Search of human proteins with 39753970

Search of human proteins with 39753970

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|39753970 cathelicidin antimicrobial peptide [Homo sapiens]
         (170 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|39753970 cathelicidin antimicrobial peptide [Homo sapiens]         343   5e-95
gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo sap...    32   0.34 
gi|5902118 secreted phosphoprotein 2, 24kDa precursor [Homo sapi...    30   0.77 
gi|4504893 kininogen 1 isoform 2 [Homo sapiens]                        30   1.3  
gi|156231037 kininogen 1 isoform 1 [Homo sapiens]                      30   1.3  
gi|4758410 fragile X mental retardation syndrome related protein...    30   1.3  
gi|189181724 proteoglycan 4 isoform D [Homo sapiens]                   28   3.8  
gi|189181722 proteoglycan 4 isoform C [Homo sapiens]                   28   3.8  
gi|189181720 proteoglycan 4 isoform B [Homo sapiens]                   28   3.8  
gi|67190163 proteoglycan 4 isoform A [Homo sapiens]                    28   3.8  
gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo s...    27   6.5  
gi|121114287 apoptosis-stimulating protein of p53, 1 [Homo sapiens]    27   6.5  
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa...    27   6.5  
gi|149158714 Atg13-interacting protein [Homo sapiens]                  27   8.5  
gi|31542675 Atg13-interacting protein [Homo sapiens]                   27   8.5  

>gi|39753970 cathelicidin antimicrobial peptide [Homo sapiens]
          Length = 170

 Score =  343 bits (879), Expect = 5e-95
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MKTQRDGHSLGRWSLVLLLLGLVMPLAIIAQVLSYKEAVLRAIDGINQRSSDANLYRLLD 60
           MKTQRDGHSLGRWSLVLLLLGLVMPLAIIAQVLSYKEAVLRAIDGINQRSSDANLYRLLD
Sbjct: 1   MKTQRDGHSLGRWSLVLLLLGLVMPLAIIAQVLSYKEAVLRAIDGINQRSSDANLYRLLD 60

Query: 61  LDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVKRCMGTVTLNQARGS 120
           LDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVKRCMGTVTLNQARGS
Sbjct: 61  LDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVKRCMGTVTLNQARGS 120

Query: 121 FDISCDKDNKRFALLGDFFRKSKEKIGKEFKRIVQRIKDFLRNLVPRTES 170
           FDISCDKDNKRFALLGDFFRKSKEKIGKEFKRIVQRIKDFLRNLVPRTES
Sbjct: 121 FDISCDKDNKRFALLGDFFRKSKEKIGKEFKRIVQRIKDFLRNLVPRTES 170


>gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo
           sapiens]
          Length = 1086

 Score = 31.6 bits (70), Expect = 0.34
 Identities = 16/36 (44%), Positives = 19/36 (52%)

Query: 71  PDTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVK 106
           P  P+P  FT K T  P +  Q P   DFK+ GL K
Sbjct: 582 PRPPQPAFFTQKPTYDPVSEDQDPLSSDFKRLGLRK 617


>gi|5902118 secreted phosphoprotein 2, 24kDa precursor [Homo
           sapiens]
          Length = 211

 Score = 30.4 bits (67), Expect = 0.77
 Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 34  SYKEAVLRAIDGINQRSSDANLYRLLDLD-PRPTMDGDPDTPKPVSFTVKETVCPRTTQQ 92
           S ++A+  ++  +N +S    L+R       R  +  + +    + F+++ET C + + +
Sbjct: 39  SLRDALSASVVKVNSQSLSPYLFRAFRSSLKRVEVLDENNLVMNLEFSIRETTCRKDSGE 98

Query: 93  SPEDCDFKKDGLVKR--CMGTVTLN 115
            P  C F++D  V    C  TV ++
Sbjct: 99  DPATCAFQRDYYVSTAVCRSTVKVS 123


>gi|4504893 kininogen 1 isoform 2 [Homo sapiens]
          Length = 427

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 37  EAVLRAIDGINQRSSDANLYRLLDLDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPED 96
           +A L+  +  NQ ++   LYR+ +     T     DT     + +KE  CP  + ++ +D
Sbjct: 38  DAALKKYNSQNQSNNQFVLYRITEA----TKTVGSDTFYSFKYEIKEGDCPVQSGKTWQD 93

Query: 97  CDFK 100
           C++K
Sbjct: 94  CEYK 97


>gi|156231037 kininogen 1 isoform 1 [Homo sapiens]
          Length = 644

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 37  EAVLRAIDGINQRSSDANLYRLLDLDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPED 96
           +A L+  +  NQ ++   LYR+ +     T     DT     + +KE  CP  + ++ +D
Sbjct: 38  DAALKKYNSQNQSNNQFVLYRITEA----TKTVGSDTFYSFKYEIKEGDCPVQSGKTWQD 93

Query: 97  CDFK 100
           C++K
Sbjct: 94  CEYK 97


>gi|4758410 fragile X mental retardation syndrome related protein 2
           [Homo sapiens]
          Length = 673

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 49  RSSDANLYRLLDL-DPRPTMDGDPDTPKPVSFTVKETVCPRTTQ-QSPEDCDFKKDG 103
           +  D+N Y LLD  +P P +D +P  P P S   + +   RT + ++  D   + DG
Sbjct: 512 KDPDSNPYSLLDTSEPEPPVDSEPGEPPPASARRRRSRRRRTDEDRTVMDGGLESDG 568


>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
          Length = 1270

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 47  NQRSSDANLYRLLDLDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVK 106
           N+ S+   +     ++PRP++  + DT K  S TV +     T + +  +     DG  K
Sbjct: 110 NKVSTSPKITTAKPINPRPSLPPNSDTSKETSLTVNKETTVETKETTTTNKQTSTDGKEK 169


>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
          Length = 1311

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 47  NQRSSDANLYRLLDLDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVK 106
           N+ S+   +     ++PRP++  + DT K  S TV +     T + +  +     DG  K
Sbjct: 151 NKVSTSPKITTAKPINPRPSLPPNSDTSKETSLTVNKETTVETKETTTTNKQTSTDGKEK 210


>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
          Length = 1363

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 47  NQRSSDANLYRLLDLDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVK 106
           N+ S+   +     ++PRP++  + DT K  S TV +     T + +  +     DG  K
Sbjct: 203 NKVSTSPKITTAKPINPRPSLPPNSDTSKETSLTVNKETTVETKETTTTNKQTSTDGKEK 262


>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
          Length = 1404

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 47  NQRSSDANLYRLLDLDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVK 106
           N+ S+   +     ++PRP++  + DT K  S TV +     T + +  +     DG  K
Sbjct: 244 NKVSTSPKITTAKPINPRPSLPPNSDTSKETSLTVNKETTVETKETTTTNKQTSTDGKEK 303


>gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo
           sapiens]
          Length = 500

 Score = 27.3 bits (59), Expect = 6.5
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 14/87 (16%)

Query: 72  DTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVKRCMGTVTLNQARGSFDISCDKDNKR 131
           D  +PV    +E+   +T   +P D  F+              +   G+FDI  D+  +R
Sbjct: 100 DDQRPVCLVCRESQEHQTHAMAPIDEAFE--------------SYRTGNFDIHVDEWKRR 145

Query: 132 FALLGDFFRKSKEKIGKEFKRIVQRIK 158
              L  +  K +EK+ K  + +V ++K
Sbjct: 146 LIRLLLYHSKQEEKLLKSQRNLVAKMK 172


>gi|121114287 apoptosis-stimulating protein of p53, 1 [Homo sapiens]
          Length = 1090

 Score = 27.3 bits (59), Expect = 6.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 59  LDLDPRPTMDG-DPDTPKPVSFTVKETVCPRTTQQSPEDCD 98
           L  +P P+ D  D + P P     +E +CP+TT Q+ E  +
Sbjct: 781 LPAEPAPSSDANDNELPSPEP---EELICPQTTHQTAEPAE 818


>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
            sapiens]
          Length = 2881

 Score = 27.3 bits (59), Expect = 6.5
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 10/69 (14%)

Query: 48   QRSSDANLY------RLLDLDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPE---DCD 98
            +RS DAN        +LLD     T   DP  P P    VKE    ++TQ S E      
Sbjct: 2284 RRSYDANTVASFYTTKLLDSPGAATEYSDPSVPTPPGAGVKEE-HDQSTQMSKEGGLKLT 2342

Query: 99   FKKDGLVKR 107
            F+K GL ++
Sbjct: 2343 FQKQGLAQK 2351


>gi|149158714 Atg13-interacting protein [Homo sapiens]
          Length = 218

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 14/65 (21%)

Query: 99  FKKDGLVKRCMGTVTLNQARGSFDISCDKDNKRFALLGDFFRKSKEKIGKEFKRIVQRIK 158
           +KK+G     +GTV      G+ D+ CD  +  +       R S E++ +  +++V   K
Sbjct: 39  YKKEGTYS--IGTV------GTQDVDCDFIDFTYV------RVSSEELDRALRKVVGEFK 84

Query: 159 DFLRN 163
           D LRN
Sbjct: 85  DALRN 89


>gi|31542675 Atg13-interacting protein [Homo sapiens]
          Length = 218

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 14/65 (21%)

Query: 99  FKKDGLVKRCMGTVTLNQARGSFDISCDKDNKRFALLGDFFRKSKEKIGKEFKRIVQRIK 158
           +KK+G     +GTV      G+ D+ CD  +  +       R S E++ +  +++V   K
Sbjct: 39  YKKEGTYS--IGTV------GTQDVDCDFIDFTYV------RVSSEELDRALRKVVGEFK 84

Query: 159 DFLRN 163
           D LRN
Sbjct: 85  DALRN 89


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,405,655
Number of Sequences: 37866
Number of extensions: 288387
Number of successful extensions: 759
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 740
Number of HSP's gapped (non-prelim): 27
length of query: 170
length of database: 18,247,518
effective HSP length: 95
effective length of query: 75
effective length of database: 14,650,248
effective search space: 1098768600
effective search space used: 1098768600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.