Search of human proteins with 39725636

Search of human proteins with 39725636

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|39725636 transmembrane emp24 protein transport domain
containing 9 [Homo sapiens]
         (235 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|39725636 transmembrane emp24 protein transport domain contain...   474   e-134
gi|33457308 transmembrane emp24 protein transport domain contain...   357   4e-99
gi|98986464 transmembrane emp24 domain-containing protein 10 pre...   108   4e-24
gi|5803149 coated vesicle membrane protein [Homo sapiens]              84   1e-16
gi|32996709 transmembrane emp24 protein transport domain contain...    79   4e-15
gi|6679189 transmembrane emp24 domain containing 3 [Homo sapiens]      70   2e-12
gi|19923442 transmembrane emp24 protein transport domain contain...    47   2e-05
gi|5803040 interleukin 1 receptor-like 1 ligand precursor [Homo ...    47   2e-05
gi|21389573 transmembrane emp24 protein transport domain contain...    44   1e-04
gi|17402909 tripartite motif protein TRIM29 [Homo sapiens]             32   0.36 
gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens]         32   0.36 
gi|27436951 lamin B2 [Homo sapiens]                                    30   1.8  
gi|150010604 kinesin family member 4B [Homo sapiens]                   30   2.3  
gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b...    30   2.3  
gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a...    30   2.3  
gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b...    30   2.3  
gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a...    30   2.3  
gi|51972208 leucine, glutamate and lysine rich 1 [Homo sapiens]        30   2.3  
gi|190684694 ubiquitin specific peptidase 8 [Homo sapiens]             30   2.3  
gi|190684692 ubiquitin specific peptidase 8 [Homo sapiens]             30   2.3  
gi|190684690 ubiquitin specific peptidase 8 [Homo sapiens]             30   2.3  
gi|116686122 kinesin family member 4 [Homo sapiens]                    30   2.3  
gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Hom...    30   2.3  
gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Ho...    30   2.3  
gi|57242782 MAX interactor 1 isoform a [Homo sapiens]                  29   3.1  
gi|47717116 MAX interactor 1 isoform b [Homo sapiens]                  29   3.1  
gi|57242784 MAX interactor 1 isoform c [Homo sapiens]                  29   3.1  
gi|21735548 centrosomal protein 2 [Homo sapiens]                       29   3.1  
gi|148612870 chromodomain helicase DNA binding protein 1-like [H...    29   3.1  
gi|110349721 titin isoform novex-3 [Homo sapiens]                      29   4.0  

>gi|39725636 transmembrane emp24 protein transport domain containing
           9 [Homo sapiens]
          Length = 235

 Score =  474 bits (1220), Expect = e-134
 Identities = 235/235 (100%), Positives = 235/235 (100%)

Query: 1   MAVELGVLLVRPRPGTGLGRVMRTLLLVLWLATRGSALYFHIGETEKKCFIEEIPDETMV 60
           MAVELGVLLVRPRPGTGLGRVMRTLLLVLWLATRGSALYFHIGETEKKCFIEEIPDETMV
Sbjct: 1   MAVELGVLLVRPRPGTGLGRVMRTLLLVLWLATRGSALYFHIGETEKKCFIEEIPDETMV 60

Query: 61  IGNYRTQLYDKQREEYQPATPGLGMFVEVKDPEDKVILARQYGSEGRFTFTSHTPGEHQI 120
           IGNYRTQLYDKQREEYQPATPGLGMFVEVKDPEDKVILARQYGSEGRFTFTSHTPGEHQI
Sbjct: 61  IGNYRTQLYDKQREEYQPATPGLGMFVEVKDPEDKVILARQYGSEGRFTFTSHTPGEHQI 120

Query: 121 CLHSNSTKFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQK 180
           CLHSNSTKFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQK
Sbjct: 121 CLHSNSTKFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQK 180

Query: 181 EQNYQRWREERFRQTSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV 235
           EQNYQRWREERFRQTSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV
Sbjct: 181 EQNYQRWREERFRQTSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV 235


>gi|33457308 transmembrane emp24 protein transport domain containing
           4 [Homo sapiens]
          Length = 227

 Score =  357 bits (917), Expect = 4e-99
 Identities = 174/223 (78%), Positives = 197/223 (88%), Gaps = 2/223 (0%)

Query: 15  GTGLGRVM--RTLLLVLWLATRGSALYFHIGETEKKCFIEEIPDETMVIGNYRTQLYDKQ 72
           G G  R M  + LLL+   AT    LYFHIGETEK+CFIEEIPDETMVIGNYRTQ++DKQ
Sbjct: 5   GAGPLRAMGRQALLLLALCATGAQGLYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQ 64

Query: 73  REEYQPATPGLGMFVEVKDPEDKVILARQYGSEGRFTFTSHTPGEHQICLHSNSTKFSLF 132
           +E + P+TPGLGM VEVKDP+ KV+L+RQYGSEGRFTFTSHTPG+HQICLHSNST+ +LF
Sbjct: 65  KEVFLPSTPGLGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMALF 124

Query: 133 AGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERF 192
           AGG LRVHLDIQVGEHAN+Y EIAAKDKL+ELQLR RQL++QVEQIQKEQ+YQR+REERF
Sbjct: 125 AGGKLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERF 184

Query: 193 RQTSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV 235
           R TSESTNQRVLWWSI QT+IL+  G+WQMRHLKSFFEAKKLV
Sbjct: 185 RLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV 227


>gi|98986464 transmembrane emp24 domain-containing protein 10
           precursor [Homo sapiens]
          Length = 219

 Score =  108 bits (270), Expect = 4e-24
 Identities = 68/215 (31%), Positives = 111/215 (51%), Gaps = 18/215 (8%)

Query: 25  LLLVLWLATR-GSALYFHIGETEKKCFIEEIPDETMVIGNYRTQLYDKQREEYQPATPGL 83
           LLL+  L  R   A+ FH+    +KC  EEI  + +V G Y          +      GL
Sbjct: 18  LLLLFLLGPRLVLAISFHLPINSRKCLREEIHKDLLVTGAYEIS-------DQSGGAGGL 70

Query: 84  GMFVEVKDPEDKVILARQYGSEGRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLR---VH 140
              +++ D    ++ +++  ++G+F FT+      ++C  S  T       G +    V 
Sbjct: 71  RSHLKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGT-------GRIPDQLVI 123

Query: 141 LDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTN 200
           LD++ G  A +Y EIA  +KL  L++ +R+L +  E I  +  Y + REE  R T+ESTN
Sbjct: 124 LDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTN 183

Query: 201 QRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV 235
            RVL++SI     L+ +  WQ+ +L+ FF+AKKL+
Sbjct: 184 TRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218


>gi|5803149 coated vesicle membrane protein [Homo sapiens]
          Length = 201

 Score = 83.6 bits (205), Expect = 1e-16
 Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 19/212 (8%)

Query: 25  LLLVLWLATRGSALYFHIGETEKKCFIEEIPDETMVIGNYRTQLYDKQREEYQPATPG-L 83
           L+L+  L    S  +  I    ++CF E +   T            K    ++ A  G L
Sbjct: 8   LVLLAALLATVSGYFVSIDAHAEECFFERVTSGT------------KMGLIFEVAEGGFL 55

Query: 84  GMFVEVKDPEDKVILARQYGSEGRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVHLDI 143
            + VE+  P++K I      S G++TF +H  G ++ C    S + S     ++   +DI
Sbjct: 56  DIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCF---SNRMSTMTPKIVMFTIDI 112

Query: 144 QVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRV 203
                  D    A ++KL E+   + +L   +  ++ EQ Y   RE   R  +++TN RV
Sbjct: 113 GEAPKGQDMETEAHQNKLEEM---INELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRV 169

Query: 204 LWWSILQTLILVAIGVWQMRHLKSFFEAKKLV 235
           + WS  + L+LVA+ + Q+ +LK FFE +++V
Sbjct: 170 VLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 201


>gi|32996709 transmembrane emp24 protein transport domain containing
           7 [Homo sapiens]
          Length = 224

 Score = 78.6 bits (192), Expect = 4e-15
 Identities = 67/232 (28%), Positives = 106/232 (45%), Gaps = 27/232 (11%)

Query: 12  PRPGTG------LGRV-MRTLLLVLWLATRGSA--LYFHIGETEKKCFIEEIPDETMVIG 62
           PRPG+        GR   R L L+L +   G A  + F + +  K+CF E+I   T    
Sbjct: 2   PRPGSAQRWAAVAGRWGCRLLALLLLVPGPGGASEITFELPDNAKQCFYEDIAQGT---- 57

Query: 63  NYRTQLYDKQREEYQPATPG-LGMFVEVKDPEDKVILARQYGSEGRFTFTSHTPGEHQIC 121
                   K   E+Q  T G   +   ++DP+ KV+          FTFT+   G ++ C
Sbjct: 58  --------KCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFC 109

Query: 122 LHSNSTKFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKE 181
               S +FS F      V+ D QVGE    +        L++++     + E ++ +   
Sbjct: 110 F---SNEFSTFTHKT--VYFDFQVGEDPPLFPSENRVSALTQMESACVSIHEALKSVIDY 164

Query: 182 QNYQRWREERFRQTSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKK 233
           Q + R RE + R  +E  N RV +WS+ + LIL+ + + Q+  LKSFF  K+
Sbjct: 165 QTHFRLREAQGRSRAEDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKR 216


>gi|6679189 transmembrane emp24 domain containing 3 [Homo sapiens]
          Length = 217

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 23/225 (10%)

Query: 15  GTGLGRVMRTLLLVLWLATR----GSALYFHIGETEKKCFIEEIPDETMVIGNYRTQLYD 70
           G+ + R    LLL+L L       G+ L F + +  K+CF EE+                
Sbjct: 2   GSTVPRSASVLLLLLLLRRAEQPCGAELTFELPDNAKQCFHEEVEQGV------------ 49

Query: 71  KQREEYQPATPG-LGMFVEVKDPEDKVILARQYGSEGRFTFTSHTPGEHQICLHSNSTKF 129
           K   +YQ  T G   +   V+DP+   I          FT+ +   G +Q C    S +F
Sbjct: 50  KFSLDYQVITGGHYDVDCYVEDPQGNTIYRETKKQYDSFTYRAEVKGVYQFCF---SNEF 106

Query: 130 SLFAGGMLRVHLDIQVGEHANDYAEIAAK-DKLSELQLRVRQLVEQVEQIQKEQNYQRWR 188
           S F+     V+ D QVG+      ++  +   L++++     + E ++ +   Q + R R
Sbjct: 107 STFSHKT--VYFDFQVGDEPPILPDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRLR 164

Query: 189 EERFRQTSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKK 233
           E + R  +E  N RV +WS+ +T+ L  +   Q+  LKSFF  K+
Sbjct: 165 EAQDRARAEDLNSRVSYWSVGETIALFVVSFSQVLLLKSFFTEKR 209


>gi|19923442 transmembrane emp24 protein transport domain containing
           5 [Homo sapiens]
          Length = 229

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 49/206 (23%), Positives = 89/206 (43%), Gaps = 30/206 (14%)

Query: 40  FHIGETEKKCFIEEIPDETMVIGNYRTQLYDKQREEYQPATPGLGMFVEVKDPEDKVILA 99
           F +   +K+CF + +P +  +   Y  Q+ D           GL +   +  PE K ++ 
Sbjct: 38  FTLPAGQKECFYQPMPLKASLEIEY--QVLDGA---------GLDIDFHLASPEGKTLVF 86

Query: 100 RQYGSEGRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVHLDIQ-VGEHANDYAE---- 154
            Q  S+G  T  +   G++  C  +    FS  +  ++   L +  +GE A +  +    
Sbjct: 87  EQRKSDGVHTVETEV-GDYMFCFDNT---FSTISEKVIFFELILDNMGEQAQEQEDWKKY 142

Query: 155 IAAKDKLSELQLRVRQLVEQVEQIQKE-------QNYQRWREERFRQTSESTNQRVLWWS 207
           I   D L    +++  ++E +  I+         Q   R  E R R   ES   RV +WS
Sbjct: 143 ITGTDILD---MKLEDILESINSIKSRLSKSGHIQILLRAFEARDRNIQESNFDRVNFWS 199

Query: 208 ILQTLILVAIGVWQMRHLKSFFEAKK 233
           ++  +++V +   Q+  LKS FE K+
Sbjct: 200 MVNLVVMVVVSAIQVYMLKSLFEDKR 225


>gi|5803040 interleukin 1 receptor-like 1 ligand precursor [Homo
           sapiens]
          Length = 227

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 42/197 (21%), Positives = 86/197 (43%), Gaps = 22/197 (11%)

Query: 47  KKCFIEEIPDETMVIGNYRTQLYDKQREEYQP-ATPGLGMFVEVKDPEDKVILARQYGSE 105
           K+CF +  P    +              EYQ     GL +   ++ P+  ++++    ++
Sbjct: 43  KQCFYQSAPANASL------------ETEYQVIGGAGLDVDFTLESPQGVLLVSESRKAD 90

Query: 106 GRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQ 165
           G  T      G++++C  ++ +  S        +   +Q  E    +AE    +++  L 
Sbjct: 91  GVHTVEPTEAGDYKLCFDNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEM--LD 148

Query: 166 LRVRQLVEQVEQIQK--EQNYQ-----RWREERFRQTSESTNQRVLWWSILQTLILVAIG 218
           +++  + E +E ++   E++ Q     R  E R R   E   +RV +WS +   +L+ + 
Sbjct: 149 VKMEDIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLLVA 208

Query: 219 VWQMRHLKSFFEAKKLV 235
           V Q+  LK FF+ K+ V
Sbjct: 209 VLQVCTLKRFFQDKRPV 225


>gi|21389573 transmembrane emp24 protein transport domain containing
           6 [Homo sapiens]
          Length = 240

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 10/132 (7%)

Query: 103 GSEGRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVHLDIQVGEHA--NDYAEIAAK-- 158
           G  G+  F++   G +Q+CL +    F     G ++V+L+  V       D+ +   K  
Sbjct: 101 GVRGQINFSTQETGFYQLCLSNQHNHF-----GSVQVYLNFGVFYEGPETDHKQKERKQL 155

Query: 159 -DKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRVLWWSILQTLILVAI 217
            D L  ++   +++   +  + +  N+ R R+       +S    V WWS  Q+L+++  
Sbjct: 156 NDTLDAIEDGTQKVQNNIFHMWRYYNFARMRKMADFFLIQSNYNYVNWWSTAQSLVIILS 215

Query: 218 GVWQMRHLKSFF 229
           G+ Q+  LK  F
Sbjct: 216 GILQLYFLKRLF 227


>gi|17402909 tripartite motif protein TRIM29 [Homo sapiens]
          Length = 588

 Score = 32.3 bits (72), Expect = 0.36
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 148 HANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRVL 204
           H+    E A  +K +EL L+  QL  Q++ I+ E   ++W++E+ R  S +TN++ +
Sbjct: 255 HSTVTVEEAKAEKETELSLQKEQL--QLKIIEIEDEAEKWQKEKDRIKSFTTNEKAI 309


>gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens]
          Length = 1317

 Score = 32.3 bits (72), Expect = 0.36
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 155 IAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRVLWWSILQTL 212
           +A K+K  E +LR +Q +E  ++ Q+E+ + R +EE  R    + N++   + I Q L
Sbjct: 673 LAEKEKFEEERLREQQEIELQKKRQEEETFLRVQEELQRLKELNNNEKAEKFQIFQEL 730


>gi|27436951 lamin B2 [Homo sapiens]
          Length = 600

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 150 NDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSES 198
           ND A  AA+++L E ++R+  L  Q+  +QK+ +     E+R R+  E+
Sbjct: 276 NDKAASAAREELKEARMRLESLSYQLSGLQKQASA---AEDRIRELEEA 321


>gi|150010604 kinesin family member 4B [Homo sapiens]
          Length = 1234

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 138 RVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSE 197
           RV L  Q+ E A  + +   K     +QL+ R    Q E ++ E+N+Q+      R+T E
Sbjct: 647 RVQLMRQMKEDAEKFRQWKQKKDKEVIQLKERDRKRQYELLKLERNFQKQSSVLRRKTEE 706

Query: 198 S 198
           +
Sbjct: 707 A 707


>gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b
           [Homo sapiens]
          Length = 293

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 14/48 (29%), Positives = 29/48 (60%)

Query: 156 AAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRV 203
           A K +L++++ +V  L+E +E+I+KEQ+ Q    +  +   E ++  V
Sbjct: 182 AIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSV 229


>gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a
           [Homo sapiens]
          Length = 306

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 14/48 (29%), Positives = 29/48 (60%)

Query: 156 AAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRV 203
           A K +L++++ +V  L+E +E+I+KEQ+ Q    +  +   E ++  V
Sbjct: 195 AIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSV 242


>gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b
           [Homo sapiens]
          Length = 293

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 14/48 (29%), Positives = 29/48 (60%)

Query: 156 AAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRV 203
           A K +L++++ +V  L+E +E+I+KEQ+ Q    +  +   E ++  V
Sbjct: 182 AIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSV 229


>gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a
           [Homo sapiens]
          Length = 306

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 14/48 (29%), Positives = 29/48 (60%)

Query: 156 AAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRV 203
           A K +L++++ +V  L+E +E+I+KEQ+ Q    +  +   E ++  V
Sbjct: 195 AIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSV 242


>gi|51972208 leucine, glutamate and lysine rich 1 [Homo sapiens]
          Length = 388

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 13/144 (9%)

Query: 67  QLYDKQREEYQPATPGLGMFVEVKDPEDKVILARQ--YGSEGRFTFTSHTPGEHQICLHS 124
           Q Y K++EE Q     L +    +D   +V   ++  + S  R+T  S++  +    L +
Sbjct: 140 QKYKKEQEELQMKISDL-ITGATRDLRQEVTTLKEKLHKSHTRYTEESNSKEKEIENLKN 198

Query: 125 NSTKFSLFAGGMLRVHLDIQVGEHANDYAEIAAK-DKLSELQLRVRQLVEQVEQIQKEQN 183
              +F       L+  +D       N   E+  K D+L  + L   QL+EQ  Q Q+E  
Sbjct: 199 LVAEFE----SRLKKEIDSNDSVSENLRKEMEQKSDELKRVMLAQTQLIEQFNQSQEENT 254

Query: 184 Y-----QRWREERFRQTSESTNQR 202
           +     +R  EERF  T   +  R
Sbjct: 255 FLQETVRRECEERFELTEALSQAR 278


>gi|190684694 ubiquitin specific peptidase 8 [Homo sapiens]
          Length = 1118

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 147 EHANDYAEIAA---KDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQR 202
           E A  +AE A    K+K  E +LR RQ  EQ E+++KE+  Q+ ++++  + +E T ++
Sbjct: 461 EKARIHAETALLMEKNK-QEKELRERQQEEQKEKLRKEEQEQKAKKKQEAEENEITEKQ 518


>gi|190684692 ubiquitin specific peptidase 8 [Homo sapiens]
          Length = 1118

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 147 EHANDYAEIAA---KDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQR 202
           E A  +AE A    K+K  E +LR RQ  EQ E+++KE+  Q+ ++++  + +E T ++
Sbjct: 461 EKARIHAETALLMEKNK-QEKELRERQQEEQKEKLRKEEQEQKAKKKQEAEENEITEKQ 518


>gi|190684690 ubiquitin specific peptidase 8 [Homo sapiens]
          Length = 1118

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 147 EHANDYAEIAA---KDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQR 202
           E A  +AE A    K+K  E +LR RQ  EQ E+++KE+  Q+ ++++  + +E T ++
Sbjct: 461 EKARIHAETALLMEKNK-QEKELRERQQEEQKEKLRKEEQEQKAKKKQEAEENEITEKQ 518


>gi|116686122 kinesin family member 4 [Homo sapiens]
          Length = 1232

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 138 RVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSE 197
           RV L  Q+ E A  + +   K     +QL+ R    Q E ++ E+N+Q+      R+T E
Sbjct: 647 RVQLMRQMKEDAEKFRQWKQKKDKEVIQLKERDRKRQYELLKLERNFQKQSNVLRRKTEE 706

Query: 198 S 198
           +
Sbjct: 707 A 707


>gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Homo
           sapiens]
          Length = 293

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 13/45 (28%), Positives = 28/45 (62%)

Query: 156 AAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTN 200
           A K +L++++ +V  L+E +E+I+KEQ+ Q    +  +   E ++
Sbjct: 182 AIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSS 226


>gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Homo
           sapiens]
          Length = 293

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 13/45 (28%), Positives = 28/45 (62%)

Query: 156 AAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTN 200
           A K +L++++ +V  L+E +E+I+KEQ+ Q    +  +   E ++
Sbjct: 182 AIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSS 226


>gi|57242782 MAX interactor 1 isoform a [Homo sapiens]
          Length = 228

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 13/47 (27%), Positives = 26/47 (55%)

Query: 157 AKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRV 203
           AK  + +L+   R+   Q+E +++EQ + +WR E+ +   E    R+
Sbjct: 112 AKAHIKKLEEAERKSQHQLENLEREQRFLKWRLEQLQGPQEMERIRM 158


>gi|47717116 MAX interactor 1 isoform b [Homo sapiens]
          Length = 295

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 13/47 (27%), Positives = 26/47 (55%)

Query: 157 AKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRV 203
           AK  + +L+   R+   Q+E +++EQ + +WR E+ +   E    R+
Sbjct: 179 AKAHIKKLEEAERKSQHQLENLEREQRFLKWRLEQLQGPQEMERIRM 225


>gi|57242784 MAX interactor 1 isoform c [Homo sapiens]
          Length = 182

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 13/47 (27%), Positives = 26/47 (55%)

Query: 157 AKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRV 203
           AK  + +L+   R+   Q+E +++EQ + +WR E+ +   E    R+
Sbjct: 66  AKAHIKKLEEAERKSQHQLENLEREQRFLKWRLEQLQGPQEMERIRM 112


>gi|21735548 centrosomal protein 2 [Homo sapiens]
          Length = 2442

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 13/56 (23%), Positives = 31/56 (55%)

Query: 143  IQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSES 198
            +Q      +  E + + +L E Q  + Q  +++E +Q+EQ   + +EER ++ +++
Sbjct: 1787 LQEAREQGELKEQSLQSQLDEAQRALAQRDQELEALQQEQQQAQGQEERVKEKADA 1842


>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
           sapiens]
          Length = 897

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 22/110 (20%)

Query: 17  GLGRVMRTLLLVLWLATRGSALYFHIGETEKKCFIEEIPDETMVIGNYRTQLYDKQREEY 76
           GLG+  +T+ L ++LA R                   + DE   +      +    +EE 
Sbjct: 74  GLGKTCQTIALFIYLAGR-------------------LNDEGPFLILCPLSVLSNWKEEM 114

Query: 77  QPATPGLGMFVEVKDPEDKVILARQYGSEGRFTFTSHTPGEHQICLHSNS 126
           Q   PGL       D E++  L +    E RF     T   ++ICL   S
Sbjct: 115 QRFAPGLSCVTYAGDKEERACLQQDLKQESRFHVLLTT---YEICLKDAS 161


>gi|110349721 titin isoform novex-3 [Homo sapiens]
          Length = 5604

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 143  IQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQ 194
            + V E     +E   KD L ELQL     +++ +  QKE+N  R+ E  FR+
Sbjct: 3887 VNVEESEEIASERIKKDDLRELQLSASTRIDEFKTEQKEEN-MRFFENSFRK 3937


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,825,803
Number of Sequences: 37866
Number of extensions: 370944
Number of successful extensions: 1455
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1356
Number of HSP's gapped (non-prelim): 109
length of query: 235
length of database: 18,247,518
effective HSP length: 99
effective length of query: 136
effective length of database: 14,498,784
effective search space: 1971834624
effective search space used: 1971834624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.