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Search of human proteins with 38683855
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38683855 pentatricopeptide repeat domain 3 [Homo sapiens]
(689 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38683855 pentatricopeptide repeat domain 3 [Homo sapiens] 1379 0.0
gi|38492358 pentatricopeptide repeat domain 1 [Homo sapiens] 39 0.021
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 32 1.5
gi|194294521 intersectin 2 isoform 1 [Homo sapiens] 32 2.0
gi|194294525 intersectin 2 isoform 2 [Homo sapiens] 32 2.0
gi|183396783 BCL-6 interacting corepressor isoform a [Homo sapiens] 32 2.6
gi|183396787 BCL-6 interacting corepressor isoform c [Homo sapiens] 32 2.6
gi|183396785 BCL-6 interacting corepressor isoform b [Homo sapiens] 32 2.6
gi|21071037 BCL-6 interacting corepressor isoform a [Homo sapiens] 32 2.6
gi|223555921 hepatocellular carcinoma related protein 1 isoform ... 31 3.3
gi|223555919 hepatocellular carcinoma related protein 1 isoform ... 31 3.3
gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I... 31 3.3
gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I... 31 3.3
gi|62988276 mitochondrial RNase P protein 3 [Homo sapiens] 31 4.4
gi|187608809 hypothetical protein LOC23240 isoform 2 [Homo sapiens] 31 4.4
gi|196114949 hypothetical protein LOC23240 isoform 1 [Homo sapiens] 31 4.4
gi|194294523 intersectin 2 isoform 3 [Homo sapiens] 31 4.4
gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens] 30 5.7
gi|32484979 adaptor-related protein complex 3, beta 1 subunit [H... 30 9.7
>gi|38683855 pentatricopeptide repeat domain 3 [Homo sapiens]
Length = 689
Score = 1379 bits (3568), Expect = 0.0
Identities = 689/689 (100%), Positives = 689/689 (100%)
Query: 1 MAVVSAVRWLGLRSRLGQPLTGRRAGLCEQARSCRFYSGSATLSKVEGTDVTGIEEVVIP 60
MAVVSAVRWLGLRSRLGQPLTGRRAGLCEQARSCRFYSGSATLSKVEGTDVTGIEEVVIP
Sbjct: 1 MAVVSAVRWLGLRSRLGQPLTGRRAGLCEQARSCRFYSGSATLSKVEGTDVTGIEEVVIP 60
Query: 61 KKKTWDKVAVLQALASTVNRDTTAVPYVFQDDPYLMPASSLESRSFLLAKKSGENVAKFI 120
KKKTWDKVAVLQALASTVNRDTTAVPYVFQDDPYLMPASSLESRSFLLAKKSGENVAKFI
Sbjct: 61 KKKTWDKVAVLQALASTVNRDTTAVPYVFQDDPYLMPASSLESRSFLLAKKSGENVAKFI 120
Query: 121 INSYPKYFQKDIAEPHIPCLMPEYFEPQIKDISEAALKERIELRKVKASVDMFDQLLQAG 180
INSYPKYFQKDIAEPHIPCLMPEYFEPQIKDISEAALKERIELRKVKASVDMFDQLLQAG
Sbjct: 121 INSYPKYFQKDIAEPHIPCLMPEYFEPQIKDISEAALKERIELRKVKASVDMFDQLLQAG 180
Query: 181 TTVSLETTNSLLDLLCYYGDQEPSTDYHFQQTGQSEALEEENDETSRRKAGHQFGVTWRA 240
TTVSLETTNSLLDLLCYYGDQEPSTDYHFQQTGQSEALEEENDETSRRKAGHQFGVTWRA
Sbjct: 181 TTVSLETTNSLLDLLCYYGDQEPSTDYHFQQTGQSEALEEENDETSRRKAGHQFGVTWRA 240
Query: 241 KNNAERIFSLMPEKNEHSYCTMIRGMVKHRAYEQALNLYTELLNNRLHADVYTFNALIEA 300
KNNAERIFSLMPEKNEHSYCTMIRGMVKHRAYEQALNLYTELLNNRLHADVYTFNALIEA
Sbjct: 241 KNNAERIFSLMPEKNEHSYCTMIRGMVKHRAYEQALNLYTELLNNRLHADVYTFNALIEA 300
Query: 301 TVCAINEKFEEKWSKILELLRHMVAQKVKPNLQTFNTILKCLRRFHVFARSPALQVLREM 360
TVCAINEKFEEKWSKILELLRHMVAQKVKPNLQTFNTILKCLRRFHVFARSPALQVLREM
Sbjct: 301 TVCAINEKFEEKWSKILELLRHMVAQKVKPNLQTFNTILKCLRRFHVFARSPALQVLREM 360
Query: 361 KAIGIEPSLATYHHIIRLFDQPGDPLKRSSFIIYDIMNELMGKRFSPKDPDDDKFFQSAM 420
KAIGIEPSLATYHHIIRLFDQPGDPLKRSSFIIYDIMNELMGKRFSPKDPDDDKFFQSAM
Sbjct: 361 KAIGIEPSLATYHHIIRLFDQPGDPLKRSSFIIYDIMNELMGKRFSPKDPDDDKFFQSAM 420
Query: 421 SICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYSKFFDLICLMEQIDVTLKWYED 480
SICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYSKFFDLICLMEQIDVTLKWYED
Sbjct: 421 SICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYSKFFDLICLMEQIDVTLKWYED 480
Query: 481 LIPSAYFPHSQTMIHLLQALDVANRLEVIPKIWKDSKEYGHTFRSDLREEILMLMARDKH 540
LIPSAYFPHSQTMIHLLQALDVANRLEVIPKIWKDSKEYGHTFRSDLREEILMLMARDKH
Sbjct: 481 LIPSAYFPHSQTMIHLLQALDVANRLEVIPKIWKDSKEYGHTFRSDLREEILMLMARDKH 540
Query: 541 PPELQVAFADCAADIKSAYESQPIRQTAQDWPATSLNCIAILFLRAGRTQEAWKMLGLFR 600
PPELQVAFADCAADIKSAYESQPIRQTAQDWPATSLNCIAILFLRAGRTQEAWKMLGLFR
Sbjct: 541 PPELQVAFADCAADIKSAYESQPIRQTAQDWPATSLNCIAILFLRAGRTQEAWKMLGLFR 600
Query: 601 KHNKIPRSELLNELMDSAKVSNSPSQAIEVVELASAFSLPICEGLTQRVMSDFAINQEQK 660
KHNKIPRSELLNELMDSAKVSNSPSQAIEVVELASAFSLPICEGLTQRVMSDFAINQEQK
Sbjct: 601 KHNKIPRSELLNELMDSAKVSNSPSQAIEVVELASAFSLPICEGLTQRVMSDFAINQEQK 660
Query: 661 EALSNLTALTSDSDTDSSSDSDSDTSEGK 689
EALSNLTALTSDSDTDSSSDSDSDTSEGK
Sbjct: 661 EALSNLTALTSDSDTDSSSDSDSDTSEGK 689
>gi|38492358 pentatricopeptide repeat domain 1 [Homo sapiens]
Length = 700
Score = 38.5 bits (88), Expect = 0.021
Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 37/156 (23%)
Query: 256 EHSYCTMIRGMVKHRAYEQALNLYTELLNNRLHADVYTFNALIEATVCAINEKFEEKWSK 315
E +Y +I G + ++A NLY ++ L T+ AL VCA + +
Sbjct: 173 ESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFN--VCAESPWKDSALQS 230
Query: 316 ILELLRHMVAQKVKPNLQTFNTILK----------CLRRF-------HVFARSP------ 352
L+L + + A+ + NL+T++ +LK CL F HV
Sbjct: 231 ALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLLM 290
Query: 353 ------------ALQVLREMKAIGIEPSLATYHHII 376
ALQV R M ++G++PS +Y+ ++
Sbjct: 291 GCIQDKKTGFRYALQVWRLMLSLGLQPSRDSYNLLL 326
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 32.3 bits (72), Expect = 1.5
Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 24/185 (12%)
Query: 150 KDISEAALKERI-----ELRKVKASVDMFDQLLQAGTTVSLETTNSLLDLLCYYGDQEPS 204
K + +A +E++ EL+K+K +V D+L A T++ + SL +
Sbjct: 958 KKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTV--------- 1008
Query: 205 TDYHFQQTGQSEALEEENDETSRRKAGHQFGVTWRAKNNAERIFSLMPEKNEHSYCTMIR 264
+ Q A E + E RKA RA+ E + +L+ +K E M +
Sbjct: 1009 -----MKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLEMEK 1063
Query: 265 GMVKHRAYEQALNLYTELLN---NRLHADVYTFNALIEATVCAINEKFEEKWSKILELLR 321
V A Q L + E LN R ++ +++ T FE +I EL R
Sbjct: 1064 TGVGTGANSQVLEI--EKLNETMERQRTEIARLQNVLDLTGSDNKGGFENVLEEIAELRR 1121
Query: 322 HMVAQ 326
+ Q
Sbjct: 1122 EVSYQ 1126
>gi|194294521 intersectin 2 isoform 1 [Homo sapiens]
Length = 1697
Score = 32.0 bits (71), Expect = 2.0
Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 605 IPRSELLNELMDSAKVSNSPSQAIEVVELASAFSLPICEGLTQRVMSDFAINQEQKEALS 664
+P +LLNE + + + SN+P + ++ S +C+ L +++ A+ +E LS
Sbjct: 555 VPEKQLLNERIKNMQFSNTPDSGVSLLHKKSLEKEELCQRLKEQL---DALEKETASKLS 611
Query: 665 NLTALTSDSDTDSSSDS 681
+ + + + DS
Sbjct: 612 EMDSFNNQLKCGNMDDS 628
>gi|194294525 intersectin 2 isoform 2 [Homo sapiens]
Length = 1249
Score = 32.0 bits (71), Expect = 2.0
Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 605 IPRSELLNELMDSAKVSNSPSQAIEVVELASAFSLPICEGLTQRVMSDFAINQEQKEALS 664
+P +LLNE + + + SN+P + ++ S +C+ L +++ A+ +E LS
Sbjct: 555 VPEKQLLNERIKNMQFSNTPDSGVSLLHKKSLEKEELCQRLKEQL---DALEKETASKLS 611
Query: 665 NLTALTSDSDTDSSSDS 681
+ + + + DS
Sbjct: 612 EMDSFNNQLKCGNMDDS 628
>gi|183396783 BCL-6 interacting corepressor isoform a [Homo sapiens]
Length = 1721
Score = 31.6 bits (70), Expect = 2.6
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 16/135 (11%)
Query: 279 YTELLNNRLHADVYTFNALIEATVCAINEKFEEKWSKILELLRHMVAQKVKPNLQTFNTI 338
Y E++ L + N A CA++E W L ++RH++ N +
Sbjct: 1441 YEEVVLYCLENKICDVNHRDNAGYCALHEACARGW---LNIVRHLLEYGADVNCSAQDGT 1497
Query: 339 LKCLRRFHVFARSPALQVLREMKAIGIEPSLATYHHIIRLFDQPGDPLKRSSFIIYDIMN 398
R H + L+++R + + G +P+LATY + + +++ + D +N
Sbjct: 1498 ----RPLHDAVENDHLEIVRLLLSYGADPTLATYSGRTIMKMTHSELMEK---FLTDYLN 1550
Query: 399 ELMGKRFSPKDPDDD 413
+L G+ DDD
Sbjct: 1551 DLQGRN------DDD 1559
>gi|183396787 BCL-6 interacting corepressor isoform c [Homo sapiens]
Length = 1755
Score = 31.6 bits (70), Expect = 2.6
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 16/135 (11%)
Query: 279 YTELLNNRLHADVYTFNALIEATVCAINEKFEEKWSKILELLRHMVAQKVKPNLQTFNTI 338
Y E++ L + N A CA++E W L ++RH++ N +
Sbjct: 1475 YEEVVLYCLENKICDVNHRDNAGYCALHEACARGW---LNIVRHLLEYGADVNCSAQDGT 1531
Query: 339 LKCLRRFHVFARSPALQVLREMKAIGIEPSLATYHHIIRLFDQPGDPLKRSSFIIYDIMN 398
R H + L+++R + + G +P+LATY + + +++ + D +N
Sbjct: 1532 ----RPLHDAVENDHLEIVRLLLSYGADPTLATYSGRTIMKMTHSELMEK---FLTDYLN 1584
Query: 399 ELMGKRFSPKDPDDD 413
+L G+ DDD
Sbjct: 1585 DLQGRN------DDD 1593
>gi|183396785 BCL-6 interacting corepressor isoform b [Homo sapiens]
Length = 1703
Score = 31.6 bits (70), Expect = 2.6
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 16/135 (11%)
Query: 279 YTELLNNRLHADVYTFNALIEATVCAINEKFEEKWSKILELLRHMVAQKVKPNLQTFNTI 338
Y E++ L + N A CA++E W L ++RH++ N +
Sbjct: 1423 YEEVVLYCLENKICDVNHRDNAGYCALHEACARGW---LNIVRHLLEYGADVNCSAQDGT 1479
Query: 339 LKCLRRFHVFARSPALQVLREMKAIGIEPSLATYHHIIRLFDQPGDPLKRSSFIIYDIMN 398
R H + L+++R + + G +P+LATY + + +++ + D +N
Sbjct: 1480 ----RPLHDAVENDHLEIVRLLLSYGADPTLATYSGRTIMKMTHSELMEK---FLTDYLN 1532
Query: 399 ELMGKRFSPKDPDDD 413
+L G+ DDD
Sbjct: 1533 DLQGRN------DDD 1541
>gi|21071037 BCL-6 interacting corepressor isoform a [Homo sapiens]
Length = 1721
Score = 31.6 bits (70), Expect = 2.6
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 16/135 (11%)
Query: 279 YTELLNNRLHADVYTFNALIEATVCAINEKFEEKWSKILELLRHMVAQKVKPNLQTFNTI 338
Y E++ L + N A CA++E W L ++RH++ N +
Sbjct: 1441 YEEVVLYCLENKICDVNHRDNAGYCALHEACARGW---LNIVRHLLEYGADVNCSAQDGT 1497
Query: 339 LKCLRRFHVFARSPALQVLREMKAIGIEPSLATYHHIIRLFDQPGDPLKRSSFIIYDIMN 398
R H + L+++R + + G +P+LATY + + +++ + D +N
Sbjct: 1498 ----RPLHDAVENDHLEIVRLLLSYGADPTLATYSGRTIMKMTHSELMEK---FLTDYLN 1550
Query: 399 ELMGKRFSPKDPDDD 413
+L G+ DDD
Sbjct: 1551 DLQGRN------DDD 1559
>gi|223555921 hepatocellular carcinoma related protein 1 isoform 2
[Homo sapiens]
Length = 372
Score = 31.2 bits (69), Expect = 3.3
Identities = 50/252 (19%), Positives = 94/252 (37%), Gaps = 29/252 (11%)
Query: 86 PYVFQDDPYLMP---------ASSLESRSFLLAKKSGENVAKFIINSYPKYFQKDIAEPH 136
PY Q P+L P +SL + + + AK S+ + P
Sbjct: 124 PYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHTTAKPAAPSFGVLSNLPLPIPT 183
Query: 137 IPCLMPE------YFEPQIKDISEAALKERIELRKVKASVDMFDQLLQAGTTVSLETTNS 190
+ +P Y P + D A E EL V DM +Q V LE +
Sbjct: 184 VDASIPTSQNGFGYKMPDVPD----AFPELSEL-SVSQLTDMNEQ-----EEVLLEQFLT 233
Query: 191 LLDLLCYYGDQEPSTDYHFQQTGQSEALEEENDETSRRKAGHQFGVTWRAKNNAERIFSL 250
L L D++ ++ + L E + E R+ ++ + + K+ E+
Sbjct: 234 LPQLKQIITDKDDLVK-SIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQR 292
Query: 251 MPEKNEHSYCTMIRGMVK---HRAYEQALNLYTELLNNRLHADVYTFNALIEATVCAINE 307
E +E + ++ +K H A E++ N+ + L ++ D + + + + T+C
Sbjct: 293 QHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKMEIDDFLSSFMEKRTICHCRR 352
Query: 308 KFEEKWSKILEL 319
EEK + + +
Sbjct: 353 AKEEKLQQAIAM 364
>gi|223555919 hepatocellular carcinoma related protein 1 isoform 1
[Homo sapiens]
Length = 397
Score = 31.2 bits (69), Expect = 3.3
Identities = 50/252 (19%), Positives = 94/252 (37%), Gaps = 29/252 (11%)
Query: 86 PYVFQDDPYLMP---------ASSLESRSFLLAKKSGENVAKFIINSYPKYFQKDIAEPH 136
PY Q P+L P +SL + + + AK S+ + P
Sbjct: 149 PYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHTTAKPAAPSFGVLSNLPLPIPT 208
Query: 137 IPCLMPE------YFEPQIKDISEAALKERIELRKVKASVDMFDQLLQAGTTVSLETTNS 190
+ +P Y P + D A E EL V DM +Q V LE +
Sbjct: 209 VDASIPTSQNGFGYKMPDVPD----AFPELSEL-SVSQLTDMNEQ-----EEVLLEQFLT 258
Query: 191 LLDLLCYYGDQEPSTDYHFQQTGQSEALEEENDETSRRKAGHQFGVTWRAKNNAERIFSL 250
L L D++ ++ + L E + E R+ ++ + + K+ E+
Sbjct: 259 LPQLKQIITDKDDLVK-SIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQR 317
Query: 251 MPEKNEHSYCTMIRGMVK---HRAYEQALNLYTELLNNRLHADVYTFNALIEATVCAINE 307
E +E + ++ +K H A E++ N+ + L ++ D + + + + T+C
Sbjct: 318 QHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKMEIDDFLSSFMEKRTICHCRR 377
Query: 308 KFEEKWSKILEL 319
EEK + + +
Sbjct: 378 AKEEKLQQAIAM 389
>gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform b [Homo sapiens]
Length = 2188
Score = 31.2 bits (69), Expect = 3.3
Identities = 54/247 (21%), Positives = 108/247 (43%), Gaps = 30/247 (12%)
Query: 272 YEQALNLYTELLN-NRLHADVYTFNALIEATVCAINEKFEEKWSK-----ILELLRHMVA 325
Y Q +L T L N + V+ A+++ + F+++W++ +L + +
Sbjct: 1474 YNQPTSLETALKYCNYMFTTVFVLEAVLKLVAFGLRRFFKDRWNQLDLAIVLLSVMGITL 1533
Query: 326 QKVKPN--LQTFNTILKCLRRFHVFARSPALQVLREMK-AIGIEPSLATYHHIIRLFDQP 382
++++ N L TI++ +R + +VL+ +K A G+ L T +++ Q
Sbjct: 1534 EEIEINAALPINPTIIRIMRVLRI------ARVLKLLKMATGMRALLDT---VVQALPQV 1584
Query: 383 GDP--LKRSSFIIYDIMN-ELMGKRFSPKDPDDDKFFQSAMSICSSLRDLELAYQVHGLL 439
G+ L F IY + EL GK +D+ MS ++ + +A+ +
Sbjct: 1585 GNLGLLFMLLFFIYAALGVELFGKLVC-----NDENPCEGMSRHATFENFGMAFLTLFQV 1639
Query: 440 KTGDNWKFIGPDQHRNFYYSKFFDLICLMEQIDVTLKWYEDLIPSAYFPHSQTMIH-LLQ 498
TGDNW I D R+ + + CL V+ ++ + +A F ++ L++
Sbjct: 1640 STGDNWNGIMKDTLRDCTHD---ERSCLSSLQFVSPLYFVSFVLTAQFVLINVVVAVLMK 1696
Query: 499 ALDVANR 505
LD +N+
Sbjct: 1697 HLDDSNK 1703
>gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform a [Homo sapiens]
Length = 2223
Score = 31.2 bits (69), Expect = 3.3
Identities = 54/247 (21%), Positives = 108/247 (43%), Gaps = 30/247 (12%)
Query: 272 YEQALNLYTELLN-NRLHADVYTFNALIEATVCAINEKFEEKWSK-----ILELLRHMVA 325
Y Q +L T L N + V+ A+++ + F+++W++ +L + +
Sbjct: 1509 YNQPTSLETALKYCNYMFTTVFVLEAVLKLVAFGLRRFFKDRWNQLDLAIVLLSVMGITL 1568
Query: 326 QKVKPN--LQTFNTILKCLRRFHVFARSPALQVLREMK-AIGIEPSLATYHHIIRLFDQP 382
++++ N L TI++ +R + +VL+ +K A G+ L T +++ Q
Sbjct: 1569 EEIEINAALPINPTIIRIMRVLRI------ARVLKLLKMATGMRALLDT---VVQALPQV 1619
Query: 383 GDP--LKRSSFIIYDIMN-ELMGKRFSPKDPDDDKFFQSAMSICSSLRDLELAYQVHGLL 439
G+ L F IY + EL GK +D+ MS ++ + +A+ +
Sbjct: 1620 GNLGLLFMLLFFIYAALGVELFGKLVC-----NDENPCEGMSRHATFENFGMAFLTLFQV 1674
Query: 440 KTGDNWKFIGPDQHRNFYYSKFFDLICLMEQIDVTLKWYEDLIPSAYFPHSQTMIH-LLQ 498
TGDNW I D R+ + + CL V+ ++ + +A F ++ L++
Sbjct: 1675 STGDNWNGIMKDTLRDCTHD---ERSCLSSLQFVSPLYFVSFVLTAQFVLINVVVAVLMK 1731
Query: 499 ALDVANR 505
LD +N+
Sbjct: 1732 HLDDSNK 1738
>gi|62988276 mitochondrial RNase P protein 3 [Homo sapiens]
Length = 583
Score = 30.8 bits (68), Expect = 4.4
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 250 LMPEKNEHSYCTMIRGMVKHRAYEQALNLYTELLNNRLHADVYTFNALIEATVCAINEKF 309
+ P K ++ C I+G + H+ A NLY ELL + + + T A + ++ +
Sbjct: 240 ITPSKKNYNDC--IQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNY 297
Query: 310 EEKWSKILELLRH 322
K IL LR+
Sbjct: 298 SNKLLDILSYLRN 310
>gi|187608809 hypothetical protein LOC23240 isoform 2 [Homo sapiens]
Length = 1609
Score = 30.8 bits (68), Expect = 4.4
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 111 KSGENVAKFIINSY-PKYFQKDIAEPHIPCLMPEYFEPQIKDISEAALKERIELRKVKAS 169
K+ EN A+F P K + E H+P P+Y +P + +IS ++ VK
Sbjct: 1091 KTSENTAEFKERELCPLKTSKKLPENHLPRNSPQYHQPDLPEISRKNNGNNQQV-PVKNE 1149
Query: 170 VDMFDQLLQAGTTVSLE 186
VD + L + T S E
Sbjct: 1150 VDHCENLKKVDTKPSSE 1166
>gi|196114949 hypothetical protein LOC23240 isoform 1 [Homo sapiens]
Length = 1610
Score = 30.8 bits (68), Expect = 4.4
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 111 KSGENVAKFIINSY-PKYFQKDIAEPHIPCLMPEYFEPQIKDISEAALKERIELRKVKAS 169
K+ EN A+F P K + E H+P P+Y +P + +IS ++ VK
Sbjct: 1092 KTSENTAEFKERELCPLKTSKKLPENHLPRNSPQYHQPDLPEISRKNNGNNQQV-PVKNE 1150
Query: 170 VDMFDQLLQAGTTVSLE 186
VD + L + T S E
Sbjct: 1151 VDHCENLKKVDTKPSSE 1167
>gi|194294523 intersectin 2 isoform 3 [Homo sapiens]
Length = 1670
Score = 30.8 bits (68), Expect = 4.4
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 605 IPRSELLNELMDSAKVSNSPSQAIEVVELASAFSLPICEGLTQRVMSDFAINQEQKEALS 664
+P +LLNE + + + SN+P + ++ S +C+ L ++ ++ +KE S
Sbjct: 555 VPEKQLLNERIKNMQFSNTPDSGVSLLHKKSLEKEELCQRLKEQ------LDALEKETAS 608
Query: 665 NLTALTS 671
L+ + S
Sbjct: 609 KLSEMDS 615
>gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens]
Length = 170
Score = 30.4 bits (67), Expect = 5.7
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 604 KIPRSELLNELMDSAKVSNSPSQAIEVVELASAFSLPICEGLTQRVMSDFAINQEQKEAL 663
K RS+ + S+ S++ + E E +++ S ++ +D + + A
Sbjct: 79 KKKRSKSVTSSSSSSSDSSASDSSSESEETSTSSS-------SEDSDTDESSSSSSSSAS 131
Query: 664 SNLTALTSDSDTDSSSDSDSDTS 686
S ++ +SDSD+DSSS S S TS
Sbjct: 132 STTSSSSSDSDSDSSSSSSSSTS 154
>gi|32484979 adaptor-related protein complex 3, beta 1 subunit [Homo
sapiens]
Length = 1094
Score = 29.6 bits (65), Expect = 9.7
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 613 ELMDSAKVSNSPS-QAIEVVELASAFSLPICEGLTQRVMSDFAINQEQKEALSNLTALTS 671
EL + +V+ PS + +EV+ELA ++ P + + F E++E +S
Sbjct: 635 ELSNWPEVAPDPSVRNVEVIELAKEWT-PAGKAKQENSAKKFYSESEEEED-------SS 686
Query: 672 DSDTDSSSDSDSDTSE 687
DS +DS S+S S++ E
Sbjct: 687 DSSSDSESESGSESGE 702
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,683,284
Number of Sequences: 37866
Number of extensions: 1046813
Number of successful extensions: 3384
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3360
Number of HSP's gapped (non-prelim): 35
length of query: 689
length of database: 18,247,518
effective HSP length: 109
effective length of query: 580
effective length of database: 14,120,124
effective search space: 8189671920
effective search space used: 8189671920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.