BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|40316910 serum amyloid A1 preproprotein [Homo sapiens] (122 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|40316912 serum amyloid A1 preproprotein [Homo sapiens] 256 2e-69 gi|40316910 serum amyloid A1 preproprotein [Homo sapiens] 256 2e-69 gi|188497671 serum amyloid A2 isoform a [Homo sapiens] 241 1e-64 gi|188497687 serum amyloid A2 isoform b [Homo sapiens] 158 8e-40 gi|10835095 serum amyloid A4, constitutive [Homo sapiens] 141 1e-34 gi|153267448 enolase 3 [Homo sapiens] 28 1.7 gi|153267427 enolase 3 [Homo sapiens] 28 1.7 gi|4505219 matrix metalloproteinase 7 preproprotein [Homo sapiens] 27 4.9 gi|20127454 5-aminoimidazole-4-carboxamide ribonucleotide formyl... 27 4.9 gi|238859593 UDP-glucose ceramide glucosyltransferase-like 2 [Ho... 26 6.5 gi|105990532 apolipoprotein B precursor [Homo sapiens] 26 6.5 gi|9910280 UDP-glucose ceramide glucosyltransferase-like 1 [Homo... 26 8.4 gi|89276764 prostaglandin E receptor 3, subtype EP3 isoform 2 [H... 26 8.4 gi|38505180 prostaglandin E receptor 3, subtype EP3 isoform 5 [H... 26 8.4 gi|4758222 dual-specificity tyrosine-(Y)-phosphorylation regulat... 26 8.4 gi|38505188 prostaglandin E receptor 3, subtype EP3 isoform 4 [H... 26 8.4 gi|38505186 prostaglandin E receptor 3, subtype EP3 isoform 8 [H... 26 8.4 gi|38505184 prostaglandin E receptor 3, subtype EP3 isoform 7 [H... 26 8.4 gi|38505182 prostaglandin E receptor 3, subtype EP3 isoform 6 [H... 26 8.4 gi|38505178 prostaglandin E receptor 3, subtype EP3 isoform 4 [H... 26 8.4 gi|38505176 prostaglandin E receptor 3, subtype EP3 isoform 3 [H... 26 8.4 gi|38505172 prostaglandin E receptor 3, subtype EP3 isoform 1 [H... 26 8.4 gi|186659506 prostaglandin E receptor 3, subtype EP3 isoform 4 [... 26 8.4 gi|160707881 formin 2 [Homo sapiens] 26 8.4 gi|42740899 CTAGE family, member 5 isoform 3 [Homo sapiens] 26 8.4 gi|42740897 CTAGE family, member 5 isoform 1 [Homo sapiens] 26 8.4 gi|42740901 CTAGE family, member 5 isoform 4 [Homo sapiens] 26 8.4 gi|42740905 CTAGE family, member 5 isoform 2 [Homo sapiens] 26 8.4 gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens] 26 8.4 >gi|40316912 serum amyloid A1 preproprotein [Homo sapiens] Length = 122 Score = 256 bits (655), Expect = 2e-69 Identities = 122/122 (100%), Positives = 122/122 (100%) Query: 1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY Sbjct: 1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60 Query: 61 DAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPE 120 DAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPE Sbjct: 61 DAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPE 120 Query: 121 KY 122 KY Sbjct: 121 KY 122 >gi|40316910 serum amyloid A1 preproprotein [Homo sapiens] Length = 122 Score = 256 bits (655), Expect = 2e-69 Identities = 122/122 (100%), Positives = 122/122 (100%) Query: 1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY Sbjct: 1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60 Query: 61 DAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPE 120 DAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPE Sbjct: 61 DAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPE 120 Query: 121 KY 122 KY Sbjct: 121 KY 122 >gi|188497671 serum amyloid A2 isoform a [Homo sapiens] Length = 122 Score = 241 bits (615), Expect = 1e-64 Identities = 115/122 (94%), Positives = 118/122 (96%) Query: 1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60 MKLLTGLVFCSLVL VSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY Sbjct: 1 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60 Query: 61 DAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPE 120 DAAKRGPGGAWAAEVIS+ARENIQR G GAEDSLADQAAN+WGRSG+DPNHFRPAGLPE Sbjct: 61 DAAKRGPGGAWAAEVISNARENIQRLTGRGAEDSLADQAANKWGRSGRDPNHFRPAGLPE 120 Query: 121 KY 122 KY Sbjct: 121 KY 122 >gi|188497687 serum amyloid A2 isoform b [Homo sapiens] Length = 83 Score = 158 bits (400), Expect = 8e-40 Identities = 76/77 (98%), Positives = 76/77 (98%) Query: 1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60 MKLLTGLVFCSLVL VSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY Sbjct: 1 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60 Query: 61 DAAKRGPGGAWAAEVIS 77 DAAKRGPGGAWAAEVIS Sbjct: 61 DAAKRGPGGAWAAEVIS 77 >gi|10835095 serum amyloid A4, constitutive [Homo sapiens] Length = 130 Score = 141 bits (355), Expect = 1e-34 Identities = 71/130 (54%), Positives = 94/130 (72%), Gaps = 8/130 (6%) Query: 1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60 M+L TG+VFCSLV+GV+S S+ SF EA G DM RAY D+ +N+ S++Y +ARGNY Sbjct: 1 MRLFTGIVFCSLVMGVTSESWRSFFKEALQGVGDMGRAYWDIMISNHQNSNRYLYARGNY 60 Query: 61 DAAKRGPGGAWAAEVISDARENIQ-----RFFGHGA---EDSLADQAANEWGRSGKDPNH 112 DAA+RGPGG WAA++IS +R +Q FG+ + EDS +++ A EWGRSGKDP+ Sbjct: 61 DAAQRGPGGVWAAKLISRSRVYLQGLIDYYLFGNSSTVLEDSKSNEKAEEWGRSGKDPDR 120 Query: 113 FRPAGLPEKY 122 FRP GLP+KY Sbjct: 121 FRPDGLPKKY 130 >gi|153267448 enolase 3 [Homo sapiens] Length = 434 Score = 28.1 bits (61), Expect = 1.7 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 12/95 (12%) Query: 40 SDMREANYIGSDKYFHARG------NYDAAKRGPGGAWAAEVI--SDARENIQRFF-GHG 90 S +EA IG++ Y H +G DA G G +A ++ ++A E ++ G Sbjct: 176 SSFKEAMRIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAG 235 Query: 91 AEDSLA---DQAANEWGRSGKDPNHFRPAGLPEKY 122 D + D AA+E+ R+GK F+ P ++ Sbjct: 236 YPDKVVIGMDVAASEFYRNGKYDLDFKSPDDPARH 270 >gi|153267427 enolase 3 [Homo sapiens] Length = 434 Score = 28.1 bits (61), Expect = 1.7 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 12/95 (12%) Query: 40 SDMREANYIGSDKYFHARG------NYDAAKRGPGGAWAAEVI--SDARENIQRFF-GHG 90 S +EA IG++ Y H +G DA G G +A ++ ++A E ++ G Sbjct: 176 SSFKEAMRIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAG 235 Query: 91 AEDSLA---DQAANEWGRSGKDPNHFRPAGLPEKY 122 D + D AA+E+ R+GK F+ P ++ Sbjct: 236 YPDKVVIGMDVAASEFYRNGKYDLDFKSPDDPARH 270 >gi|4505219 matrix metalloproteinase 7 preproprotein [Homo sapiens] Length = 267 Score = 26.6 bits (57), Expect = 4.9 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 71 WAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFR 114 W ++V++ + R H D L +A N WG+ + P HFR Sbjct: 104 WTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGK--EIPLHFR 145 >gi|20127454 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase [Homo sapiens] Length = 592 Score = 26.6 bits (57), Expect = 4.9 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 7/49 (14%) Query: 48 IGSDKYFHARGNYDAAKR-------GPGGAWAAEVISDARENIQRFFGH 89 I SD +F R N D AKR P G+ A +V+ +A + + H Sbjct: 536 ISSDAFFPFRDNVDRAKRSGVAYIAAPSGSAADKVVIEACDELGIILAH 584 >gi|238859593 UDP-glucose ceramide glucosyltransferase-like 2 [Homo sapiens] Length = 1516 Score = 26.2 bits (56), Expect = 6.5 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 1/47 (2%) Query: 51 DKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLAD 97 D A Y K PG AW + E+I + GH DS AD Sbjct: 1122 DTIVMAHHGYFQLKANPG-AWILRLHQGKSEDIYQIVGHEGTDSQAD 1167 >gi|105990532 apolipoprotein B precursor [Homo sapiens] Length = 4563 Score = 26.2 bits (56), Expect = 6.5 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Query: 2 KLLTGLVFCSLVLGVSSRSFFSF--LGEAFDGARDMWRAYSDMR 43 +L G + +++LGV S++ F+F E + DM +Y++M+ Sbjct: 1707 ELSLGSAYQAMILGVDSKNIFNFKVSQEGLKLSNDMMGSYAEMK 1750 >gi|9910280 UDP-glucose ceramide glucosyltransferase-like 1 [Homo sapiens] Length = 1555 Score = 25.8 bits (55), Expect = 8.4 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 45 ANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLAD 97 AN + D A Y K PG AW + E+I R + H DS D Sbjct: 1138 ANPVIVDTIVMANLGYFQLKANPG-AWILRLRKGRSEDIYRIYSHDGTDSPPD 1189 >gi|89276764 prostaglandin E receptor 3, subtype EP3 isoform 2 [Homo sapiens] Length = 402 Score = 25.8 bits (55), Expect = 8.4 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAE 92 M+E G D F R N+ G WA E ++AR N+ R G G + Sbjct: 1 MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46 >gi|38505180 prostaglandin E receptor 3, subtype EP3 isoform 5 [Homo sapiens] Length = 388 Score = 25.8 bits (55), Expect = 8.4 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAE 92 M+E G D F R N+ G WA E ++AR N+ R G G + Sbjct: 1 MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46 >gi|4758222 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B isoform a [Homo sapiens] Length = 629 Score = 25.8 bits (55), Expect = 8.4 Identities = 13/49 (26%), Positives = 20/49 (40%) Query: 64 KRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNH 112 +R PGG W + R++ Q ++ L Q GR +P H Sbjct: 348 ERLPGGGWTLRRTKELRKDYQGPGTRRLQEVLGVQTGGPGGRRAGEPGH 396 >gi|38505188 prostaglandin E receptor 3, subtype EP3 isoform 4 [Homo sapiens] Length = 390 Score = 25.8 bits (55), Expect = 8.4 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAE 92 M+E G D F R N+ G WA E ++AR N+ R G G + Sbjct: 1 MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46 >gi|38505186 prostaglandin E receptor 3, subtype EP3 isoform 8 [Homo sapiens] Length = 418 Score = 25.8 bits (55), Expect = 8.4 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAE 92 M+E G D F R N+ G WA E ++AR N+ R G G + Sbjct: 1 MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46 >gi|38505184 prostaglandin E receptor 3, subtype EP3 isoform 7 [Homo sapiens] Length = 365 Score = 25.8 bits (55), Expect = 8.4 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAE 92 M+E G D F R N+ G WA E ++AR N+ R G G + Sbjct: 1 MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46 >gi|38505182 prostaglandin E receptor 3, subtype EP3 isoform 6 [Homo sapiens] Length = 374 Score = 25.8 bits (55), Expect = 8.4 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAE 92 M+E G D F R N+ G WA E ++AR N+ R G G + Sbjct: 1 MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46 >gi|38505178 prostaglandin E receptor 3, subtype EP3 isoform 4 [Homo sapiens] Length = 390 Score = 25.8 bits (55), Expect = 8.4 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAE 92 M+E G D F R N+ G WA E ++AR N+ R G G + Sbjct: 1 MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46 >gi|38505176 prostaglandin E receptor 3, subtype EP3 isoform 3 [Homo sapiens] Length = 393 Score = 25.8 bits (55), Expect = 8.4 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAE 92 M+E G D F R N+ G WA E ++AR N+ R G G + Sbjct: 1 MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46 >gi|38505172 prostaglandin E receptor 3, subtype EP3 isoform 1 [Homo sapiens] Length = 425 Score = 25.8 bits (55), Expect = 8.4 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAE 92 M+E G D F R N+ G WA E ++AR N+ R G G + Sbjct: 1 MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46 >gi|186659506 prostaglandin E receptor 3, subtype EP3 isoform 4 [Homo sapiens] Length = 390 Score = 25.8 bits (55), Expect = 8.4 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAE 92 M+E G D F R N+ G WA E ++AR N+ R G G + Sbjct: 1 MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46 >gi|160707881 formin 2 [Homo sapiens] Length = 1722 Score = 25.8 bits (55), Expect = 8.4 Identities = 17/55 (30%), Positives = 23/55 (41%) Query: 61 DAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRP 115 DA + PG WA EV DA + + A+ A AA+ G F+P Sbjct: 356 DAPRGSPGEEWAPEVGEDAPQRLGEEPEEEAQGPDAPAAASLPGSPAPSQRCFKP 410 >gi|42740899 CTAGE family, member 5 isoform 3 [Homo sapiens] Length = 761 Score = 25.8 bits (55), Expect = 8.4 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 12/46 (26%) Query: 7 LVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDK 52 LV C+ V+G + FF +WR++ +R Y+G +K Sbjct: 43 LVICAAVVGFFAVLFF------------LWRSFRSVRSRLYVGREK 76 >gi|42740897 CTAGE family, member 5 isoform 1 [Homo sapiens] Length = 804 Score = 25.8 bits (55), Expect = 8.4 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 12/46 (26%) Query: 7 LVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDK 52 LV C+ V+G + FF +WR++ +R Y+G +K Sbjct: 43 LVICAAVVGFFAVLFF------------LWRSFRSVRSRLYVGREK 76 >gi|42740901 CTAGE family, member 5 isoform 4 [Homo sapiens] Length = 775 Score = 25.8 bits (55), Expect = 8.4 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 12/46 (26%) Query: 7 LVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDK 52 LV C+ V+G + FF +WR++ +R Y+G +K Sbjct: 14 LVICAAVVGFFAVLFF------------LWRSFRSVRSRLYVGREK 47 >gi|42740905 CTAGE family, member 5 isoform 2 [Homo sapiens] Length = 792 Score = 25.8 bits (55), Expect = 8.4 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 12/46 (26%) Query: 7 LVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDK 52 LV C+ V+G + FF +WR++ +R Y+G +K Sbjct: 31 LVICAAVVGFFAVLFF------------LWRSFRSVRSRLYVGREK 64 >gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens] Length = 1185 Score = 25.8 bits (55), Expect = 8.4 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 7/51 (13%) Query: 50 SDKYFHARGNYDAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAA 100 S + H RG+ AA G GG ++ ++ AR ++Q DSL D AA Sbjct: 27 SPQAHHPRGSPGAAGGGAGGVGSSCLVLGARPHLQ-------PDSLLDCAA 70 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.320 0.136 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,914,528 Number of Sequences: 37866 Number of extensions: 193023 Number of successful extensions: 366 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 22 Number of HSP's that attempted gapping in prelim test: 358 Number of HSP's gapped (non-prelim): 29 length of query: 122 length of database: 18,247,518 effective HSP length: 89 effective length of query: 33 effective length of database: 14,877,444 effective search space: 490955652 effective search space used: 490955652 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.