Guide to the Human Genome
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Name: TSTA3 Sequence: fasta or formatted (321aa) NCBI GI: 4507709
Description:

tissue specific transplantation antigen P35B

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         24           2
 C cysteine            1.2          4           1
 D aspartate           5.9         19           1
 E glutamate           5.6         18           2
 F phenylalanine       6.2         20           1
 G glycine             7.5         24           2
 H histidine           3.4         11           1
 I isoleucine          5.0         16           2
 K lysine              5.9         19           2
 L leucine             6.5         21           1
 M methionine          2.2          7           1
 N asparagine          5.0         16           1
 P proline             4.4         14           2
 Q glutamine           3.7         12           2
 R arginine            4.0         13           2
 S serine              5.6         18           2
 T threonine           6.9         22           2
 V valine              8.7         28           2
 W tryptophan          1.6          5           1
 Y tyrosine            3.1         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tissue specific transplantation antigen P35B 
UXS1                  0.076   UDP-glucuronate decarboxylase 1 
TGDS                  0.052   TDP-glucose 4,6-dehydratase 
GALE                  0.024   UDP-galactose-4-epimerase 
GALE                  0.024   UDP-galactose-4-epimerase 
GALE                  0.024   UDP-galactose-4-epimerase 
FCHO2                 0.008   FCH domain only 2 isoform a 
MAT2B                 0.008   methionine adenosyltransferase II, beta isoform 2 [H...
MAT2B                 0.008   methionine adenosyltransferase II, beta isoform 1 [H...
CAMKK1                0.008   calcium/calmodulin-dependent protein kinase 1 alpha ...
CAMKK1                0.008   calcium/calmodulin-dependent protein kinase 1 alpha...
CAMKK1                0.008   calcium/calmodulin-dependent protein kinase 1 alpha ...
C1orf43               0.006   hypothetical protein LOC25912 isoform 1 
C1orf43               0.006   hypothetical protein LOC25912 isoform 2 
C1orf43               0.006   hypothetical protein LOC25912 isoform 3 
PDZRN3                0.006   PDZ domain containing ring finger 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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