Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 42516563
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42516563 UDP-glucuronate decarboxylase 1 [Homo sapiens]
(420 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42516563 UDP-glucuronate decarboxylase 1 [Homo sapiens] 845 0.0
gi|7657641 TDP-glucose 4,6-dehydratase [Homo sapiens] 108 9e-24
gi|56118217 UDP-galactose-4-epimerase [Homo sapiens] 75 1e-13
gi|56237023 UDP-galactose-4-epimerase [Homo sapiens] 75 1e-13
gi|189083684 UDP-galactose-4-epimerase [Homo sapiens] 75 1e-13
gi|4507709 tissue specific transplantation antigen P35B [Homo sa... 73 4e-13
gi|193211614 NAD(P) dependent steroid dehydrogenase-like [Homo s... 71 2e-12
gi|8393516 NAD(P) dependent steroid dehydrogenase-like [Homo sap... 71 2e-12
gi|4504031 GDP-mannose 4,6-dehydratase [Homo sapiens] 59 8e-09
gi|116812630 short chain dehydrogenase/reductase family 39U, mem... 37 0.034
gi|239756515 PREDICTED: similar to Putative 3-beta-HSD family pr... 36 0.057
gi|239751020 PREDICTED: hypothetical protein XP_002347673 [Homo ... 36 0.057
gi|239745448 PREDICTED: hypothetical protein XP_002343493 [Homo ... 36 0.057
gi|116268111 short chain dehydrogenase/reductase family 42E, mem... 33 0.37
gi|28558975 mediator complex subunit 17 [Homo sapiens] 32 1.1
gi|19923959 serine dehydratase-like [Homo sapiens] 32 1.4
gi|91105174 CD19 antigen [Homo sapiens] 31 2.4
gi|118766328 transmembrane and tetratricopeptide repeat containi... 30 4.1
gi|118766330 transmembrane and tetratricopeptide repeat containi... 30 4.1
gi|91754185 hypothetical protein LOC254268 [Homo sapiens] 30 4.1
gi|19923642 Hermansky-Pudlak syndrome 3 protein [Homo sapiens] 29 7.0
gi|26638659 mitochondrial ribosomal protein L40 [Homo sapiens] 29 7.0
gi|157502184 kinesin family member 6 [Homo sapiens] 29 9.1
gi|71274152 hypothetical protein LOC388939 [Homo sapiens] 29 9.1
>gi|42516563 UDP-glucuronate decarboxylase 1 [Homo sapiens]
Length = 420
Score = 845 bits (2183), Expect = 0.0
Identities = 420/420 (100%), Positives = 420/420 (100%)
Query: 1 MVSKALLRLVSAVNRRRMKLLLGIALLAYVASVWGNFVNMRSIQENGELKIESKIEEMVE 60
MVSKALLRLVSAVNRRRMKLLLGIALLAYVASVWGNFVNMRSIQENGELKIESKIEEMVE
Sbjct: 1 MVSKALLRLVSAVNRRRMKLLLGIALLAYVASVWGNFVNMRSIQENGELKIESKIEEMVE 60
Query: 61 PLREKIRDLEKSFTQKYPPVKFLSEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDN 120
PLREKIRDLEKSFTQKYPPVKFLSEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDN
Sbjct: 61 PLREKIRDLEKSFTQKYPPVKFLSEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDN 120
Query: 121 FFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNT 180
FFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNT
Sbjct: 121 FFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNT 180
Query: 181 IGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAET 240
IGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAET
Sbjct: 181 IGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAET 240
Query: 241 MCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQ 300
MCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQ
Sbjct: 241 MCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQ 300
Query: 301 YVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQK 360
YVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQK
Sbjct: 301 YVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQK 360
Query: 361 RKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKPKPARIKKGRTRHS 420
RKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKPKPARIKKGRTRHS
Sbjct: 361 RKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKPKPARIKKGRTRHS 420
>gi|7657641 TDP-glucose 4,6-dehydratase [Homo sapiens]
Length = 350
Score = 108 bits (270), Expect = 9e-24
Identities = 85/339 (25%), Positives = 146/339 (43%), Gaps = 25/339 (7%)
Query: 89 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 145
KR+L+TGGAGF+ SH+ L+ D + + +D + +N+E +N++ I D+
Sbjct: 18 KRVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDI 77
Query: 146 VEPLYI-------EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RL 197
+ ++ ++D + H A+ + N GT ++ A +
Sbjct: 78 CDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAHEARVEKF 137
Query: 198 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 257
+ ST EVYG + + +P P Y K AE +Y +Q V + R
Sbjct: 138 IYVSTDEVYGG-----SLDKEFDESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITR 192
Query: 258 IFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNV 317
N +GP H +V+ FI ++GSG QTR F Y +D+V + ++
Sbjct: 193 SSNVYGP--HQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGK 250
Query: 318 SSPV-NLGNPEEHTILEFA----QLIKNLVGSGSEIQFLSEAQDDP-QKRKPDIKKAKLM 371
+ N+G E ++++ A QLIK ++ D P + +K K+
Sbjct: 251 PGEIYNIGTNFEMSVVQLAKELIQLIKETNSESEMENWVDYVNDRPTNDMRYPMKSEKIH 310
Query: 372 -LGWEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKPKP 409
LGW P VP +EG+ K I ++R+ N + +P P
Sbjct: 311 GLGWRPKVPWKEGIKKTIEWYRENFHNWKNVEKALEPFP 349
>gi|56118217 UDP-galactose-4-epimerase [Homo sapiens]
Length = 348
Score = 75.1 bits (183), Expect = 1e-13
Identities = 76/330 (23%), Positives = 141/330 (42%), Gaps = 42/330 (12%)
Query: 89 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRK---------RNVEHWIGH---- 135
+++L+TGGAG++GSH +L+ G+ V+DNF + R V+ G
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 136 ENFELINHDVVEPLYIEVD--QIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV 193
E ++++ ++ L+ + + H A + + P+ + N GT+ +L + K
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 194 GAR-LLLASTSEVYGDPEVHPQSEDY--WGHVNPIGPRACYDEGKRVAETMCYAYMKQEG 250
G + L+ +S++ VYG+P+ P E + G NP G + E + +C A
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIE--EMIRDLCQADKTWNA 180
Query: 251 VEVRVARIFNTFGPRMH---MNDGRVVSN----FILQALQG--EPLTVYGS------GSQ 295
V + R FN G D + + N ++ Q G E L V+G+ G+
Sbjct: 181 V---LLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 296 TRAFQYVSDLVNGLVALMNSNVSS----PVNLGNPEEHTILEFAQLIKNLVGSGSEIQFL 351
R + +V DL G +A + NLG +++L+ Q ++ G + +
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVV 297
Query: 352 SEAQDDPQKRKPDIKKAKLMLGWEPVVPLE 381
+ + D + A+ LGW + L+
Sbjct: 298 ARREGDVAACYANPSLAQEELGWTAALGLD 327
>gi|56237023 UDP-galactose-4-epimerase [Homo sapiens]
Length = 348
Score = 75.1 bits (183), Expect = 1e-13
Identities = 76/330 (23%), Positives = 141/330 (42%), Gaps = 42/330 (12%)
Query: 89 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRK---------RNVEHWIGH---- 135
+++L+TGGAG++GSH +L+ G+ V+DNF + R V+ G
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 136 ENFELINHDVVEPLYIEVD--QIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV 193
E ++++ ++ L+ + + H A + + P+ + N GT+ +L + K
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 194 GAR-LLLASTSEVYGDPEVHPQSEDY--WGHVNPIGPRACYDEGKRVAETMCYAYMKQEG 250
G + L+ +S++ VYG+P+ P E + G NP G + E + +C A
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIE--EMIRDLCQADKTWNA 180
Query: 251 VEVRVARIFNTFGPRMH---MNDGRVVSN----FILQALQG--EPLTVYGS------GSQ 295
V + R FN G D + + N ++ Q G E L V+G+ G+
Sbjct: 181 V---LLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 296 TRAFQYVSDLVNGLVALMNSNVSS----PVNLGNPEEHTILEFAQLIKNLVGSGSEIQFL 351
R + +V DL G +A + NLG +++L+ Q ++ G + +
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVV 297
Query: 352 SEAQDDPQKRKPDIKKAKLMLGWEPVVPLE 381
+ + D + A+ LGW + L+
Sbjct: 298 ARREGDVAACYANPSLAQEELGWTAALGLD 327
>gi|189083684 UDP-galactose-4-epimerase [Homo sapiens]
Length = 348
Score = 75.1 bits (183), Expect = 1e-13
Identities = 76/330 (23%), Positives = 141/330 (42%), Gaps = 42/330 (12%)
Query: 89 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRK---------RNVEHWIGH---- 135
+++L+TGGAG++GSH +L+ G+ V+DNF + R V+ G
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 136 ENFELINHDVVEPLYIEVD--QIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV 193
E ++++ ++ L+ + + H A + + P+ + N GT+ +L + K
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 194 GAR-LLLASTSEVYGDPEVHPQSEDY--WGHVNPIGPRACYDEGKRVAETMCYAYMKQEG 250
G + L+ +S++ VYG+P+ P E + G NP G + E + +C A
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIE--EMIRDLCQADKTWNA 180
Query: 251 VEVRVARIFNTFGPRMH---MNDGRVVSN----FILQALQG--EPLTVYGS------GSQ 295
V + R FN G D + + N ++ Q G E L V+G+ G+
Sbjct: 181 V---LLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 296 TRAFQYVSDLVNGLVALMNSNVSS----PVNLGNPEEHTILEFAQLIKNLVGSGSEIQFL 351
R + +V DL G +A + NLG +++L+ Q ++ G + +
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVV 297
Query: 352 SEAQDDPQKRKPDIKKAKLMLGWEPVVPLE 381
+ + D + A+ LGW + L+
Sbjct: 298 ARREGDVAACYANPSLAQEELGWTAALGLD 327
>gi|4507709 tissue specific transplantation antigen P35B [Homo
sapiens]
Length = 321
Score = 73.2 bits (178), Expect = 4e-13
Identities = 82/321 (25%), Positives = 131/321 (40%), Gaps = 26/321 (8%)
Query: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
RIL+TGG+G VG + K++ DG + D F K + +L + L
Sbjct: 9 RILVTGGSGLVGKAI-QKVVADGAGLPGEDWVFVSSK----------DADLTDTAQTRAL 57
Query: 150 YIEVD--QIYHLASPASP--PNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSE- 204
+ +V + HLA+ N YN + + N N+L A VGAR +++ S
Sbjct: 58 FEKVQPTHVIHLAAMVGGLFRNIKYN-LDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTC 116
Query: 205 VYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGP 264
++ D +P E + P Y KR+ + AY +Q G N FGP
Sbjct: 117 IFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGP 176
Query: 265 RMHMN--DGRVVSNFI----LQALQGEPLTVYGSGSQTRAFQYVSDLVNGLV-ALMNSNV 317
+ N DG V+ I L G LTV+G+G+ R F Y DL + L N
Sbjct: 177 HDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNE 236
Query: 318 SSPV--NLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWE 375
P+ ++G +E +I E A+ + + E+ F + D K+ K + L
Sbjct: 237 VEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTYLPDF 296
Query: 376 PVVPLEEGLNKAIHYFRKELE 396
P ++ + + +F E
Sbjct: 297 RFTPFKQAVKETCAWFTDNYE 317
>gi|193211614 NAD(P) dependent steroid dehydrogenase-like [Homo
sapiens]
Length = 373
Score = 70.9 bits (172), Expect = 2e-12
Identities = 69/275 (25%), Positives = 122/275 (44%), Gaps = 20/275 (7%)
Query: 60 EPLREKIR--DLEKSFTQKYPPVKFLSEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTV 117
EP+R+++ L + + ++ +++ KR + GG+GF+G H+ ++L+ G+ V V
Sbjct: 7 EPMRDQVARTHLTEDTPKVNADIEKVNQNQAKRCTVIGGSGFLGQHMVEQLLARGYAVNV 66
Query: 118 VDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLK 177
D V ++G +L + + P V+ ++H ASP N N +
Sbjct: 67 FDIQQGFDNPQVRFFLG----DLCSRQDLYPALKGVNTVFHCASPPPSSN---NKELFYR 119
Query: 178 TNTIGTLNMLGLAKRVGAR--LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGK 235
N IGT N++ K G + +L +S S ++ ++ +ED + PI Y E K
Sbjct: 120 VNYIGTKNVIETCKEAGVQKLILTSSASVIFEGVDIKNGTEDLPYAMKPID---YYTETK 176
Query: 236 RVAE-TMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGS 294
+ E + A ++ R FGPR D ++V I A G+ V G+G
Sbjct: 177 ILQERAVLGANDPEKNFLTTAIRPHGIFGPR----DPQLVPILIEAARNGKMKFVIGNGK 232
Query: 295 QTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
F +V ++V+G + L +S LG H
Sbjct: 233 NLVDFTFVENVVHGHI-LAAEQLSRDSTLGGKAFH 266
>gi|8393516 NAD(P) dependent steroid dehydrogenase-like [Homo
sapiens]
Length = 373
Score = 70.9 bits (172), Expect = 2e-12
Identities = 69/275 (25%), Positives = 122/275 (44%), Gaps = 20/275 (7%)
Query: 60 EPLREKIR--DLEKSFTQKYPPVKFLSEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTV 117
EP+R+++ L + + ++ +++ KR + GG+GF+G H+ ++L+ G+ V V
Sbjct: 7 EPMRDQVARTHLTEDTPKVNADIEKVNQNQAKRCTVIGGSGFLGQHMVEQLLARGYAVNV 66
Query: 118 VDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLK 177
D V ++G +L + + P V+ ++H ASP N N +
Sbjct: 67 FDIQQGFDNPQVRFFLG----DLCSRQDLYPALKGVNTVFHCASPPPSSN---NKELFYR 119
Query: 178 TNTIGTLNMLGLAKRVGAR--LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGK 235
N IGT N++ K G + +L +S S ++ ++ +ED + PI Y E K
Sbjct: 120 VNYIGTKNVIETCKEAGVQKLILTSSASVIFEGVDIKNGTEDLPYAMKPID---YYTETK 176
Query: 236 RVAE-TMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGS 294
+ E + A ++ R FGPR D ++V I A G+ V G+G
Sbjct: 177 ILQERAVLGANDPEKNFLTTAIRPHGIFGPR----DPQLVPILIEAARNGKMKFVIGNGK 232
Query: 295 QTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
F +V ++V+G + L +S LG H
Sbjct: 233 NLVDFTFVENVVHGHI-LAAEQLSRDSTLGGKAFH 266
>gi|4504031 GDP-mannose 4,6-dehydratase [Homo sapiens]
Length = 372
Score = 58.9 bits (141), Expect = 8e-09
Identities = 81/349 (23%), Positives = 139/349 (39%), Gaps = 54/349 (15%)
Query: 86 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVV----DNFFTGRKRNVEHWIGHE----- 136
K R LITG G GS+L + L+ G+EV + +F TGR +EH +
Sbjct: 21 KPRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGR---IEHLYKNPQAHIE 77
Query: 137 -NFELINHDVVEPL-------YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLG 188
N +L D+ + ++ +IY+L + + T + +GTL +L
Sbjct: 78 GNMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLD 137
Query: 189 LAKRVG----ARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYA 244
K G + ASTSE+YG + PQ E P PR+ Y K A +
Sbjct: 138 AVKTCGLINSVKFYQASTSELYGKVQEIPQKE-----TTPFYPRSPYGAAKLYAYWIVVN 192
Query: 245 YMKQEGVEVRVARIFNTFGPRMHMN-DGRVVSNFILQALQGEPLTVYGSGS--QTRAFQY 301
+ + + +FN PR N R +S + + G+ L + G+ R + +
Sbjct: 193 FREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQ-LECFSLGNLDAKRDWGH 251
Query: 302 VSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQ-----LIKNLVGSGSEIQFLSEAQD 356
D V + ++ ++ + E H++ EF + + K +V G + ++
Sbjct: 252 AKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKE 311
Query: 357 --------DPQKRKP--------DIKKAKLMLGWEPVVPLEEGLNKAIH 389
D + +P D KAK L W+P V +E + + +H
Sbjct: 312 TGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVH 360
>gi|116812630 short chain dehydrogenase/reductase family 39U, member
1 [Homo sapiens]
Length = 293
Score = 37.0 bits (84), Expect = 0.034
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVV 118
R+L+ GG GF+G+ LT L GHEVT+V
Sbjct: 2 RVLVGGGTGFIGTALTQLLNARGHEVTLV 30
>gi|239756515 PREDICTED: similar to Putative 3-beta-HSD family
protein ENSP00000330812 [Homo sapiens]
Length = 422
Score = 36.2 bits (82), Expect = 0.057
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 26/143 (18%)
Query: 88 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV-- 145
R+++L+TGG G++G L L G V ++D R W + I DV
Sbjct: 33 RQKVLVTGGGGYLGFSLGSHLAKSGTSVILLD-------RRRPQWELSPETKFIQADVRD 85
Query: 146 VEPLYIE---VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLG-------LAKRVGA 195
E LY VD ++H+AS Y + + L+ I ++N+ G +R
Sbjct: 86 EEALYHAFEGVDCVFHVAS------YGMSGAEKLQKEQIESINVGGTKLVIDVCVRRRVP 139
Query: 196 RLLLASTSEV-YGDPEVHPQSED 217
RL+ ST V +G + ED
Sbjct: 140 RLIYTSTVNVAFGGKPIEQGDED 162
>gi|239751020 PREDICTED: hypothetical protein XP_002347673 [Homo
sapiens]
Length = 422
Score = 36.2 bits (82), Expect = 0.057
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 26/143 (18%)
Query: 88 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV-- 145
R+++L+TGG G++G L L G V ++D R W + I DV
Sbjct: 33 RQKVLVTGGGGYLGFSLGSHLAKSGTSVILLD-------RRRPQWELSPETKFIQADVRD 85
Query: 146 VEPLYIE---VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLG-------LAKRVGA 195
E LY VD ++H+AS Y + + L+ I ++N+ G +R
Sbjct: 86 EEALYHAFEGVDCVFHVAS------YGMSGAEKLQKEQIESINVGGTKLVIDVCVRRRVP 139
Query: 196 RLLLASTSEV-YGDPEVHPQSED 217
RL+ ST V +G + ED
Sbjct: 140 RLIYTSTVNVAFGGKPIEQGDED 162
>gi|239745448 PREDICTED: hypothetical protein XP_002343493 [Homo
sapiens]
Length = 422
Score = 36.2 bits (82), Expect = 0.057
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 26/143 (18%)
Query: 88 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV-- 145
R+++L+TGG G++G L L G V ++D R W + I DV
Sbjct: 33 RQKVLVTGGGGYLGFSLGSHLAKSGTSVILLD-------RRRPQWELSPETKFIQADVRD 85
Query: 146 VEPLYIE---VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLG-------LAKRVGA 195
E LY VD ++H+AS Y + + L+ I ++N+ G +R
Sbjct: 86 EEALYRAFEGVDCVFHVAS------YGMSGAEKLQKEQIESINVGGTKLVIDVCVRRRVP 139
Query: 196 RLLLASTSEV-YGDPEVHPQSED 217
RL+ ST V +G + ED
Sbjct: 140 RLIYTSTVNVAFGGKPIEQGDED 162
>gi|116268111 short chain dehydrogenase/reductase family 42E, member
1 [Homo sapiens]
Length = 393
Score = 33.5 bits (75), Expect = 0.37
Identities = 48/225 (21%), Positives = 85/225 (37%), Gaps = 27/225 (12%)
Query: 88 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE 147
++ +LITGG+G+ G L L +G V + D + + + I ++ + VE
Sbjct: 8 KESVLITGGSGYFGFRLGCALNQNGVHVILFD--ISSPAQTIPEGIKFIQGDIRHLSDVE 65
Query: 148 PLYIEVDQ--IYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSE 204
+ + D ++H+AS N + N GT N+L + +R RL+ ST
Sbjct: 66 KAFQDADVTCVFHIASYGMSGREQLNRNLIKEVNVRGTDNILQVCQRRRVPRLVYTSTFN 125
Query: 205 VYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGP 264
V +V ++ ++ Y K +AE ++
Sbjct: 126 VIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAE----------------QKVLEANAT 169
Query: 265 RMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGL 309
+ DG +L+ P +YG G Q + VS + GL
Sbjct: 170 PLDRGDG------VLRTCALRPAGIYGPGEQRHLPRIVSYIEKGL 208
>gi|28558975 mediator complex subunit 17 [Homo sapiens]
Length = 651
Score = 32.0 bits (71), Expect = 1.1
Identities = 44/199 (22%), Positives = 88/199 (44%), Gaps = 27/199 (13%)
Query: 163 ASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHV 222
+ P + N I +L+++ ++ AK + R A+T + PQ + +W ++
Sbjct: 408 SGPQAFDKNEINSLQSSEGLLEKIIKQAKHIFLRSRAAATIDSLASRIEDPQIQAHWSNI 467
Query: 223 NPIGPRACYDEGKRVA------ETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVS- 275
N + Y+ +V E +C + Q + V R+ + DGRV++
Sbjct: 468 NDV-----YESSVKVLITSQGYEQICKSIQLQLNIGVEQIRVVH--------RDGRVITL 514
Query: 276 NFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVS-SPV-NLGNPEEHTIL- 332
++ Q LQ + L S Q A Q ++ ++ V +++V P+ ++GN T+
Sbjct: 515 SYQEQELQ-DFLLSQMSQHQVHAVQQLAKVMGWQVLSFSNHVGLGPIESIGNASAITVAS 573
Query: 333 ---EFAQLIKNLVGSGSEI 348
++A ++N SGS+I
Sbjct: 574 PSGDYAISVRNGPESGSKI 592
>gi|19923959 serine dehydratase-like [Homo sapiens]
Length = 329
Score = 31.6 bits (70), Expect = 1.4
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 320 PVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVP 379
P + PE ++ Q+++ L G G+E+Q + D+ R ++ K GWE V P
Sbjct: 89 PATIVLPESTSL----QVVQRLQGEGAEVQLTGKVWDEANLRAQELAKRD---GWENVPP 141
Query: 380 LEEGL 384
+ L
Sbjct: 142 FDHPL 146
>gi|91105174 CD19 antigen [Homo sapiens]
Length = 556
Score = 30.8 bits (68), Expect = 2.4
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 162 PASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGH 221
P S P Y + +L T T G LG A+R A L T+ YG+P Q++ G
Sbjct: 340 PGSGPQNQYGNVLSLPTPTSG----LGRAQRWAAGL--GGTAPSYGNPSSDVQADGALGS 393
Query: 222 VNPIGPRACYDEGKRVAE 239
+P G +EG+ E
Sbjct: 394 RSPPGVGPEEEEGEGYEE 411
>gi|118766328 transmembrane and tetratricopeptide repeat containing
4 isoform 2 [Homo sapiens]
Length = 741
Score = 30.0 bits (66), Expect = 4.1
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 19 KLLLG-IALLAYVASVWGNFV--NMRSIQENGELKIESKIEEMVEPLREKIRDLEKSFTQ 75
KL++G +A++ + S G+FV + +I N +L+ E+ + ++ R + +
Sbjct: 23 KLVVGSVAIVCFARSYDGDFVFDDSEAIVNNKDLQAETPLGDLWHHDFWGSRLSSNTSHK 82
Query: 76 KYPPVKFLSEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF 121
Y P+ L+ R ++GG VG H+ + L+ G V +VD F
Sbjct: 83 SYRPLTVLTF--RINYYLSGGFHPVGFHVVNILLHSGISVLMVDVF 126
>gi|118766330 transmembrane and tetratricopeptide repeat containing
4 isoform 1 [Homo sapiens]
Length = 760
Score = 30.0 bits (66), Expect = 4.1
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 19 KLLLG-IALLAYVASVWGNFV--NMRSIQENGELKIESKIEEMVEPLREKIRDLEKSFTQ 75
KL++G +A++ + S G+FV + +I N +L+ E+ + ++ R + +
Sbjct: 42 KLVVGSVAIVCFARSYDGDFVFDDSEAIVNNKDLQAETPLGDLWHHDFWGSRLSSNTSHK 101
Query: 76 KYPPVKFLSEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF 121
Y P+ L+ R ++GG VG H+ + L+ G V +VD F
Sbjct: 102 SYRPLTVLTF--RINYYLSGGFHPVGFHVVNILLHSGISVLMVDVF 145
>gi|91754185 hypothetical protein LOC254268 [Homo sapiens]
Length = 836
Score = 30.0 bits (66), Expect = 4.1
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 54 KIEEMVEPLREKIRDLEKSFTQKYP----PVKFLSEK--DRKRILITGGAGFVGSHLTDK 107
K++E + L+ K+++ K Q P K + EK +L HLT +
Sbjct: 383 KLKEQTDQLKTKVQEFSKRIKQDSPYHLQDKKLVLEKLQGHLELLEQNFLATKDKHLTLQ 442
Query: 108 LMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASP 165
+ HE T+V +F RK E + E++ DV E ++D+ + ++P+ P
Sbjct: 443 QQVHKHESTIVGDFDPERKVEGEIF----KLEMLLEDVKE----KMDESKYTSAPSLP 492
>gi|19923642 Hermansky-Pudlak syndrome 3 protein [Homo sapiens]
Length = 1004
Score = 29.3 bits (64), Expect = 7.0
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 126 KRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNP 172
+R + +I H +E ++ ++ E L +V Q++++A P P+ + +P
Sbjct: 603 ERGLIFYINHSLYENLDEELNEELAAKVVQMFYVAEPKQVPHILCSP 649
>gi|26638659 mitochondrial ribosomal protein L40 [Homo sapiens]
Length = 206
Score = 29.3 bits (64), Expect = 7.0
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 28 AYVASVWGNFVNMRSIQENGELKIE-SKIEEMVEPLREKIRDLEKSFTQKYP------PV 80
A + S W + MRS + K++ K +E E L+ KIR LEK+ + P P+
Sbjct: 34 ASLLSFW-ELIPMRSEPLRKKKKVDPKKDQEAKERLKRKIRKLEKATQELIPIEDFITPL 92
Query: 81 KFLSE-KDRKRILIT 94
KFL + ++R ++ +T
Sbjct: 93 KFLDKARERPQVELT 107
>gi|157502184 kinesin family member 6 [Homo sapiens]
Length = 814
Score = 28.9 bits (63), Expect = 9.1
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 38 VNMRSIQENGELKIESKIEEMVEPLRE----KIRDLEKSFTQKYPPVKFLSEKDRKR 90
+N + I EN + ESK ++ EPL+E K+RD+ K + + + +K++K+
Sbjct: 432 LNDKKILENNTVSSESKDQDCQEPLKEEEYRKLRDILKQRDNEINILVNMLKKEKKK 488
>gi|71274152 hypothetical protein LOC388939 [Homo sapiens]
Length = 1288
Score = 28.9 bits (63), Expect = 9.1
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 358 PQKRKPDIKKA------KLMLGWEPVVPLEEGLNKAIHYFRKEL--EYQANNQYIPKP 407
P KP I A K+ +GW+P+ P+ L KA +EL E + N +++P P
Sbjct: 776 PLYPKPQISPASGRESLKMGIGWKPLAPIFPPLPKAEAAKSEELSCEMEGNLEHLPPP 833
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,859,625
Number of Sequences: 37866
Number of extensions: 712551
Number of successful extensions: 1981
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1951
Number of HSP's gapped (non-prelim): 29
length of query: 420
length of database: 18,247,518
effective HSP length: 105
effective length of query: 315
effective length of database: 14,271,588
effective search space: 4495550220
effective search space used: 4495550220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.