Guide to the Human Genome
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Name: C12orf44 Sequence: fasta or formatted (218aa) NCBI GI: 149158714
Description:

Atg13-interacting protein

Referenced in:

Additional Membrane Functions

Other entries for this name:
alt mRNA [218aa] Atg13-interacting protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7          8           1
 C cysteine            2.3          5           1
 D aspartate           6.0         13           1
 E glutamate           9.2         20           2
 F phenylalanine       3.7          8           1
 G glycine             6.0         13           2
 H histidine           2.3          5           1
 I isoleucine          4.6         10           2
 K lysine              6.9         15           3
 L leucine             8.7         19           2
 M methionine          2.8          6           1
 N asparagine          2.3          5           1
 P proline             2.3          5           1
 Q glutamine           4.1          9           1
 R arginine            6.4         14           2
 S serine              6.0         13           2
 T threonine           7.3         16           3
 V valine             11.0         24           2
 W tryptophan          1.4          3           1
 Y tyrosine            3.2          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Atg13-interacting protein 
C12orf44              1.000   Atg13-interacting protein 
SLC28A2               0.012   solute carrier family 28 (sodium-coupled nucleoside...
SPATA1                0.012   spermatogenesis associated 1 
LOC644231             0.012   PREDICTED: similar to WHDC1-like protein 1 
LOC644231             0.012   PREDICTED: similar to WAS protein homolog associate...
CDC5L                 0.012   CDC5-like 
MAT2A                 0.010   methionine adenosyltransferase II, alpha 
WHAMM                 0.010   WAS protein homolog associated with actin, golgi me...
HLCS                  0.007   holocarboxylase synthetase 
POLA1                 0.007   DNA-directed DNA polymerase alpha 1 
NEK10                 0.007   NIMA-related kinase 10 isoform 3 
LOC644231             0.007   PREDICTED: similar to WAS protein homolog associate...
LOC642397             0.007   PREDICTED: similar to WAS protein homolog associate...
LRRC7                 0.007   leucine rich repeat containing 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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