Search of human proteins with 41281462

Search of human proteins with 41281462

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|41281462 autophagy-related protein 13 isoform 2 [Homo
sapiens]
         (480 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|41281462 autophagy-related protein 13 isoform 2 [Homo sapiens]     964   0.0  
gi|218082953 autophagy-related protein 13 isoform 1 [Homo sapiens]    945   0.0  
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]          37   0.040
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]          37   0.040
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]          37   0.040
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]       33   0.57 
gi|4507161 SRY-box 11 [Homo sapiens]                                   33   0.75 
gi|153792230 hypothetical protein LOC57670 [Homo sapiens]              33   0.75 
gi|73858570 serpin peptidase inhibitor, clade G, member 1 precur...    32   0.98 
gi|73858568 serpin peptidase inhibitor, clade G, member 1 precur...    32   0.98 
gi|117938270 jumpy isoform 2 [Homo sapiens]                            32   0.98 
gi|126157477 hypothetical protein LOC79680 [Homo sapiens]              32   0.98 
gi|163965366 nascent polypeptide-associated complex alpha subuni...    32   1.3  
gi|237681196 FEZ family zinc finger 1 isoform 2 [Homo sapiens]         32   1.7  
gi|237681194 FEZ family zinc finger 1 isoform 1 [Homo sapiens]         32   1.7  
gi|53759148 retinoblastoma binding protein 5 [Homo sapiens]            32   1.7  
gi|169205253 PREDICTED: hypothetical protein [Homo sapiens]            31   2.2  
gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax ...    31   2.2  
gi|27735129 hypothetical protein LOC148345 [Homo sapiens]              31   2.2  
gi|60302877 shugoshin-like 1 isoform B1 [Homo sapiens]                 31   2.2  
gi|60302875 shugoshin-like 1 isoform A1 [Homo sapiens]                 31   2.2  
gi|60302873 shugoshin-like 1 isoform B2 [Homo sapiens]                 31   2.2  
gi|60302870 shugoshin-like 1 isoform A2 [Homo sapiens]                 31   2.2  
gi|13994253 Golgi reassembly stacking protein 1 [Homo sapiens]         31   2.2  
gi|33620755 YEATS domain containing 2 [Homo sapiens]                   31   2.2  
gi|161019170 mucin 5AC [Homo sapiens]                                  30   3.7  
gi|32528306 replication factor C large subunit [Homo sapiens]          30   3.7  
gi|5454140 tumor susceptibility gene 101 [Homo sapiens]                30   3.7  
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof...    30   3.7  
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof...    30   3.7  

>gi|41281462 autophagy-related protein 13 isoform 2 [Homo sapiens]
          Length = 480

 Score =  964 bits (2491), Expect = 0.0
 Identities = 480/480 (100%), Positives = 480/480 (100%)

Query: 1   METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE 60
           METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
Sbjct: 1   METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE 60

Query: 61  VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR 120
           VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
Sbjct: 61  VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR 120

Query: 121 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV 180
           LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
Sbjct: 121 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV 180

Query: 181 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV 240
           GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
Sbjct: 181 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV 240

Query: 241 IYPSVEDSQEVCTTSFSTSPPSQLMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRT 300
           IYPSVEDSQEVCTTSFSTSPPSQLMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRT
Sbjct: 241 IYPSVEDSQEVCTTSFSTSPPSQLMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRT 300

Query: 301 HCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMF 360
           HCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMF
Sbjct: 301 HCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMF 360

Query: 361 APKNLELEDTDPMVNPPDSPETESPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDD 420
           APKNLELEDTDPMVNPPDSPETESPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDD
Sbjct: 361 APKNLELEDTDPMVNPPDSPETESPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDD 420

Query: 421 ILPMDLGTFYREFQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ 480
           ILPMDLGTFYREFQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
Sbjct: 421 ILPMDLGTFYREFQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ 480


>gi|218082953 autophagy-related protein 13 isoform 1 [Homo sapiens]
          Length = 517

 Score =  945 bits (2443), Expect = 0.0
 Identities = 480/517 (92%), Positives = 480/517 (92%), Gaps = 37/517 (7%)

Query: 1   METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE 60
           METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
Sbjct: 1   METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE 60

Query: 61  VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR 120
           VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
Sbjct: 61  VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR 120

Query: 121 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV 180
           LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
Sbjct: 121 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV 180

Query: 181 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV 240
           GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
Sbjct: 181 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV 240

Query: 241 IYPSVEDSQEVCTTSFSTSPPS-------------------------------------Q 263
           IYPSVEDSQEVCTTSFSTSPPS                                     Q
Sbjct: 241 IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ 300

Query: 264 LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA 323
           LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
Sbjct: 301 LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA 360

Query: 324 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE 383
           SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
Sbjct: 361 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE 420

Query: 384 SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS 443
           SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
Sbjct: 421 SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS 480

Query: 444 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ 480
           IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
Sbjct: 481 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ 517


>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
          Length = 2790

 Score = 37.0 bits (84), Expect = 0.040
 Identities = 45/185 (24%), Positives = 72/185 (38%), Gaps = 24/185 (12%)

Query: 268  GKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRASPHD 327
            G EG +P  P+     +QA+  +     P ++   + +P+ + D   +S SS+   + H 
Sbjct: 1948 GPEGPLPEPPDGE-ELSQAEATKAGGKEPEEKATPSPSPAHTCDQCAISFSSQDLLTSHR 2006

Query: 328  VLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETESPLQ 387
             L          F+           LD+P  +F  +N  +  T PM  PP   + E    
Sbjct: 2007 RLH---------FLPSLQPSAPPQLLDLPLLVFGERNPLVAATSPMPGPPLKRKHE---D 2054

Query: 388  GSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREF---QNPPQ--LSSL 442
            GSL   GS  G  G           +    +  ILP  L   YR +    NP +  L  +
Sbjct: 2055 GSLSPTGSEAGGGGEGEPP------RDKRLRTTILPEQLEILYRWYMQDSNPTRKMLDCI 2108

Query: 443  SIDIG 447
            S ++G
Sbjct: 2109 SEEVG 2113


>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
          Length = 2706

 Score = 37.0 bits (84), Expect = 0.040
 Identities = 45/185 (24%), Positives = 72/185 (38%), Gaps = 24/185 (12%)

Query: 268  GKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRASPHD 327
            G EG +P  P+     +QA+  +     P ++   + +P+ + D   +S SS+   + H 
Sbjct: 1864 GPEGPLPEPPDGE-ELSQAEATKAGGKEPEEKATPSPSPAHTCDQCAISFSSQDLLTSHR 1922

Query: 328  VLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETESPLQ 387
             L          F+           LD+P  +F  +N  +  T PM  PP   + E    
Sbjct: 1923 RLH---------FLPSLQPSAPPQLLDLPLLVFGERNPLVAATSPMPGPPLKRKHE---D 1970

Query: 388  GSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREF---QNPPQ--LSSL 442
            GSL   GS  G  G           +    +  ILP  L   YR +    NP +  L  +
Sbjct: 1971 GSLSPTGSEAGGGGEGEPP------RDKRLRTTILPEQLEILYRWYMQDSNPTRKMLDCI 2024

Query: 443  SIDIG 447
            S ++G
Sbjct: 2025 SEEVG 2029


>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
          Length = 2706

 Score = 37.0 bits (84), Expect = 0.040
 Identities = 45/185 (24%), Positives = 72/185 (38%), Gaps = 24/185 (12%)

Query: 268  GKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRASPHD 327
            G EG +P  P+     +QA+  +     P ++   + +P+ + D   +S SS+   + H 
Sbjct: 1864 GPEGPLPEPPDGE-ELSQAEATKAGGKEPEEKATPSPSPAHTCDQCAISFSSQDLLTSHR 1922

Query: 328  VLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETESPLQ 387
             L          F+           LD+P  +F  +N  +  T PM  PP   + E    
Sbjct: 1923 RLH---------FLPSLQPSAPPQLLDLPLLVFGERNPLVAATSPMPGPPLKRKHE---D 1970

Query: 388  GSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREF---QNPPQ--LSSL 442
            GSL   GS  G  G           +    +  ILP  L   YR +    NP +  L  +
Sbjct: 1971 GSLSPTGSEAGGGGEGEPP------RDKRLRTTILPEQLEILYRWYMQDSNPTRKMLDCI 2024

Query: 443  SIDIG 447
            S ++G
Sbjct: 2025 SEEVG 2029


>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
          Length = 5765

 Score = 33.1 bits (74), Expect = 0.57
 Identities = 43/164 (26%), Positives = 58/164 (35%), Gaps = 14/164 (8%)

Query: 243  PSVEDSQEVCTTSFSTSPPSQLMVPGKEGGVPLAPNQPVHGTQADQERL--ATCTPSDRT 300
            PS+  +    T + ST+ PS    PG        P  PV  T A       +T TPS   
Sbjct: 3391 PSLTTTATTITATGSTTNPSS--TPGT------TPIPPVLTTTATTPAATSSTVTPSSAL 3442

Query: 301  HCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMF 360
                TP     T T    S   +SPH V         G      I + +  +   P A  
Sbjct: 3443 GTTHTPPVPNTTATTHGRSLPPSSPHTVRTAWTSATSGILGTTHITEPSTVTSHTPAATT 3502

Query: 361  APKNLELEDTDPMVNP-PDSPETESPLQGSLHSDGSSGGSSGNT 403
            +        T  + +P P S  TESP      + G + G+S  T
Sbjct: 3503 STTQ---HSTPALSSPHPSSRTTESPPSPGTTTPGHTRGTSRTT 3543



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 42/164 (25%), Positives = 56/164 (34%), Gaps = 14/164 (8%)

Query: 243  PSVEDSQEVCTTSFSTSPPSQLMVPGKEGGVPLAPNQPVHGTQADQERL--ATCTPSDRT 300
            PS+  +    T + ST+ PS    PG        P  PV  T A       +T TPS   
Sbjct: 2691 PSLTTTATTITATGSTTNPSS--TPGT------TPIPPVLTTTATTPAATSSTVTPSSAL 2742

Query: 301  HCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMF 360
                TP     T T    S   +SPH V         G      I + +  +   P A  
Sbjct: 2743 GTTHTPPVPNTTATTHGRSLSPSSPHTVRTAWTSATSGTLGTTHITEPSTGTSHTPAATT 2802

Query: 361  APKNLELEDTDPMVNP-PDSPETESPLQGSLHSDGSSGGSSGNT 403
                     T  + +P P S  TESP      + G +  +S  T
Sbjct: 2803 GTTQ---HSTPALSSPHPSSRTTESPPSPGTTTPGHTRATSRTT 2843



 Score = 30.0 bits (66), Expect = 4.9
 Identities = 42/164 (25%), Positives = 56/164 (34%), Gaps = 14/164 (8%)

Query: 243  PSVEDSQEVCTTSFSTSPPSQLMVPGKEGGVPLAPNQPVHGTQADQERL--ATCTPSDRT 300
            PS+  +    T + ST+ PS    PG        P  PV  T A       +T TPS   
Sbjct: 3948 PSLITTATTITATGSTTNPSS--TPGT------TPIPPVLTTTATTPAATSSTVTPSSAL 3999

Query: 301  HCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMF 360
                TP     T T    S   +SPH V         G      I + +  +   P A  
Sbjct: 4000 GTTHTPPVPNTTATTHGRSLSPSSPHTVRTAWTSATSGTLGTTHITEPSTGTSHTPAATT 4059

Query: 361  APKNLELEDTDPMVNP-PDSPETESPLQGSLHSDGSSGGSSGNT 403
                     T  + +P P S  TESP      + G +  +S  T
Sbjct: 4060 GTTQ---HSTPALSSPHPSSRTTESPPSPGTTTPGHTTATSRTT 4100


>gi|4507161 SRY-box 11 [Homo sapiens]
          Length = 441

 Score = 32.7 bits (73), Expect = 0.75
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 363 KNLELEDTDPMVNPPDSP-ETESPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSK 418
           KN+  +   P+  P  SP  + S    S  S GSS GSSG   DD +M D    FS+
Sbjct: 316 KNITKQHPPPLAQPALSPASSRSVSTSSSSSSGSSSGSSGEDADD-LMFDLSLNFSQ 371


>gi|153792230 hypothetical protein LOC57670 [Homo sapiens]
          Length = 1884

 Score = 32.7 bits (73), Expect = 0.75
 Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 22/194 (11%)

Query: 256 FSTSPPSQLMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETV 315
           F+T  PS+ +VP     + ++        + D   + T          + P+S + T   
Sbjct: 431 FNTLFPSRPIVPLSSRSMEISETSVGISAEVDMSSVTTTQVPPAHGRLSVPASLDPTAGS 490

Query: 316 SNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNL-ELEDTDPMV 374
            + +E + +P  V    F            + +T   LD  F++ A KN   L   DP V
Sbjct: 491 LSVAETQVTPSSVTTAFF------------SVITSILLDSSFSVIANKNTPSLAVRDPSV 538

Query: 375 NPPDS--PETESPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYRE 432
             P S  P  ES    SL SD     SS + H     +DF  +F     L +  G+    
Sbjct: 539 FTPYSLVPSVES----SLFSDQER--SSFSEHKPRGALDFASSFFSTPPLELS-GSISSP 591

Query: 433 FQNPPQLSSLSIDI 446
            + P  LS +  D+
Sbjct: 592 SEAPASLSLMPSDL 605


>gi|73858570 serpin peptidase inhibitor, clade G, member 1 precursor
           [Homo sapiens]
          Length = 500

 Score = 32.3 bits (72), Expect = 0.98
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 304 ATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPK 363
           AT SSS+D E++ +  EG+ +   + + +FV  +    + P    T  S     A    +
Sbjct: 26  ATSSSSQDPESLQDRGEGKVATTVISKMLFVEPILEVSSLPTTNSTTNSATKITANTTDE 85

Query: 364 NLELEDTDPMVNP---PDSPETESP 385
                 T+P   P   P  P T+ P
Sbjct: 86  PTTQPTTEPTTQPTIQPTQPTTQLP 110


>gi|73858568 serpin peptidase inhibitor, clade G, member 1 precursor
           [Homo sapiens]
          Length = 500

 Score = 32.3 bits (72), Expect = 0.98
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 304 ATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPK 363
           AT SSS+D E++ +  EG+ +   + + +FV  +    + P    T  S     A    +
Sbjct: 26  ATSSSSQDPESLQDRGEGKVATTVISKMLFVEPILEVSSLPTTNSTTNSATKITANTTDE 85

Query: 364 NLELEDTDPMVNP---PDSPETESP 385
                 T+P   P   P  P T+ P
Sbjct: 86  PTTQPTTEPTTQPTIQPTQPTTQLP 110


>gi|117938270 jumpy isoform 2 [Homo sapiens]
          Length = 650

 Score = 32.3 bits (72), Expect = 0.98
 Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 375 NPPDSPETESPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQ 434
           N P   E   P Q  L    SS  SS N  D+F  +   P                R   
Sbjct: 492 NRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKP----------RSVD 541

Query: 435 NPPQLSSLSIDIGAQSMAEDLDSLPEKLAVH 465
           +P   SSLS D G+  M     S+ E+  +H
Sbjct: 542 HPLPGSSLSTDYGSWQMVTGCGSIQERAVLH 572


>gi|126157477 hypothetical protein LOC79680 [Homo sapiens]
          Length = 364

 Score = 32.3 bits (72), Expect = 0.98
 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 219 PYPSSSPMHPCNYRTAGEDTGVIYPSVEDSQEVCTT-----SFSTSPPSQLMVPGKEGG- 272
           P P   P+ P +  T     G + P+    +E   T     S S +PP+Q   P   GG 
Sbjct: 265 PGPKEPPVLPSS--TCSSKPGPVEPASSQPEEAAPTPVPRLSESANPPAQRPDPAHPGGP 322

Query: 273 VPLAPNQPVHGTQADQERLATCTPSDRTHCAATP 306
            P    + V  T+ DQE ++  TP +      TP
Sbjct: 323 KPQKTEEEVLETEGDQE-VSLGTPQEVVEAPETP 355


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 34/135 (25%), Positives = 46/135 (34%), Gaps = 14/135 (10%)

Query: 204  TPPIMGIIIDHFVDRPYPSSSPMHPCNY-------RTAGEDTGVIYPSVEDSQEVCTTSF 256
            TPP  G      V  P P  +P  P           T     G   P+   S +      
Sbjct: 1326 TPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMT 1385

Query: 257  STSPPSQLMVPGKEGG------VPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSE 310
              SP     +P  +G       +PL+P +    T   +E  AT +  D T  A TP S +
Sbjct: 1386 PPSPKRGPAIPSPKGDPTSPAVIPLSPKK-APATPVTREGAATPSKGDLTPPAVTPVSLK 1444

Query: 311  DTETVSNSSEGRASP 325
                 S    G A+P
Sbjct: 1445 KAPATSAPKGGPATP 1459


>gi|237681196 FEZ family zinc finger 1 isoform 2 [Homo sapiens]
          Length = 425

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 21/85 (24%), Positives = 30/85 (35%)

Query: 193 LAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGVIYPSVEDSQEVC 252
           LAF   R   RTP    + + HF+    P   P H  +  ++        P   D+    
Sbjct: 29  LAFSIERIMARTPEPKALPVPHFLQGALPKGEPKHSLHLNSSIPCMIPFVPVAYDTSPKA 88

Query: 253 TTSFSTSPPSQLMVPGKEGGVPLAP 277
             + S    + L  P     VP AP
Sbjct: 89  GVTGSEPRKASLEAPAAPAAVPSAP 113


>gi|237681194 FEZ family zinc finger 1 isoform 1 [Homo sapiens]
          Length = 475

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 21/85 (24%), Positives = 30/85 (35%)

Query: 193 LAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGVIYPSVEDSQEVC 252
           LAF   R   RTP    + + HF+    P   P H  +  ++        P   D+    
Sbjct: 29  LAFSIERIMARTPEPKALPVPHFLQGALPKGEPKHSLHLNSSIPCMIPFVPVAYDTSPKA 88

Query: 253 TTSFSTSPPSQLMVPGKEGGVPLAP 277
             + S    + L  P     VP AP
Sbjct: 89  GVTGSEPRKASLEAPAAPAAVPSAP 113


>gi|53759148 retinoblastoma binding protein 5 [Homo sapiens]
          Length = 538

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 12/61 (19%)

Query: 347 QVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETESP-----------LQGSLHSDGS 395
           +V +TS+D P A F   + ELED+  ++  P +PE E P           +Q SL  +G+
Sbjct: 374 EVDVTSVD-PIAAFCSSDEELEDSKALLYLPIAPEVEDPEENPYGPPPDAVQTSLMDEGA 432

Query: 396 S 396
           S
Sbjct: 433 S 433


>gi|169205253 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 3859

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 50/184 (27%), Positives = 67/184 (36%), Gaps = 33/184 (17%)

Query: 221  PSSSPMHPCNYRTAGEDTGVIYPSVEDSQEVCTTSFSTS-----PPSQLMVPGKEGGVPL 275
            P+ SP+ P        D  V+  S++D   V  T    S     P + L+VP      P+
Sbjct: 3210 PADSPVVP----DPSSDGPVVADSLDDDGLVPVTPADDSVVPDSPANGLVVPDPTTDGPV 3265

Query: 276  APNQPVHG-----TQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRASPHDVLE 330
            AP+  V G     T AD   ++  T +D      TP    D   VS+S  G         
Sbjct: 3266 APDPSVDGPVVPVTPADAPTVSV-TLADCPDVTVTP---PDGLVVSDSKRGGPV------ 3315

Query: 331  TIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSP-ETESPLQGS 389
                   G   N P+  +T T  D       P + E     P  N PD P   ESP+   
Sbjct: 3316 -----VTGLSTNDPV--ITATPADFSDVTVTPADFEDVPVTP-ANCPDVPVNPESPVVSD 3367

Query: 390  LHSD 393
            L  D
Sbjct: 3368 LAVD 3371


>gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax
           homolog 2 [Homo sapiens]
          Length = 1210

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 38/162 (23%), Positives = 61/162 (37%), Gaps = 32/162 (19%)

Query: 245 VEDSQEVCTTSFSTSPPSQLMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAA 304
           + DS++  +      PPS    P     +P  P    H + A+ E   + + SD      
Sbjct: 429 LSDSEDSDSEQTPEKPPSSSAPPSAPQSLP-EPVASAHSSSAESE---STSDSD------ 478

Query: 305 TPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKN 364
              SS D+E+ S+SS+  +  ++ LET          NK      LT +  P A      
Sbjct: 479 ---SSSDSESESSSSD--SEENEPLETPAPEPEPPTTNKWQLDNWLTKVSQPAA------ 527

Query: 365 LELEDTDPMVNPPDSPETESPLQGSLHSDGSSGGSSGNTHDD 406
                      PP+ P +  P +    S GSS  ++   H +
Sbjct: 528 -----------PPEGPRSTEPPRRHPESKGSSDSATSQEHSE 558


>gi|27735129 hypothetical protein LOC148345 [Homo sapiens]
          Length = 656

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 235 GEDTGVIYPSVEDSQEVCTTSFSTSPPSQLMVPGKEGGVPLAPNQPVHGTQADQERLATC 294
           G+ +  I P V  +Q          PP +  +PG        P++PV G QA   R    
Sbjct: 279 GQTSASILPRVVQAQRG-----PQPPPGEAGIPGHPTPPATLPSEPVEGVQASPWRPRPV 333

Query: 295 TPSDRTHCAATPSSSEDTETVSNSSEGRASPHDVL 329
            P   TH A T   S D  + S  +     P  +L
Sbjct: 334 LP---THPALTLPVSSDASSPSPPAPRPERPESLL 365


>gi|60302877 shugoshin-like 1 isoform B1 [Homo sapiens]
          Length = 275

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 18  KFFALK---TVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPEVTHEAKKALAGQLP 74
           + +ALK   T Q  V+    ++IC+      +     NL +KD+P++  E       +LP
Sbjct: 95  QLYALKGKLTSQQTVEPAQNQEICSSGMDPNSDDSSRNLFVKDLPQIPLEET-----ELP 149

Query: 75  AVGRSMCVEISLKTSEGDSMELE 97
             G S  +E  + T   D++ ++
Sbjct: 150 GQGESFQIEDQIPTIPQDTLGVD 172


>gi|60302875 shugoshin-like 1 isoform A1 [Homo sapiens]
          Length = 527

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 18  KFFALK---TVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPEVTHEAKKALAGQLP 74
           + +ALK   T Q  V+    ++IC+      +     NL +KD+P++  E       +LP
Sbjct: 95  QLYALKGKLTSQQTVEPAQNQEICSSGMDPNSDDSSRNLFVKDLPQIPLEET-----ELP 149

Query: 75  AVGRSMCVEISLKTSEGDSMELE 97
             G S  +E  + T   D++ ++
Sbjct: 150 GQGESFQIEDQIPTIPQDTLGVD 172


>gi|60302873 shugoshin-like 1 isoform B2 [Homo sapiens]
          Length = 309

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 18  KFFALK---TVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPEVTHEAKKALAGQLP 74
           + +ALK   T Q  V+    ++IC+      +     NL +KD+P++  E       +LP
Sbjct: 95  QLYALKGKLTSQQTVEPAQNQEICSSGMDPNSDDSSRNLFVKDLPQIPLEET-----ELP 149

Query: 75  AVGRSMCVEISLKTSEGDSMELE 97
             G S  +E  + T   D++ ++
Sbjct: 150 GQGESFQIEDQIPTIPQDTLGVD 172


>gi|60302870 shugoshin-like 1 isoform A2 [Homo sapiens]
          Length = 561

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 18  KFFALK---TVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPEVTHEAKKALAGQLP 74
           + +ALK   T Q  V+    ++IC+      +     NL +KD+P++  E       +LP
Sbjct: 95  QLYALKGKLTSQQTVEPAQNQEICSSGMDPNSDDSSRNLFVKDLPQIPLEET-----ELP 149

Query: 75  AVGRSMCVEISLKTSEGDSMELE 97
             G S  +E  + T   D++ ++
Sbjct: 150 GQGESFQIEDQIPTIPQDTLGVD 172


>gi|13994253 Golgi reassembly stacking protein 1 [Homo sapiens]
          Length = 440

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 19/139 (13%)

Query: 212 IDHFVDRPYPSSSP----MHPCNYRTAG-----EDTGVIYPSVEDSQEVCTTSFSTSPPS 262
           + HF++ P     P    M P     +G          ++PS+  S E+ TT+ STS P 
Sbjct: 285 LPHFMETPLQPPPPVQRVMDPGFLDVSGISLLDNSNASVWPSLPSSTELTTTAVSTSGPE 344

Query: 263 QLMVPG---KEGGVPLAPNQPVH-------GTQADQERLATCTPSDRTHCAATPSSSEDT 312
            +       + GG                 G QA  + L   T  D    AA+P      
Sbjct: 345 DICSSSSSHERGGEATWSGSEFEVSFLDSPGAQAQADHLPQLTLPDSLTSAASPEDGLSA 404

Query: 313 ETVSNSSEGRASPHDVLET 331
           E +   +E   +  + L+T
Sbjct: 405 ELLEAQAEEEPASTEGLDT 423


>gi|33620755 YEATS domain containing 2 [Homo sapiens]
          Length = 1422

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 45/192 (23%), Positives = 74/192 (38%), Gaps = 32/192 (16%)

Query: 235 GEDTGVIYPSVEDSQEVCTTSFSTSPPS---QLMVPGKEGGVPLAPNQPVHGTQADQERL 291
           GED   IYP   +S        S +PPS    +  P K        ++PV  T  ++   
Sbjct: 335 GEDC--IYPQSSESD------ISDAPPSLPLTIPAPVKASSPIKQSHEPVPDTSVEKGFP 386

Query: 292 ATCTPSDRTHCAATPSSSEDTET-------VSNSSEGRASPHDVLETIFVRKVGAFVNKP 344
           A+      T   A PSS E T T       V+  S G ++   +  +           K 
Sbjct: 387 ASTEAERHTPFYALPSSLERTPTKMTTSQKVTFCSHGNSAFQPIASSC----------KI 436

Query: 345 INQVTLTSLDIPFAMFAP--KNLELEDTDPMVNPPDSPETESPLQGSLHSDGSSGGSSGN 402
           + Q  + + + P   F P   + ++    P+  P  SP   +P    +H    + GS  N
Sbjct: 437 VPQSQVPNPESPGKSFQPITMSCKIVSGSPISTPSPSPLPRTPTSTPVHVKQGTAGSVIN 496

Query: 403 THDDFVMIDFKP 414
             + +V++D +P
Sbjct: 497 --NPYVIMDKQP 506


>gi|161019170 mucin 5AC [Homo sapiens]
          Length = 6207

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 54/222 (24%), Positives = 75/222 (33%), Gaps = 42/222 (18%)

Query: 221  PSSSP--MHPCNYRTAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLMV-----PGKEGGV 273
            PSS+P  +H     T    T     SV        T+ +T  P+         P    G 
Sbjct: 3850 PSSTPETVHTSTVLTTTTTTTRATGSVATPSSTPGTAHTTKVPTTTTTGFTATPSSSPGT 3909

Query: 274  PLAPNQPVHGTQADQERLATCTPSD---RTHCA---------------ATPSSSEDTETV 315
             L P   +  T     R +T TPS     TH A               ATPSSS  T   
Sbjct: 3910 ALTPPVWISTTTTPTTRGSTVTPSSIPGTTHTATVLTTTTTTVATGSMATPSSSTQTSGT 3969

Query: 316  SN---------SSEGR----ASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAP 362
            ++         ++ GR    +SPH V         G      I + +  +   P A  + 
Sbjct: 3970 THTPPVPNTTATTHGRSLPPSSPHTVRTAWTSATSGILGTTHITEPSTVTSHTPAATTST 4029

Query: 363  KNLELEDTDPMVNP-PDSPETESPLQGSLHSDGSSGGSSGNT 403
                   T  + +P P S  TESP      + G + G+S  T
Sbjct: 4030 TQ---HSTPALSSPHPSSRTTESPPSPGTTTPGHTRGTSRTT 4068


>gi|32528306 replication factor C large subunit [Homo sapiens]
          Length = 1147

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 17/117 (14%)

Query: 240 VIYPSVEDSQEVCTTSFSTSPPSQLMVPGKEGGVPLAPNQPV-HGTQADQERLATCTPSD 298
           +IY S  +S+E      +  PP +L V  K G   ++   PV + ++ D+E        D
Sbjct: 65  IIYDSDSESEETLQVKNAKKPPEKLPVSSKPG--KISRQDPVTYISETDEE--------D 114

Query: 299 RTHCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDI 355
              C    S S++    +NS  G ++     E    +      NKP++ + LT   +
Sbjct: 115 DFMCKKAASKSKENGRSTNSHLGTSNMKKNEENTKTK------NKPLSPIKLTPTSV 165


>gi|5454140 tumor susceptibility gene 101 [Homo sapiens]
          Length = 390

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 219 PYPSSSPMHPCNYRTAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLMVPGKEGGV 273
           PYPS  P +P  Y       G  YP+   SQ      + + PP   + P ++G +
Sbjct: 173 PYPSGYPPNPSGYPGCPYPPGGPYPATTSSQ------YPSQPPVTTVGPSRDGTI 221


>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
            [Homo sapiens]
          Length = 6907

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 77   GRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNRLSLLLKSLLAITR 133
            G+ +   +S    EG   +LE   L +N+K D E+       +RL  LLK LL+  R
Sbjct: 4902 GKQLVASVSCPELEGQIAKLEEQWLSLNKKIDHEL-------HRLQALLKHLLSYNR 4951


>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
            [Homo sapiens]
          Length = 6885

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 77   GRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNRLSLLLKSLLAITR 133
            G+ +   +S    EG   +LE   L +N+K D E+       +RL  LLK LL+  R
Sbjct: 4902 GKQLVASVSCPELEGQIAKLEEQWLSLNKKIDHEL-------HRLQALLKHLLSYNR 4951


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,042,081
Number of Sequences: 37866
Number of extensions: 917225
Number of successful extensions: 3177
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 3064
Number of HSP's gapped (non-prelim): 169
length of query: 480
length of database: 18,247,518
effective HSP length: 106
effective length of query: 374
effective length of database: 14,233,722
effective search space: 5323412028
effective search space used: 5323412028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.