Guide to the Human Genome
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Search of human proteins with 40316910

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40316910 serum amyloid A1 preproprotein [Homo sapiens]
         (122 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|40316912 serum amyloid A1 preproprotein [Homo sapiens]             256   2e-69
gi|40316910 serum amyloid A1 preproprotein [Homo sapiens]             256   2e-69
gi|188497671 serum amyloid A2 isoform a [Homo sapiens]                241   1e-64
gi|188497687 serum amyloid A2 isoform b [Homo sapiens]                158   8e-40
gi|10835095 serum amyloid A4, constitutive [Homo sapiens]             141   1e-34
gi|153267448 enolase 3 [Homo sapiens]                                  28   1.7  
gi|153267427 enolase 3 [Homo sapiens]                                  28   1.7  
gi|4505219 matrix metalloproteinase 7 preproprotein [Homo sapiens]     27   4.9  
gi|20127454 5-aminoimidazole-4-carboxamide ribonucleotide formyl...    27   4.9  
gi|238859593 UDP-glucose ceramide glucosyltransferase-like 2 [Ho...    26   6.5  
gi|105990532 apolipoprotein B precursor [Homo sapiens]                 26   6.5  
gi|9910280 UDP-glucose ceramide glucosyltransferase-like 1 [Homo...    26   8.4  
gi|89276764 prostaglandin E receptor 3, subtype EP3 isoform 2 [H...    26   8.4  
gi|38505180 prostaglandin E receptor 3, subtype EP3 isoform 5 [H...    26   8.4  
gi|4758222 dual-specificity tyrosine-(Y)-phosphorylation regulat...    26   8.4  
gi|38505188 prostaglandin E receptor 3, subtype EP3 isoform 4 [H...    26   8.4  
gi|38505186 prostaglandin E receptor 3, subtype EP3 isoform 8 [H...    26   8.4  
gi|38505184 prostaglandin E receptor 3, subtype EP3 isoform 7 [H...    26   8.4  
gi|38505182 prostaglandin E receptor 3, subtype EP3 isoform 6 [H...    26   8.4  
gi|38505178 prostaglandin E receptor 3, subtype EP3 isoform 4 [H...    26   8.4  
gi|38505176 prostaglandin E receptor 3, subtype EP3 isoform 3 [H...    26   8.4  
gi|38505172 prostaglandin E receptor 3, subtype EP3 isoform 1 [H...    26   8.4  
gi|186659506 prostaglandin E receptor 3, subtype EP3 isoform 4 [...    26   8.4  
gi|160707881 formin 2 [Homo sapiens]                                   26   8.4  
gi|42740899 CTAGE family, member 5 isoform 3 [Homo sapiens]            26   8.4  
gi|42740897 CTAGE family, member 5 isoform 1 [Homo sapiens]            26   8.4  
gi|42740901 CTAGE family, member 5 isoform 4 [Homo sapiens]            26   8.4  
gi|42740905 CTAGE family, member 5 isoform 2 [Homo sapiens]            26   8.4  
gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens]      26   8.4  

>gi|40316912 serum amyloid A1 preproprotein [Homo sapiens]
          Length = 122

 Score =  256 bits (655), Expect = 2e-69
 Identities = 122/122 (100%), Positives = 122/122 (100%)

Query: 1   MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60
           MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
Sbjct: 1   MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60

Query: 61  DAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPE 120
           DAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPE
Sbjct: 61  DAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPE 120

Query: 121 KY 122
           KY
Sbjct: 121 KY 122


>gi|40316910 serum amyloid A1 preproprotein [Homo sapiens]
          Length = 122

 Score =  256 bits (655), Expect = 2e-69
 Identities = 122/122 (100%), Positives = 122/122 (100%)

Query: 1   MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60
           MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
Sbjct: 1   MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60

Query: 61  DAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPE 120
           DAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPE
Sbjct: 61  DAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPE 120

Query: 121 KY 122
           KY
Sbjct: 121 KY 122


>gi|188497671 serum amyloid A2 isoform a [Homo sapiens]
          Length = 122

 Score =  241 bits (615), Expect = 1e-64
 Identities = 115/122 (94%), Positives = 118/122 (96%)

Query: 1   MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60
           MKLLTGLVFCSLVL VSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
Sbjct: 1   MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60

Query: 61  DAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPE 120
           DAAKRGPGGAWAAEVIS+ARENIQR  G GAEDSLADQAAN+WGRSG+DPNHFRPAGLPE
Sbjct: 61  DAAKRGPGGAWAAEVISNARENIQRLTGRGAEDSLADQAANKWGRSGRDPNHFRPAGLPE 120

Query: 121 KY 122
           KY
Sbjct: 121 KY 122


>gi|188497687 serum amyloid A2 isoform b [Homo sapiens]
          Length = 83

 Score =  158 bits (400), Expect = 8e-40
 Identities = 76/77 (98%), Positives = 76/77 (98%)

Query: 1  MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60
          MKLLTGLVFCSLVL VSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
Sbjct: 1  MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60

Query: 61 DAAKRGPGGAWAAEVIS 77
          DAAKRGPGGAWAAEVIS
Sbjct: 61 DAAKRGPGGAWAAEVIS 77


>gi|10835095 serum amyloid A4, constitutive [Homo sapiens]
          Length = 130

 Score =  141 bits (355), Expect = 1e-34
 Identities = 71/130 (54%), Positives = 94/130 (72%), Gaps = 8/130 (6%)

Query: 1   MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60
           M+L TG+VFCSLV+GV+S S+ SF  EA  G  DM RAY D+  +N+  S++Y +ARGNY
Sbjct: 1   MRLFTGIVFCSLVMGVTSESWRSFFKEALQGVGDMGRAYWDIMISNHQNSNRYLYARGNY 60

Query: 61  DAAKRGPGGAWAAEVISDARENIQ-----RFFGHGA---EDSLADQAANEWGRSGKDPNH 112
           DAA+RGPGG WAA++IS +R  +Q       FG+ +   EDS +++ A EWGRSGKDP+ 
Sbjct: 61  DAAQRGPGGVWAAKLISRSRVYLQGLIDYYLFGNSSTVLEDSKSNEKAEEWGRSGKDPDR 120

Query: 113 FRPAGLPEKY 122
           FRP GLP+KY
Sbjct: 121 FRPDGLPKKY 130


>gi|153267448 enolase 3 [Homo sapiens]
          Length = 434

 Score = 28.1 bits (61), Expect = 1.7
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 12/95 (12%)

Query: 40  SDMREANYIGSDKYFHARG------NYDAAKRGPGGAWAAEVI--SDARENIQRFF-GHG 90
           S  +EA  IG++ Y H +G        DA   G  G +A  ++  ++A E ++      G
Sbjct: 176 SSFKEAMRIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAG 235

Query: 91  AEDSLA---DQAANEWGRSGKDPNHFRPAGLPEKY 122
             D +    D AA+E+ R+GK    F+    P ++
Sbjct: 236 YPDKVVIGMDVAASEFYRNGKYDLDFKSPDDPARH 270


>gi|153267427 enolase 3 [Homo sapiens]
          Length = 434

 Score = 28.1 bits (61), Expect = 1.7
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 12/95 (12%)

Query: 40  SDMREANYIGSDKYFHARG------NYDAAKRGPGGAWAAEVI--SDARENIQRFF-GHG 90
           S  +EA  IG++ Y H +G        DA   G  G +A  ++  ++A E ++      G
Sbjct: 176 SSFKEAMRIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAG 235

Query: 91  AEDSLA---DQAANEWGRSGKDPNHFRPAGLPEKY 122
             D +    D AA+E+ R+GK    F+    P ++
Sbjct: 236 YPDKVVIGMDVAASEFYRNGKYDLDFKSPDDPARH 270


>gi|4505219 matrix metalloproteinase 7 preproprotein [Homo sapiens]
          Length = 267

 Score = 26.6 bits (57), Expect = 4.9
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 71  WAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFR 114
           W ++V++    +  R   H   D L  +A N WG+  + P HFR
Sbjct: 104 WTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGK--EIPLHFR 145


>gi|20127454 5-aminoimidazole-4-carboxamide ribonucleotide
           formyltransferase/IMP cyclohydrolase [Homo sapiens]
          Length = 592

 Score = 26.6 bits (57), Expect = 4.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 48  IGSDKYFHARGNYDAAKR-------GPGGAWAAEVISDARENIQRFFGH 89
           I SD +F  R N D AKR        P G+ A +V+ +A + +     H
Sbjct: 536 ISSDAFFPFRDNVDRAKRSGVAYIAAPSGSAADKVVIEACDELGIILAH 584


>gi|238859593 UDP-glucose ceramide glucosyltransferase-like 2 [Homo
            sapiens]
          Length = 1516

 Score = 26.2 bits (56), Expect = 6.5
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 51   DKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLAD 97
            D    A   Y   K  PG AW   +     E+I +  GH   DS AD
Sbjct: 1122 DTIVMAHHGYFQLKANPG-AWILRLHQGKSEDIYQIVGHEGTDSQAD 1167


>gi|105990532 apolipoprotein B precursor [Homo sapiens]
          Length = 4563

 Score = 26.2 bits (56), Expect = 6.5
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 2    KLLTGLVFCSLVLGVSSRSFFSF--LGEAFDGARDMWRAYSDMR 43
            +L  G  + +++LGV S++ F+F    E    + DM  +Y++M+
Sbjct: 1707 ELSLGSAYQAMILGVDSKNIFNFKVSQEGLKLSNDMMGSYAEMK 1750


>gi|9910280 UDP-glucose ceramide glucosyltransferase-like 1 [Homo
            sapiens]
          Length = 1555

 Score = 25.8 bits (55), Expect = 8.4
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 45   ANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLAD 97
            AN +  D    A   Y   K  PG AW   +     E+I R + H   DS  D
Sbjct: 1138 ANPVIVDTIVMANLGYFQLKANPG-AWILRLRKGRSEDIYRIYSHDGTDSPPD 1189


>gi|89276764 prostaglandin E receptor 3, subtype EP3 isoform 2
          [Homo sapiens]
          Length = 402

 Score = 25.8 bits (55), Expect = 8.4
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAE 92
          M+E    G D  F  R N+        G WA E  ++AR N+ R  G G +
Sbjct: 1  MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46


>gi|38505180 prostaglandin E receptor 3, subtype EP3 isoform 5
          [Homo sapiens]
          Length = 388

 Score = 25.8 bits (55), Expect = 8.4
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAE 92
          M+E    G D  F  R N+        G WA E  ++AR N+ R  G G +
Sbjct: 1  MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46


>gi|4758222 dual-specificity tyrosine-(Y)-phosphorylation regulated
           kinase 1B isoform a [Homo sapiens]
          Length = 629

 Score = 25.8 bits (55), Expect = 8.4
 Identities = 13/49 (26%), Positives = 20/49 (40%)

Query: 64  KRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNH 112
           +R PGG W      + R++ Q       ++ L  Q     GR   +P H
Sbjct: 348 ERLPGGGWTLRRTKELRKDYQGPGTRRLQEVLGVQTGGPGGRRAGEPGH 396


>gi|38505188 prostaglandin E receptor 3, subtype EP3 isoform 4
          [Homo sapiens]
          Length = 390

 Score = 25.8 bits (55), Expect = 8.4
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAE 92
          M+E    G D  F  R N+        G WA E  ++AR N+ R  G G +
Sbjct: 1  MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46


>gi|38505186 prostaglandin E receptor 3, subtype EP3 isoform 8
          [Homo sapiens]
          Length = 418

 Score = 25.8 bits (55), Expect = 8.4
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAE 92
          M+E    G D  F  R N+        G WA E  ++AR N+ R  G G +
Sbjct: 1  MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46


>gi|38505184 prostaglandin E receptor 3, subtype EP3 isoform 7
          [Homo sapiens]
          Length = 365

 Score = 25.8 bits (55), Expect = 8.4
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAE 92
          M+E    G D  F  R N+        G WA E  ++AR N+ R  G G +
Sbjct: 1  MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46


>gi|38505182 prostaglandin E receptor 3, subtype EP3 isoform 6
          [Homo sapiens]
          Length = 374

 Score = 25.8 bits (55), Expect = 8.4
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAE 92
          M+E    G D  F  R N+        G WA E  ++AR N+ R  G G +
Sbjct: 1  MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46


>gi|38505178 prostaglandin E receptor 3, subtype EP3 isoform 4
          [Homo sapiens]
          Length = 390

 Score = 25.8 bits (55), Expect = 8.4
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAE 92
          M+E    G D  F  R N+        G WA E  ++AR N+ R  G G +
Sbjct: 1  MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46


>gi|38505176 prostaglandin E receptor 3, subtype EP3 isoform 3
          [Homo sapiens]
          Length = 393

 Score = 25.8 bits (55), Expect = 8.4
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAE 92
          M+E    G D  F  R N+        G WA E  ++AR N+ R  G G +
Sbjct: 1  MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46


>gi|38505172 prostaglandin E receptor 3, subtype EP3 isoform 1
          [Homo sapiens]
          Length = 425

 Score = 25.8 bits (55), Expect = 8.4
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAE 92
          M+E    G D  F  R N+        G WA E  ++AR N+ R  G G +
Sbjct: 1  MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46


>gi|186659506 prostaglandin E receptor 3, subtype EP3 isoform 4
          [Homo sapiens]
          Length = 390

 Score = 25.8 bits (55), Expect = 8.4
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAE 92
          M+E    G D  F  R N+        G WA E  ++AR N+ R  G G +
Sbjct: 1  MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46


>gi|160707881 formin 2 [Homo sapiens]
          Length = 1722

 Score = 25.8 bits (55), Expect = 8.4
 Identities = 17/55 (30%), Positives = 23/55 (41%)

Query: 61  DAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRP 115
           DA +  PG  WA EV  DA + +       A+   A  AA+  G        F+P
Sbjct: 356 DAPRGSPGEEWAPEVGEDAPQRLGEEPEEEAQGPDAPAAASLPGSPAPSQRCFKP 410


>gi|42740899 CTAGE family, member 5 isoform 3 [Homo sapiens]
          Length = 761

 Score = 25.8 bits (55), Expect = 8.4
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 12/46 (26%)

Query: 7  LVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDK 52
          LV C+ V+G  +  FF            +WR++  +R   Y+G +K
Sbjct: 43 LVICAAVVGFFAVLFF------------LWRSFRSVRSRLYVGREK 76


>gi|42740897 CTAGE family, member 5 isoform 1 [Homo sapiens]
          Length = 804

 Score = 25.8 bits (55), Expect = 8.4
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 12/46 (26%)

Query: 7  LVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDK 52
          LV C+ V+G  +  FF            +WR++  +R   Y+G +K
Sbjct: 43 LVICAAVVGFFAVLFF------------LWRSFRSVRSRLYVGREK 76


>gi|42740901 CTAGE family, member 5 isoform 4 [Homo sapiens]
          Length = 775

 Score = 25.8 bits (55), Expect = 8.4
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 12/46 (26%)

Query: 7  LVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDK 52
          LV C+ V+G  +  FF            +WR++  +R   Y+G +K
Sbjct: 14 LVICAAVVGFFAVLFF------------LWRSFRSVRSRLYVGREK 47


>gi|42740905 CTAGE family, member 5 isoform 2 [Homo sapiens]
          Length = 792

 Score = 25.8 bits (55), Expect = 8.4
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 12/46 (26%)

Query: 7  LVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDK 52
          LV C+ V+G  +  FF            +WR++  +R   Y+G +K
Sbjct: 31 LVICAAVVGFFAVLFF------------LWRSFRSVRSRLYVGREK 64


>gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens]
          Length = 1185

 Score = 25.8 bits (55), Expect = 8.4
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 7/51 (13%)

Query: 50  SDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAA 100
           S +  H RG+  AA  G GG  ++ ++  AR ++Q        DSL D AA
Sbjct: 27  SPQAHHPRGSPGAAGGGAGGVGSSCLVLGARPHLQ-------PDSLLDCAA 70


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,914,528
Number of Sequences: 37866
Number of extensions: 193023
Number of successful extensions: 366
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 29
length of query: 122
length of database: 18,247,518
effective HSP length: 89
effective length of query: 33
effective length of database: 14,877,444
effective search space: 490955652
effective search space used: 490955652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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