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Search of human proteins with 38569421
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38569421 ATP citrate lyase isoform 1 [Homo sapiens]
(1101 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38569421 ATP citrate lyase isoform 1 [Homo sapiens] 2218 0.0
gi|38569423 ATP citrate lyase isoform 2 [Homo sapiens] 2191 0.0
gi|109452591 succinate-CoA ligase, GDP-forming alpha subunit [Ho... 87 1e-16
gi|157779135 succinate-CoA ligase, GDP-forming beta subunit prec... 54 1e-06
gi|11321583 succinate-CoA ligase, ADP-forming, beta subunit prec... 50 1e-05
gi|239755885 PREDICTED: similar to hCG1791842 [Homo sapiens] 35 0.30
gi|239750402 PREDICTED: similar to hCG1791842 isoform 3 [Homo sa... 35 0.30
gi|239744702 PREDICTED: similar to sucb isoform 1 [Homo sapiens] 35 0.30
gi|62865633 Sp3 transcription factor isoform 2 [Homo sapiens] 35 0.30
gi|38373693 Sp3 transcription factor isoform 1 [Homo sapiens] 35 0.30
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens] 33 1.1
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 33 1.1
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 33 1.1
gi|61742814 coiled-coil and C2 domain containing 1B [Homo sapiens] 33 1.9
gi|4503519 eukaryotic translation initiation factor 3, subunit 5... 32 2.5
gi|8923528 hypothetical protein LOC54980 [Homo sapiens] 32 2.5
gi|21618331 carnitine acetyltransferase precursor [Homo sapiens] 32 3.3
gi|226246533 TOX high mobility group box family member 3 isoform... 32 3.3
gi|226054295 TOX high mobility group box family member 3 isoform... 32 3.3
gi|239753515 PREDICTED: hypothetical protein [Homo sapiens] 32 3.3
gi|239748147 PREDICTED: hypothetical protein XP_002346538 [Homo ... 32 3.3
gi|239742045 PREDICTED: hypothetical protein XP_002342378 [Homo ... 32 3.3
gi|239741896 PREDICTED: hypothetical protein XP_002342335 [Homo ... 32 3.3
gi|122937249 glutamate receptor interacting protein 2 [Homo sapi... 31 5.6
gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens] 31 7.4
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 31 7.4
gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [H... 30 9.6
gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [H... 30 9.6
gi|10835091 bone morphogenetic protein 5 preproprotein [Homo sap... 30 9.6
gi|24797103 RAS guanyl releasing protein 2 [Homo sapiens] 30 9.6
>gi|38569421 ATP citrate lyase isoform 1 [Homo sapiens]
Length = 1101
Score = 2218 bits (5748), Expect = 0.0
Identities = 1101/1101 (100%), Positives = 1101/1101 (100%)
Query: 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60
MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD
Sbjct: 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60
Query: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
Query: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180
VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180
Query: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240
LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240
Query: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300
PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300
Query: 301 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRA 360
LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRA
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRA 360
Query: 361 IRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALG 420
IRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALG
Sbjct: 361 IRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALG 420
Query: 421 HRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQDSVP 480
HRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQDSVP
Sbjct: 421 HRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQDSVP 480
Query: 481 SPRSLQGKSTTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQK 540
SPRSLQGKSTTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQK
Sbjct: 481 SPRSLQGKSTTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQK 540
Query: 541 FYWGHKEILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEG 600
FYWGHKEILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEG
Sbjct: 541 FYWGHKEILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEG 600
Query: 601 IPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYV 660
IPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYV
Sbjct: 601 IPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYV 660
Query: 661 SRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIG 720
SRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIG
Sbjct: 661 SRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIG 720
Query: 721 GTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALK 780
GTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALK
Sbjct: 721 GTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALK 780
Query: 781 EAGVFVPRSFDELGEIIQSVYEDLVANGVIVPAQEVPPPTVPMDYSWARELGLIRKPASF 840
EAGVFVPRSFDELGEIIQSVYEDLVANGVIVPAQEVPPPTVPMDYSWARELGLIRKPASF
Sbjct: 781 EAGVFVPRSFDELGEIIQSVYEDLVANGVIVPAQEVPPPTVPMDYSWARELGLIRKPASF 840
Query: 841 MTSICDERGQELIYAGMPITEVFKEEMGIGGVLGLLWFQKRLPKYSCQFIEMCLMVTADH 900
MTSICDERGQELIYAGMPITEVFKEEMGIGGVLGLLWFQKRLPKYSCQFIEMCLMVTADH
Sbjct: 841 MTSICDERGQELIYAGMPITEVFKEEMGIGGVLGLLWFQKRLPKYSCQFIEMCLMVTADH 900
Query: 901 GPAVSGAHNTIICARAGKDLVSSLTSGLLTIGDRFGGALDAAAKMFSKAFDSGIIPMEFV 960
GPAVSGAHNTIICARAGKDLVSSLTSGLLTIGDRFGGALDAAAKMFSKAFDSGIIPMEFV
Sbjct: 901 GPAVSGAHNTIICARAGKDLVSSLTSGLLTIGDRFGGALDAAAKMFSKAFDSGIIPMEFV 960
Query: 961 NKMKKEGKLIMGIGHRVKSINNPDMRVQILKDYVRQHFPATPLLDYALEVEKITTSKKPN 1020
NKMKKEGKLIMGIGHRVKSINNPDMRVQILKDYVRQHFPATPLLDYALEVEKITTSKKPN
Sbjct: 961 NKMKKEGKLIMGIGHRVKSINNPDMRVQILKDYVRQHFPATPLLDYALEVEKITTSKKPN 1020
Query: 1021 LILNVDGLIGVAFVDMLRNCGSFTREEADEYIDIGALNGIFVLGRSMGFIGHYLDQKRLK 1080
LILNVDGLIGVAFVDMLRNCGSFTREEADEYIDIGALNGIFVLGRSMGFIGHYLDQKRLK
Sbjct: 1021 LILNVDGLIGVAFVDMLRNCGSFTREEADEYIDIGALNGIFVLGRSMGFIGHYLDQKRLK 1080
Query: 1081 QGLYRHPWDDISYVLPEHMSM 1101
QGLYRHPWDDISYVLPEHMSM
Sbjct: 1081 QGLYRHPWDDISYVLPEHMSM 1101
>gi|38569423 ATP citrate lyase isoform 2 [Homo sapiens]
Length = 1091
Score = 2191 bits (5677), Expect = 0.0
Identities = 1091/1101 (99%), Positives = 1091/1101 (99%), Gaps = 10/1101 (0%)
Query: 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60
MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD
Sbjct: 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60
Query: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
Query: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180
VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180
Query: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240
LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240
Query: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300
PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300
Query: 301 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRA 360
LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRA
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRA 360
Query: 361 IRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALG 420
IRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALG
Sbjct: 361 IRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALG 420
Query: 421 HRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQDSVP 480
HRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQ
Sbjct: 421 HRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQ---- 476
Query: 481 SPRSLQGKSTTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQK 540
GKSTTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQK
Sbjct: 477 ------GKSTTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQK 530
Query: 541 FYWGHKEILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEG 600
FYWGHKEILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEG
Sbjct: 531 FYWGHKEILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEG 590
Query: 601 IPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYV 660
IPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYV
Sbjct: 591 IPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYV 650
Query: 661 SRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIG 720
SRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIG
Sbjct: 651 SRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIG 710
Query: 721 GTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALK 780
GTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALK
Sbjct: 711 GTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALK 770
Query: 781 EAGVFVPRSFDELGEIIQSVYEDLVANGVIVPAQEVPPPTVPMDYSWARELGLIRKPASF 840
EAGVFVPRSFDELGEIIQSVYEDLVANGVIVPAQEVPPPTVPMDYSWARELGLIRKPASF
Sbjct: 771 EAGVFVPRSFDELGEIIQSVYEDLVANGVIVPAQEVPPPTVPMDYSWARELGLIRKPASF 830
Query: 841 MTSICDERGQELIYAGMPITEVFKEEMGIGGVLGLLWFQKRLPKYSCQFIEMCLMVTADH 900
MTSICDERGQELIYAGMPITEVFKEEMGIGGVLGLLWFQKRLPKYSCQFIEMCLMVTADH
Sbjct: 831 MTSICDERGQELIYAGMPITEVFKEEMGIGGVLGLLWFQKRLPKYSCQFIEMCLMVTADH 890
Query: 901 GPAVSGAHNTIICARAGKDLVSSLTSGLLTIGDRFGGALDAAAKMFSKAFDSGIIPMEFV 960
GPAVSGAHNTIICARAGKDLVSSLTSGLLTIGDRFGGALDAAAKMFSKAFDSGIIPMEFV
Sbjct: 891 GPAVSGAHNTIICARAGKDLVSSLTSGLLTIGDRFGGALDAAAKMFSKAFDSGIIPMEFV 950
Query: 961 NKMKKEGKLIMGIGHRVKSINNPDMRVQILKDYVRQHFPATPLLDYALEVEKITTSKKPN 1020
NKMKKEGKLIMGIGHRVKSINNPDMRVQILKDYVRQHFPATPLLDYALEVEKITTSKKPN
Sbjct: 951 NKMKKEGKLIMGIGHRVKSINNPDMRVQILKDYVRQHFPATPLLDYALEVEKITTSKKPN 1010
Query: 1021 LILNVDGLIGVAFVDMLRNCGSFTREEADEYIDIGALNGIFVLGRSMGFIGHYLDQKRLK 1080
LILNVDGLIGVAFVDMLRNCGSFTREEADEYIDIGALNGIFVLGRSMGFIGHYLDQKRLK
Sbjct: 1011 LILNVDGLIGVAFVDMLRNCGSFTREEADEYIDIGALNGIFVLGRSMGFIGHYLDQKRLK 1070
Query: 1081 QGLYRHPWDDISYVLPEHMSM 1101
QGLYRHPWDDISYVLPEHMSM
Sbjct: 1071 QGLYRHPWDDISYVLPEHMSM 1091
>gi|109452591 succinate-CoA ligase, GDP-forming alpha subunit [Homo
sapiens]
Length = 346
Score = 86.7 bits (213), Expect = 1e-16
Identities = 79/267 (29%), Positives = 124/267 (46%), Gaps = 25/267 (9%)
Query: 544 GHKEILIPVFKNMADAMRKHPEVDVLIN----FASLRSAYDSTMETMNYAQIRTIAIIAE 599
G + +PVF + +A + +I FA+ +A + +E A+I + I E
Sbjct: 92 GQTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAA--AAINEAIE----AEIPLVVCITE 145
Query: 600 GIPEA-LTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVA 658
GIP+ + R K Q+ +IGP G I PG KIG I+ +++ G +
Sbjct: 146 GIPQQDMVRVKHKLLRQEKTRLIGPNCPGVINPGECKIG--------IMPGHIHKKGRIG 197
Query: 659 YVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGE 718
VSRSG ++ E + ++ G V IGGD + G+ F+D + + + + I+++GE
Sbjct: 198 IVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFIDCLEIFLNDSATEGIILIGE 257
Query: 719 IGGTEEYKICRGIKE---GRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAK 775
IGG E +K+ G +KP+V + G A + GHAGA A K
Sbjct: 258 IGGNAEENAAEFLKQHNSGPNSKPVVSFIAGLTA---PPGRRMGHAGAIIAGGKGGAKEK 314
Query: 776 NQALKEAGVFVPRSFDELGEIIQSVYE 802
AL+ AGV V S +LG I +E
Sbjct: 315 ISALQSAGVVVSMSPAQLGTTIYKEFE 341
>gi|157779135 succinate-CoA ligase, GDP-forming beta subunit
precursor [Homo sapiens]
Length = 432
Score = 53.5 bits (127), Expect = 1e-06
Identities = 80/297 (26%), Positives = 123/297 (41%), Gaps = 43/297 (14%)
Query: 116 AEEFYVCIYATRE--GDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNP-EDIKKHLLVH 172
+ E Y+ I R G ++ +GGVD+ +V A +L+ E+++ E IK
Sbjct: 149 SRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIF--KEQIDIFEGIKDSQAQR 206
Query: 173 APEDK------KEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVDATA 225
E+ K A I+ L+N + + T +E+NP T +G V D D A
Sbjct: 207 MAENLGFVGPLKSQAADQITKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNA 266
Query: 226 DYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGAS 285
++ K DI F E P E A D K + G I V G G +
Sbjct: 267 EFRQK----DI-FAMDDKSENEPIENEAAKYDLK--------YIGLDGNIACFVNGAGLA 313
Query: 286 VVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIA 345
+ D I GG + AN+ + G E Q Y K L+T + + ++ I G I
Sbjct: 314 MATCDIIFLNGG--KPANFLDLGGGVKEAQVYQAFK----LLTADPKVEAILVNIFGGIV 367
Query: 346 NFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPI 402
N +A GI +A R+ E +V + VR G N QE +++ +G+PI
Sbjct: 368 NCAIIA---NGITKACREL-----ELKVPLVVRLEGTNVQEAQKIL----NNSGLPI 412
>gi|11321583 succinate-CoA ligase, ADP-forming, beta subunit
precursor [Homo sapiens]
Length = 463
Score = 50.1 bits (118), Expect = 1e-05
Identities = 69/286 (24%), Positives = 121/286 (42%), Gaps = 35/286 (12%)
Query: 118 EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHA-- 173
E+Y I R +G ++ GGV++ DV A++ + ++ + E IKK +
Sbjct: 166 EYYFAITMERSFQGPVLIGSSHGGVNIEDVAAESPEAIIKEPIDIE-EGIKKEQALQLAQ 224
Query: 174 ----PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYIC 229
P + E A + L++ + T +EINP+V DG VL + AK++ ++
Sbjct: 225 KMGFPPNIVESAAENMVKLYSLFLKYDATMIEINPMVEDSDGA-VLCMDAKINFDSNSAY 283
Query: 230 KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289
+ K F + + +E D K A L + G I +V G G ++
Sbjct: 284 RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 332
Query: 290 DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349
D I GG AN+ + G + Q + K L+T +K ++ I G I
Sbjct: 333 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLAILVNIFGGIMRCDV 386
Query: 350 VAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVG 395
+A +GIV A++D E ++ + VR G + ++ + G
Sbjct: 387 IA---QGIVMAVKDL-----EIKIPVVVRLQGTRVDDAKALIADSG 424
>gi|239755885 PREDICTED: similar to hCG1791842 [Homo sapiens]
Length = 536
Score = 35.4 bits (80), Expect = 0.30
Identities = 55/215 (25%), Positives = 84/215 (39%), Gaps = 28/215 (13%)
Query: 178 KEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVDATADYICKVKWGDI 236
K A I+ L+N + + T +E+NP T +G V D D A++ K DI
Sbjct: 323 KSQAADQITKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFQQK----DI 378
Query: 237 EFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLG 296
F E P E A D K + G I V G G ++ D I G
Sbjct: 379 -FAMDDKSENEPIENEAAKYDLK--------YIGLDGNIACFVNGAGLAMATCDIIFLNG 429
Query: 297 GVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKG 356
+ A++ + G E Q Y +L T + + ++ I G I N +A G
Sbjct: 430 --RKPASFLDLGGGVKEAQVYQ----AFTLPTADPKVEAILVNIFGGIVNCAIIA---NG 480
Query: 357 IVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVM 391
I +A ++ E +V + V G N QE ++
Sbjct: 481 ITKACQEL-----ELKVPLVVWLEGTNVQEAQEIL 510
>gi|239750402 PREDICTED: similar to hCG1791842 isoform 3 [Homo
sapiens]
Length = 543
Score = 35.4 bits (80), Expect = 0.30
Identities = 55/215 (25%), Positives = 84/215 (39%), Gaps = 28/215 (13%)
Query: 178 KEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVDATADYICKVKWGDI 236
K A I+ L+N + + T +E+NP T +G V D D A++ K DI
Sbjct: 330 KSQAADQITKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFQQK----DI 385
Query: 237 EFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLG 296
F E P E A D K + G I V G G ++ D I G
Sbjct: 386 -FAMDDKSENEPIENEAAKYDLK--------YIGLDGNIACFVNGAGLAMATCDIIFLNG 436
Query: 297 GVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKG 356
+ A++ + G E Q Y +L T + + ++ I G I N +A G
Sbjct: 437 --RKPASFLDLGGGVKEAQVYQ----AFTLPTADPKVEAILVNIFGGIVNCAIIA---NG 487
Query: 357 IVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVM 391
I +A ++ E +V + V G N QE ++
Sbjct: 488 ITKACQEL-----ELKVPLVVWLEGTNVQEAQEIL 517
>gi|239744702 PREDICTED: similar to sucb isoform 1 [Homo sapiens]
Length = 543
Score = 35.4 bits (80), Expect = 0.30
Identities = 55/215 (25%), Positives = 84/215 (39%), Gaps = 28/215 (13%)
Query: 178 KEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVDATADYICKVKWGDI 236
K A I+ L+N + + T +E+NP T +G V D D A++ K DI
Sbjct: 330 KSQAADQITKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFQQK----DI 385
Query: 237 EFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLG 296
F E P E A D K + G I V G G ++ D I G
Sbjct: 386 -FAMDDKSENEPIENEAAKYDLK--------YIGLDGNIACFVNGAGLAMATCDIIFLNG 436
Query: 297 GVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKG 356
+ A++ + G E Q Y +L T + + ++ I G I N +A G
Sbjct: 437 --RKPASFLDLGGGVKEAQVYQ----AFTLPTADPKVEAILVNIFGGIVNCAIIA---NG 487
Query: 357 IVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVM 391
I +A ++ E +V + V G N QE ++
Sbjct: 488 ITKACQEL-----ELKVPLVVWLEGTNVQEAQEIL 517
>gi|62865633 Sp3 transcription factor isoform 2 [Homo sapiens]
Length = 713
Score = 35.4 bits (80), Expect = 0.30
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 654 PGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGST 696
PGS + SG S + N+I +T +GVAIGG +PG T
Sbjct: 140 PGSNQTLLASGTPSANIQNLIPQTGQVQVQGVAIGGSSFPGQT 182
>gi|38373693 Sp3 transcription factor isoform 1 [Homo sapiens]
Length = 781
Score = 35.4 bits (80), Expect = 0.30
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 654 PGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGST 696
PGS + SG S + N+I +T +GVAIGG +PG T
Sbjct: 208 PGSNQTLLASGTPSANIQNLIPQTGQVQVQGVAIGGSSFPGQT 250
>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
Length = 2440
Score = 33.5 bits (75), Expect = 1.1
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 17/137 (12%)
Query: 362 RDYQGPLKEHEVTIFVRRGGPNYQEGL------RVMGEVGKTTGIPIHVFGTETHMTAIV 415
R Y+GPL + ++ P+ Q+ L MG+V +T + H+ I+
Sbjct: 2008 RQYEGPLHHYRP----QQESPSPQQQLPPSSQAEGMGQVPRTH----RLITLADHICQII 2059
Query: 416 GMALGHRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTAS--FSESRADEVAPAKKAKPA 473
+ +Q P T+ F + S STP ++T++ ES+A V +
Sbjct: 2060 TQDFARNQVSSQTPQQPPTSTFQNSPSALVSTPVRTKTSNRYSPESQAQSVHHQRPGSRV 2119
Query: 474 MPQDSVPSPR-SLQGKS 489
P++ V R S GKS
Sbjct: 2120 SPENLVDKSRGSRPGKS 2136
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 33.5 bits (75), Expect = 1.1
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 412 TAIVGMALGHRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAK 471
T+ + + G + P Q P + HT+ L G + +P S AS ++SR+ ++PA
Sbjct: 663 TSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGS-PASVAQSRSGPLSPA---- 717
Query: 472 PAMPQDSVPSPRSLQGKSTTL 492
A+P + +P PR G+S ++
Sbjct: 718 -AVPGNQMP-PRPPSGQSDSI 736
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 33.5 bits (75), Expect = 1.1
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 412 TAIVGMALGHRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAK 471
T+ + + G + P Q P + HT+ L G + +P S AS ++SR+ ++PA
Sbjct: 663 TSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGS-PASVAQSRSGPLSPA---- 717
Query: 472 PAMPQDSVPSPRSLQGKSTTL 492
A+P + +P PR G+S ++
Sbjct: 718 -AVPGNQMP-PRPPSGQSDSI 736
>gi|61742814 coiled-coil and C2 domain containing 1B [Homo sapiens]
Length = 858
Score = 32.7 bits (73), Expect = 1.9
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 417 MALGHRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQ 476
+ALG RP+ Q P N S T PAP S + S+ + P A+P
Sbjct: 225 VALGKRPLAPQEPA---------NRSPETDPPAPPALESDNPSQPETSLPGISAQPVSDL 275
Query: 477 DSVPSPRSL 485
D P PR+L
Sbjct: 276 D--PDPRAL 282
>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa [Homo sapiens]
Length = 357
Score = 32.3 bits (72), Expect = 2.5
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 412 TAIVGMALGHRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAK 471
T + A P P P AA AS S A + TA+ ++ A APA+
Sbjct: 16 TPVPAAAPASVPAPTPAPAAAPVPA-AAPASSSDPAAAAAATAAPGQTPASAQAPAQTPA 74
Query: 472 PAMPQDSVPSP 482
PA+P ++P P
Sbjct: 75 PALPGPALPGP 85
>gi|8923528 hypothetical protein LOC54980 [Homo sapiens]
Length = 574
Score = 32.3 bits (72), Expect = 2.5
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Query: 442 SGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQDSVPSPRSLQGKSTTLFSRHTKAIV 501
S ST + S + + R DEV+ A+ +PQD+V S G + + K
Sbjct: 288 SESTVSACESTASKSKKRRKDEVSGAQMNSSLLPQDAVSSNLRKSGLKKPVVASSLKRQA 347
Query: 502 WGMQTRAVQGMLDF-DYVCSRDEPSVAAMVYPFTG 535
G Q L F D++ S E M Y F G
Sbjct: 348 CGQLLDEAQVTLSFQDWLASVTERIHQTMHYQFDG 382
>gi|21618331 carnitine acetyltransferase precursor [Homo sapiens]
Length = 626
Score = 32.0 bits (71), Expect = 3.3
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 33/140 (23%)
Query: 895 MVTADHGPAVSGAHNTIICARAGKDLVSSLTSGLLTIGDRFGGALDAAAKMFSKAFDSGI 954
++T++H + + A+NT+I + +D V S+ + T+ LDA S
Sbjct: 250 ILTSNHRNSWAKAYNTLIKDKVNRDSVRSIQKSIFTV------CLDATMPRVS------- 296
Query: 955 IPMEFVNKMKKEGKLIMGIGHRVKSIN---NPDMRVQILKD----YVRQHF-----PATP 1002
E V + G+++ G G R+ S N + ++ + +D V +H P
Sbjct: 297 ---EDVYRSHVAGQMLHGGGSRLNSGNRWFDKTLQFIVAEDGSCGLVYEHAAAEGPPIVT 353
Query: 1003 LLDYALEVEKITTSKKPNLI 1022
LLDY +E +KKP L+
Sbjct: 354 LLDYVIEY-----TKKPELV 368
>gi|226246533 TOX high mobility group box family member 3 isoform 2
[Homo sapiens]
Length = 571
Score = 32.0 bits (71), Expect = 3.3
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 25/117 (21%)
Query: 408 ETHMTAIVGMALGHRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPA 467
++ ++A +G+ LG +P+ P+ + ++TP+PS +S +E ADE A
Sbjct: 174 QSQLSAQLGLNLGGASMPHTSPSPP---------ASKSATPSPS--SSINEEDADEANRA 222
Query: 468 KKAKPAMPQDSVPSPRSLQGK-------------STTLFSRHTKAIVWGMQTRAVQG 511
K A P DS P++ + K + LF R T+A + G A G
Sbjct: 223 IGEKRAAP-DSGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFG 278
>gi|226054295 TOX high mobility group box family member 3 isoform 1
[Homo sapiens]
Length = 576
Score = 32.0 bits (71), Expect = 3.3
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 25/117 (21%)
Query: 408 ETHMTAIVGMALGHRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPA 467
++ ++A +G+ LG +P+ P+ + ++TP+PS +S +E ADE A
Sbjct: 179 QSQLSAQLGLNLGGASMPHTSPSPP---------ASKSATPSPS--SSINEEDADEANRA 227
Query: 468 KKAKPAMPQDSVPSPRSLQGK-------------STTLFSRHTKAIVWGMQTRAVQG 511
K A P DS P++ + K + LF R T+A + G A G
Sbjct: 228 IGEKRAAP-DSGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFG 283
>gi|239753515 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 32.0 bits (71), Expect = 3.3
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 2/120 (1%)
Query: 390 VMGEVGKTTGIPIHVFGTETHMTAIVGMALGHRPIPNQPPTAAHTANFLLNASGSTSTPA 449
V+G G G P ++ T +G A G +P +P ++ + G +T
Sbjct: 29 VLGFTGAPAGSPAALYATPLVCPVQMG-ATGTKPGSWEPGAVRKGREYMPLSDGLITTGG 87
Query: 450 PSRTASFSESRADEVAPAKKAKPAMPQDSVPSPRSLQGKS-TTLFSRHTKAIVWGMQTRA 508
PS AS + +R A + A P P +Q + SR A+ WG + A
Sbjct: 88 PSSKASTTAARKLPGASSPIGAGAAASLECPRPAGIQLRGLAQTGSRRVLAVTWGRRRNA 147
>gi|239748147 PREDICTED: hypothetical protein XP_002346538 [Homo
sapiens]
Length = 176
Score = 32.0 bits (71), Expect = 3.3
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 2/120 (1%)
Query: 390 VMGEVGKTTGIPIHVFGTETHMTAIVGMALGHRPIPNQPPTAAHTANFLLNASGSTSTPA 449
V+G G G P ++ T +G A G +P +P ++ + G +T
Sbjct: 29 VLGFTGAPAGSPAALYATPLVCPVQMG-ATGTKPGSWEPGAVRKGREYMPLSDGLITTGG 87
Query: 450 PSRTASFSESRADEVAPAKKAKPAMPQDSVPSPRSLQGKS-TTLFSRHTKAIVWGMQTRA 508
PS AS + +R A + A P P +Q + SR A+ WG + A
Sbjct: 88 PSSKASTTAARKLPGASSPIGAGAAASLECPRPAGIQLRGLAQTGSRRVLAVTWGRRRNA 147
>gi|239742045 PREDICTED: hypothetical protein XP_002342378 [Homo
sapiens]
Length = 176
Score = 32.0 bits (71), Expect = 3.3
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 2/120 (1%)
Query: 390 VMGEVGKTTGIPIHVFGTETHMTAIVGMALGHRPIPNQPPTAAHTANFLLNASGSTSTPA 449
V+G G G P ++ T +G A G +P +P ++ + G +T
Sbjct: 29 VLGFTGAPAGSPAALYATPLVCPVQMG-ATGTKPGSWEPGAVRKGREYMPLSDGLITTGG 87
Query: 450 PSRTASFSESRADEVAPAKKAKPAMPQDSVPSPRSLQGKS-TTLFSRHTKAIVWGMQTRA 508
PS AS + +R A + A P P +Q + SR A+ WG + A
Sbjct: 88 PSSKASTTAARKLPGASSPIGAGAAASLECPRPAGIQLRGLAQTGSRRVLAVTWGRRRNA 147
>gi|239741896 PREDICTED: hypothetical protein XP_002342335 [Homo
sapiens]
Length = 347
Score = 32.0 bits (71), Expect = 3.3
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 419 LGHRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMP 475
+G +P+P Q + A A+ S + PA A E VAP A+PA+P
Sbjct: 192 VGPKPLPEQERSGASGRCLPAPAAFSAAAPARRPPACLPEGEDAPVAPPSSARPALP 248
>gi|122937249 glutamate receptor interacting protein 2 [Homo
sapiens]
Length = 1141
Score = 31.2 bits (69), Expect = 5.6
Identities = 61/266 (22%), Positives = 100/266 (37%), Gaps = 47/266 (17%)
Query: 244 REAYPEE---AYIADLDAKSGASLKLTLL-----NPKGRIWTMVAGGGASVVYSDTICDL 295
R++ PEE + +L K G++L LT+ + K R+ + GG L
Sbjct: 133 RQSIPEEFRGITVVELIKKEGSTLGLTISGGTDKDGKPRVSNLRPGG------------L 180
Query: 296 GGVNELANYGEY----SGAPSEQQTYDYAKTILSLMTRE-----------KHPDGKILII 340
++L N G+Y +G + +D T+L + P+ II
Sbjct: 181 AARSDLLNIGDYIRSVNGIHLTRLRHDEIITLLKNVGERVVLEVEYELPPPAPENNPRII 240
Query: 341 GGSI-ANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEG-LRVMGEVGKTT 398
++ + +F ++R G V +VR GGP +EG L+V +
Sbjct: 241 SKTVDVSLYKEGNSFGFVLRGGAHEDGHKSRPLVLTYVRPGGPADREGSLKVGDRLLSVD 300
Query: 399 GIPIHVFGTETHMTAIVGMALGHRPIPNQPPTAAHTANFLLNASGS-----TSTPAPSRT 453
GIP+H +H TA+ + Q T + + NASG TP +
Sbjct: 301 GIPLH---GASHATALATLRQCSHEALFQVEYDVATPDTVANASGPLMVEIVKTPGSALG 357
Query: 454 ASFSES--RADEVAPAKKAKPAMPQD 477
S + + R V + KPA D
Sbjct: 358 ISLTTTSLRNKSVITIDRIKPASVVD 383
>gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens]
Length = 1217
Score = 30.8 bits (68), Expect = 7.4
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 1003 LLDYALEVEKITTSKKPNLILNVDGLIGVAFVDMLRNCGSFTREEADEYIDIGALNG 1059
+++ A+ + ITT+ +P L+ + D GV F + + + T E A ++++ +G
Sbjct: 1161 IMELAVHAQFITTTFRPELLESADKFYGVKFRNKVSHIDVITAEMAKDFVEDDTTHG 1217
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 30.8 bits (68), Expect = 7.4
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 423 PIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQDSVPSP 482
P+P PP A A L+++ S+ T S A+ ++ + AP P P + P+P
Sbjct: 1601 PLPPVPPPAVAAAPPTLDSTASSLTSYDSEVATLTQGAS--AAPGDPHPPGPPAPAAPAP 1658
Query: 483 RSLQ 486
+ Q
Sbjct: 1659 AAPQ 1662
>gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [Homo
sapiens]
Length = 756
Score = 30.4 bits (67), Expect = 9.6
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
Query: 447 TPAPSRTASFSESRADEVAPAKKAKPAMPQDSVPSPR---------SLQGKSTT 491
TP P +TA+ A E AP+ K PA D VPSP S+ G ST+
Sbjct: 353 TPMPDKTATPERPPAPENAPSSKKIPA--PDKVPSPEKTLTLGDKASIPGNSTS 404
>gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [Homo
sapiens]
Length = 645
Score = 30.4 bits (67), Expect = 9.6
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
Query: 447 TPAPSRTASFSESRADEVAPAKKAKPAMPQDSVPSPR---------SLQGKSTT 491
TP P +TA+ A E AP+ K PA D VPSP S+ G ST+
Sbjct: 242 TPMPDKTATPERPPAPENAPSSKKIPA--PDKVPSPEKTLTLGDKASIPGNSTS 293
>gi|10835091 bone morphogenetic protein 5 preproprotein [Homo
sapiens]
Length = 454
Score = 30.4 bits (67), Expect = 9.6
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 417 MALGHRPIPNQPPTAAHTANF----LLNASGSTSTPAPSRTASFSESRADEVAPAKKAKP 472
+ L HRP P P A +A L NA + P S S S A+E A+K P
Sbjct: 59 LGLPHRPRPFSPGKQASSAPLFMLDLYNAMTNEENPEESE-YSVRASLAEETRGARKGYP 117
Query: 473 AMPQDSVPSPRSLQGKSTT 491
A P PR +Q TT
Sbjct: 118 ASPNG---YPRRIQLSRTT 133
>gi|24797103 RAS guanyl releasing protein 2 [Homo sapiens]
Length = 609
Score = 30.4 bits (67), Expect = 9.6
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 25/122 (20%)
Query: 983 PDMRVQILKDYVRQHFPATPLLDYAL---EVEKITTSKKPNLILNVDGLIGV-------- 1031
P R +L+++ A P LD AL +EK+ S N ++ DG I
Sbjct: 400 PPPRPPVLEEWTSA---AKPKLDQALVVEHIEKMVESVFRNFDVDGDGHISQEEFQIIRG 456
Query: 1032 ------AFVDMLRNC-GSFTREEADEYIDIGALNGIFVLGRSMGFIGHYLDQKRLKQGLY 1084
AF D+ +N G +REE Y L VLG MGF+ ++ + L+
Sbjct: 457 NFPYLSAFGDLDQNQDGCISREEMVSYF----LRSSSVLGGRMGFVHNFQESNSLRPVAC 512
Query: 1085 RH 1086
RH
Sbjct: 513 RH 514
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,012,931
Number of Sequences: 37866
Number of extensions: 1942575
Number of successful extensions: 5251
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 5230
Number of HSP's gapped (non-prelim): 43
length of query: 1101
length of database: 18,247,518
effective HSP length: 113
effective length of query: 988
effective length of database: 13,968,660
effective search space: 13801036080
effective search space used: 13801036080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.