHP 128
>gi|42716302 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 278 bits (710), Expect = 1e-75
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV 60
MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
Sbjct: 1 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV 60
Query: 61 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL 120
YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
Sbjct: 61 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL 120
Query: 121 AAAWSLHP 128
AAAWSLHP
Sbjct: 121 AAAWSLHP 128
>gi|187828910 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 278 bits (710), Expect = 1e-75
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV 60
MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
Sbjct: 1 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV 60
Query: 61 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL 120
YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
Sbjct: 61 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL 120
Query: 121 AAAWSLHP 128
AAAWSLHP
Sbjct: 121 AAAWSLHP 128
>gi|9966907 ARS component B precursor [Homo sapiens]
Length = 103
Score = 41.2 bits (95), Expect = 2e-04
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 12 LLLVLAVFCHSGHSLQCYNCPNP--TADCKTAVNCSSDFDACLITKAGLQV---YNKC-W 65
LLLV A G +L+CY C P +A C+T C + AC+ T ++ +N+
Sbjct: 9 LLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPV 68
Query: 66 KFEHCNFNDVTTRLRENELTY--YCCKKDLCN 95
C+ + V T + +CC +DLCN
Sbjct: 69 VTRSCSSSCVATDPDSIGAAHLIFCCFRDLCN 100
>gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 38.9 bits (89), Expect = 0.001
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 16/123 (13%)
Query: 9 LFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKA-----GLQVYNK 63
L L+LV+ + +L C+ C +C + C + C+ T+ ++V
Sbjct: 4 LLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKVSKS 63
Query: 64 CWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFLAAA 123
C C F V ++ T CC+ DLCN GT L+ L L LA
Sbjct: 64 C--VPRC-FETVYDGYSKHASTTSCCQYDLCN--------GTGLATPATLALAPILLATL 112
Query: 124 WSL 126
W L
Sbjct: 113 WGL 115
>gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 38.9 bits (89), Expect = 0.001
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 16/123 (13%)
Query: 9 LFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKA-----GLQVYNK 63
L L+LV+ + +L C+ C +C + C + C+ T+ ++V
Sbjct: 4 LLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKVSKS 63
Query: 64 CWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFLAAA 123
C C F V ++ T CC+ DLCN GT L+ L L LA
Sbjct: 64 C--VPRC-FETVYDGYSKHASTTSCCQYDLCN--------GTGLATPATLALAPILLATL 112
Query: 124 WSL 126
W L
Sbjct: 113 WGL 115
>gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 38.9 bits (89), Expect = 0.001
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 16/123 (13%)
Query: 9 LFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKA-----GLQVYNK 63
L L+LV+ + +L C+ C +C + C + C+ T+ ++V
Sbjct: 4 LLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKVSKS 63
Query: 64 CWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFLAAA 123
C C F V ++ T CC+ DLCN GT L+ L L LA
Sbjct: 64 C--VPRC-FETVYDGYSKHASTTSCCQYDLCN--------GTGLATPATLALAPILLATL 112
Query: 124 WSL 126
W L
Sbjct: 113 WGL 115
>gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens]
Length = 125
Score = 37.4 bits (85), Expect = 0.003
Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 6 GSVLFGLLLVLAVFCHSGHSLQCYNCPNPT--ADCKTAVNCSSDFDACLIT--------- 54
G+ L L LVLA +L+CY CP PT +DC T C+++ C T
Sbjct: 3 GTRLALLALVLAACGELAPALRCYVCPEPTGVSDCVTIATCTTNETMCKTTLYSREIVYP 62
Query: 55 -KAGLQVYNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCN 95
+ V C C +DV L CC +LCN
Sbjct: 63 FQGDSTVTKSC--ASKCKPSDVDG--IGQTLPVSCCNTELCN 100
>gi|30794264 glycosylphosphatidylinositol anchored high density
lipoprotein binding protein 1 [Homo sapiens]
Length = 184
Score = 37.0 bits (84), Expect = 0.004
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 26 LQCYNCPNPTAD--CKTAVNCSSDFDACLI-----TKAGLQVYNKCWKFEHCNFNDVTTR 78
L+CY C + D C NCS + T++GL + W + C +T
Sbjct: 63 LRCYTCKSLPRDERCNLTQNCSHGQTCTTLIAHGNTESGLLTTHSTWCTDSCQ--PITKT 120
Query: 79 LRENELTYYCCKKDLCN 95
+ ++T CC+ LCN
Sbjct: 121 VEGTQVTMTCCQSSLCN 137
>gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 33.1 bits (74), Expect = 0.061
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 8 VLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKA----GLQVYNK 63
+L LLL+ AV +L C+ C C++ V C+ C+IT+A G+ V
Sbjct: 3 LLLVLLLLAAVCAALAQALHCHVCCGHE-HCESLVECAPTDKYCVITRATSPGGILVMKS 61
Query: 64 CWKFEHCNFNDVTTRLRENELTYYCCKKDLCN 95
C C + V++ R L+ CC+ CN
Sbjct: 62 C--SPTCPNSTVSSDSR--ALSVSCCQGSQCN 89
>gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 33.1 bits (74), Expect = 0.061
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 8 VLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKA----GLQVYNK 63
+L LLL+ AV +L C+ C C++ V C+ C+IT+A G+ V
Sbjct: 3 LLLVLLLLAAVCAALAQALHCHVCCGHE-HCESLVECAPTDKYCVITRATSPGGILVMKS 61
Query: 64 CWKFEHCNFNDVTTRLRENELTYYCCKKDLCN 95
C C + V++ R L+ CC+ CN
Sbjct: 62 C--SPTCPNSTVSSDSR--ALSVSCCQGSQCN 89
>gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo
sapiens]
Length = 190
Score = 33.1 bits (74), Expect = 0.061
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 8 VLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKA----GLQVYNK 63
+L LLL+ AV +L C+ C C++ V C+ C+IT+A G+ V
Sbjct: 3 LLLVLLLLAAVCAALAQALHCHVCCGHE-HCESLVECAPTDKYCVITRATSPGGILVMKS 61
Query: 64 CWKFEHCNFNDVTTRLRENELTYYCCKKDLCN 95
C C + V++ R L+ CC+ CN
Sbjct: 62 C--SPTCPNSTVSSDSR--ALSVSCCQGSQCN 89
>gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens]
Length = 128
Score = 32.0 bits (71), Expect = 0.14
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 12 LLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKA-----GLQVYNKCWK 66
LL LAV +L+C+ C + +++CK +V C + C T G V C
Sbjct: 7 LLAALAVATGPALTLRCHVCTS-SSNCKHSVVCPASSRFCKTTNTVEPLRGNLVKKDC-- 63
Query: 67 FEHCNFN-DVTTRLRENELTYYCCKKDLCNFNEQLEN 102
E C + + ++ + CC++DLC NE+L N
Sbjct: 64 AESCTPSYTLQGQVSSGTSSTQCCQEDLC--NEKLHN 98
>gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens]
Length = 123
Score = 31.2 bits (69), Expect = 0.23
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 28/121 (23%)
Query: 13 LLVLAVFCHSGHSLQCYNCPNPTA--DCKTAVNCSSDFDACLITKAG----LQVYNKCWK 66
LL+ + G +L CY+C + DC NC+ + C + L V +K
Sbjct: 8 LLMAGLALQPGTALLCYSCKAQVSNEDCLQVENCTQLGEQCWTARIRAVGLLTVISK--- 64
Query: 67 FEHCNFNDVTTRLRENELTYY-------CCKKDLCNFNEQLENGGTSLSEKTVLLLVTPF 119
C+ N V ++ YY CC DLCN +G +L +L + P
Sbjct: 65 --GCSLNCV-----DDSQDYYVGKKNITCCDTDLCN-----ASGAHALQPAAAILALLPA 112
Query: 120 L 120
L
Sbjct: 113 L 113
>gi|13376874 lymphocyte antigen 6 complex G6C [Homo sapiens]
Length = 125
Score = 30.8 bits (68), Expect = 0.30
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Query: 12 LLLVLAVFCHSGHSLQCYNCPN-PTADCKTAVNCSSD-FDACLITKAGLQVYNKCWKF-- 67
LL + + C ++C++C P C +C + CL T A L K W F
Sbjct: 6 LLTLSVLLCWVSADIRCHSCYKVPVLGCVDRQSCRLEPGQQCLTTHAYL---GKMWVFSN 62
Query: 68 -------EHCN--FNDVTTRLRENELTYY--CCKKDLCN 95
E C FN +L LTY CC KD CN
Sbjct: 63 LRCGTPEEPCQEAFNQTNRKLG---LTYNTTCCNKDNCN 98
>gi|222136622 prostate and testis expressed 3 [Homo sapiens]
Length = 98
Score = 30.0 bits (66), Expect = 0.51
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 25 SLQCYNCP--NPTADCKTA--VNCSSDFDACLITKA----GLQV-YNKCWKFEHCNFNDV 75
SLQC C T C+ V + +AC++ + LQ+ Y C KF D+
Sbjct: 20 SLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQKF----CRDM 75
Query: 76 TTRLRENELTYYCCKKDLCNF 96
T LR + CC + CNF
Sbjct: 76 TFDLRNRTYVHTCCNYNYCNF 96
>gi|51243049 lymphocyte antigen 6 complex G6D [Homo sapiens]
Length = 133
Score = 28.5 bits (62), Expect = 1.5
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 11 GLLLVLAVFCHSGHSLQCYNC-PNPTADCKTAV 42
G+LL + G+ ++CYNC +P++ CK AV
Sbjct: 7 GILLSSLLGAALGNRMRCYNCGGSPSSSCKEAV 39
>gi|4758326 coagulation factor II (thrombin) receptor-like 2
precursor [Homo sapiens]
Length = 374
Score = 28.5 bits (62), Expect = 1.5
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 11 GLLLVLAVFCHSGHSLQCYNCPNPTADCKT 40
GLLL+L FC SG N PT KT
Sbjct: 10 GLLLLLPTFCQSGMENDTNNLAKPTLPIKT 39
>gi|33356128 NMDA receptor regulated 1-like protein isoform 1 [Homo
sapiens]
Length = 864
Score = 28.5 bits (62), Expect = 1.5
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 69 HCNFNDVTTRLRENELTYYCCKKDLCNFNEQ-LENGGTSL 107
H N D+ +++ E+ KKDL +FNE L+ TSL
Sbjct: 722 HSNLPDIVSKVLSQEMQKIFVKKDLESFNEDFLKRNATSL 761
>gi|61563742 hect domain and RLD 6 [Homo sapiens]
Length = 1022
Score = 28.1 bits (61), Expect = 2.0
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 14 LVLAVFCHSGHS------LQCYNCPNPTADCKTAVNCSSDFD--ACLITKAGLQVYNKCW 65
L+ A+ CHS H L CP D K N F C ++K LQV KCW
Sbjct: 465 LLRALPCHSPHQEALSVFLLLPECP-VMHDSKNWKNLVVPFAKAVCEMSKQSLQVLKKCW 523
Query: 66 KF 67
F
Sbjct: 524 AF 525
>gi|157674354 WD repeat domain 72 [Homo sapiens]
Length = 1102
Score = 28.1 bits (61), Expect = 2.0
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 41 AVNCSSDFDACLITKAGLQVYNKCWK-FEHCNFNDVTTRLREN 82
++NC + + L V++KCWK +++C+F+ + T + N
Sbjct: 212 SLNCQTIRFCTYTERLLLVVFSKCWKVYDYCDFSLLLTEVSRN 254
>gi|7019381 fibronectin leucine rich transmembrane protein 2 [Homo
sapiens]
Length = 660
Score = 27.7 bits (60), Expect = 2.6
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 2 GIQGGSVLFGLLLVLAVFCHSGH 24
G+ GG+V+F L+++L+VFC H
Sbjct: 545 GLIGGAVIFVLVVLLSVFCWHMH 567
>gi|7706093 toll-like receptor 7 [Homo sapiens]
Length = 1049
Score = 27.3 bits (59), Expect = 3.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 10 FGLLLVLAVFCHSGHSLQCYNCPNPTADCK 39
F L L + SG+ +CYN P P A CK
Sbjct: 245 FNNLNQLQILDLSGNCPRCYNAPFPCAPCK 274
>gi|75677574 cell cycle progression 1 isoform 2 [Homo sapiens]
Length = 757
Score = 27.3 bits (59), Expect = 3.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 18 VFCHSGHSLQCYNCPNPTADCKTAVNCSS 46
V H G ++ N PT C+ A CSS
Sbjct: 16 VISHEGSDIEMLNSVTPTDSCEPAPECSS 44
>gi|75677585 cell cycle progression 1 isoform 1 [Homo sapiens]
Length = 757
Score = 27.3 bits (59), Expect = 3.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 18 VFCHSGHSLQCYNCPNPTADCKTAVNCSS 46
V H G ++ N PT C+ A CSS
Sbjct: 16 VISHEGSDIEMLNSVTPTDSCEPAPECSS 44
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.137 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,142,569
Number of Sequences: 37866
Number of extensions: 209609
Number of successful extensions: 697
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 672
Number of HSP's gapped (non-prelim): 40
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.