Guide to the Human Genome
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Name: SDR39U1 Sequence: fasta or formatted (293aa) NCBI GI: 116812630
Description:

short chain dehydrogenase/reductase family 39U, member 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         34           3
 C cysteine            0.3          1           1
 D aspartate           2.7          8           1
 E glutamate           4.8         14           1
 F phenylalanine       4.1         12           2
 G glycine            12.3         36           3
 H histidine           2.4          7           1
 I isoleucine          4.4         13           1
 K lysine              2.7          8           1
 L leucine            11.6         34           2
 M methionine          1.4          4           1
 N asparagine          3.1          9           1
 P proline             6.1         18           2
 Q glutamine           4.4         13           1
 R arginine            5.8         17           2
 S serine              4.8         14           2
 T threonine           6.1         18           2
 V valine              7.8         23           3
 W tryptophan          1.7          5           1
 Y tyrosine            1.7          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   short chain dehydrogenase/reductase family 39U, mem... 
UXS1                  0.021   UDP-glucuronate decarboxylase 1 
TP53I3                0.009   tumor protein p53 inducible protein 3 
TP53I3                0.009   tumor protein p53 inducible protein 3 
MUC5AC                0.007   mucin 5AC 
LOC100291299          0.007   PREDICTED: hypothetical protein XP_002347506 
LOC100287558          0.007   PREDICTED: hypothetical protein XP_002343325 
PECR                  0.007   peroxisomal trans-2-enoyl-CoA reductase 
MUC5B                 0.007   mucin 5, subtype B, tracheobronchial 
FAIM2                 0.007   Fas apoptotic inhibitory molecule 2 
CBR4                  0.007   carbonic reductase 4 
UGT3A2                0.005   UDP glycosyltransferase 3 family, polypeptide A2 [Ho...
LTK                   0.005   leukocyte receptor tyrosine kinase isoform 1 precurs...
LTK                   0.005   leukocyte receptor tyrosine kinase isoform 2 precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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