Guide to the Human Genome
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Name: ATIC Sequence: fasta or formatted (592aa) NCBI GI: 20127454
Description:

5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase

Referenced in:

Purine Biosynthesis and Catabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         66           3
 C cysteine            1.5          9           1
 D aspartate           5.6         33           1
 E glutamate           6.2         37           3
 F phenylalanine       3.2         19           2
 G glycine             6.4         38           2
 H histidine           2.2         13           2
 I isoleucine          5.1         30           2
 K lysine              6.2         37           3
 L leucine             9.6         57           2
 M methionine          1.7         10           1
 N asparagine          4.1         24           2
 P proline             4.2         25           1
 Q glutamine           3.4         20           2
 R arginine            4.7         28           2
 S serine              6.6         39           2
 T threonine           5.4         32           1
 V valine              8.8         52           3
 W tryptophan          0.8          5           2
 Y tyrosine            3.0         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   5-aminoimidazole-4-carboxamide ribonucleotide formyl... 
CDH24                 0.008   cadherin-like 24 isoform 1 
CAMK2G                0.004   calcium/calmodulin-dependent protein kinase II gamma...
NASP                  0.004   nuclear autoantigenic sperm protein isoform 2 
NASP                  0.004   nuclear autoantigenic sperm protein isoform 1 
NASP                  0.004   nuclear autoantigenic sperm protein isoform 3 
SPG20                 0.004   spartin 
SPG20                 0.004   spartin 
SPG20                 0.004   spartin 
SPG20                 0.004   spartin 
LRCH1                 0.004   leucine-rich repeats and calponin homology (CH) doma...
ANKRD33B              0.004   PREDICTED: ankyrin repeat domain 33B 
ANKRD33B              0.004   PREDICTED: ankyrin repeat domain 33B 
ANKRD33B              0.004   PREDICTED: ankyrin repeat domain 33B 
OPCML                 0.004   opioid binding protein/cell adhesion molecule-like i...
OPCML                 0.004   opioid binding protein/cell adhesion molecule-like is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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