Guide to the Human Genome
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Name: PTGER1 Sequence: fasta or formatted (402aa) NCBI GI: 38505194
Description:

prostaglandin E receptor 1, subtype EP1

Referenced in:

G-Protein-coupled Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.2         65           2
 C cysteine            2.7         11           1
 D aspartate           1.0          4           1
 E glutamate           1.2          5           1
 F phenylalanine       3.0         12           2
 G glycine            10.2         41           2
 H histidine           1.7          7           1
 I isoleucine          2.0          8           1
 K lysine              0.2          1           1
 L leucine            16.4         66           3
 M methionine          1.7          7           1
 N asparagine          1.2          5           1
 P proline             7.0         28           3
 Q glutamine           2.0          8           1
 R arginine            9.5         38           4
 S serine             10.0         40           2
 T threonine           3.2         13           2
 V valine              7.2         29           2
 W tryptophan          2.5         10           1
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prostaglandin E receptor 1, subtype EP1 
PTGFR                 0.258   prostaglandin F receptor isoform a precursor 
TBXA2R                0.219   thromboxane A2 receptor 
PTGFR                 0.194   prostaglandin F receptor isoform b precursor 
PTGER3                0.179   prostaglandin E receptor 3, subtype EP3 isoform 3 [H...
PTGER3                0.179   prostaglandin E receptor 3, subtype EP3 isoform 5 [H...
PTGER3                0.179   prostaglandin E receptor 3, subtype EP3 isoform 1 [H...
PTGER3                0.178   prostaglandin E receptor 3, subtype EP3 isoform 2 [H...
PTGER3                0.178   prostaglandin E receptor 3, subtype EP3 isoform 4 [H...
PTGER3                0.178   prostaglandin E receptor 3, subtype EP3 isoform 8 [H...
PTGER3                0.178   prostaglandin E receptor 3, subtype EP3 isoform 6 [H...
PTGER3                0.178   prostaglandin E receptor 3, subtype EP3 isoform 4 [H...
PTGER3                0.178   prostaglandin E receptor 3, subtype EP3 isoform 4 [...
PTGER3                0.178   prostaglandin E receptor 3, subtype EP3 isoform 7 [H...
PTGER4                0.136   prostaglandin E receptor 4, subtype EP4 
PTGER2                0.132   prostaglandin E receptor 2 (subtype EP2), 53kDa [Hom...
PTGIR                 0.116   prostaglandin I2 (prostacyclin) receptor (IP) 
PTGDR                 0.087   prostaglandin D2 receptor 
ADRB3                 0.044   adrenergic, beta-3-, receptor 
CNR1                  0.035   cannabinoid receptor 1 isoform a 
CNR1                  0.035   cannabinoid receptor 1 isoform a 
CNR1                  0.035   cannabinoid receptor 1 isoform a 
CNR1                  0.035   cannabinoid receptor 1 isoform a 
CNR1                  0.035   cannabinoid receptor 1 isoform a 
CNR1                  0.035   cannabinoid receptor 1 isoform b 
GPR26                 0.032   G protein-coupled receptor 26 
AVPR2                 0.029   arginine vasopressin receptor 2 isoform 1 
ADRB1                 0.025   beta-1-adrenergic receptor 
S1PR5                 0.025   endothelial differentiation, sphingolipid G-protein-...
ADRA1D                0.025   alpha-1D-adrenergic receptor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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