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Search of human proteins with 38201665
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38201665 inhibitor of growth family, member 1 isoform B
[Homo sapiens]
(210 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38201667 inhibitor of growth family, member 1 isoform A [Homo... 438 e-123
gi|38201665 inhibitor of growth family, member 1 isoform B [Homo... 438 e-123
gi|38201663 inhibitor of growth family, member 1 isoform C [Homo... 438 e-123
gi|38201661 inhibitor of growth family, member 1 isoform D [Homo... 438 e-123
gi|4504695 inhibitor of growth family, member 2 [Homo sapiens] 256 7e-69
gi|189083830 inhibitor of growth family, member 4 isoform 5 [Hom... 146 1e-35
gi|189083821 inhibitor of growth family, member 4 isoform 9 [Hom... 146 1e-35
gi|189083826 inhibitor of growth family, member 4 isoform 3 [Hom... 145 2e-35
gi|38201670 inhibitor of growth family, member 4 isoform 1 [Homo... 145 2e-35
gi|18644730 inhibitor of growth family, member 5 [Homo sapiens] 145 2e-35
gi|189083828 inhibitor of growth family, member 4 isoform 4 [Hom... 144 4e-35
gi|38201655 inhibitor of growth family, member 3 isoform 1 [Homo... 119 2e-27
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 52 5e-07
gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens] 51 8e-07
gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens] 51 8e-07
gi|13699811 WHSC1L1 protein isoform long [Homo sapiens] 50 2e-06
gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 47 1e-05
gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 47 1e-05
gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 47 1e-05
gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isofor... 47 1e-05
gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo ... 47 1e-05
gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo ... 47 1e-05
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 46 3e-05
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 45 3e-05
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 45 4e-05
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 45 4e-05
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 45 4e-05
gi|27477095 nuclear receptor binding SET domain protein 1 isofor... 44 1e-04
gi|19923586 nuclear receptor binding SET domain protein 1 isofor... 44 1e-04
gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo ... 43 2e-04
>gi|38201667 inhibitor of growth family, member 1 isoform A [Homo
sapiens]
Length = 279
Score = 438 bits (1126), Expect = e-123
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKA 60
MLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKA
Sbjct: 70 MLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKA 129
Query: 61 GADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKR 120
GADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKR
Sbjct: 130 GADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKR 189
Query: 121 SKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKG 180
SKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKG
Sbjct: 190 SKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKG 249
Query: 181 KWYCPKCRGENEKTMDKALEKSKKERAYNR 210
KWYCPKCRGENEKTMDKALEKSKKERAYNR
Sbjct: 250 KWYCPKCRGENEKTMDKALEKSKKERAYNR 279
>gi|38201665 inhibitor of growth family, member 1 isoform B [Homo
sapiens]
Length = 210
Score = 438 bits (1126), Expect = e-123
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKA 60
MLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKA
Sbjct: 1 MLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKA 60
Query: 61 GADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKR 120
GADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKR
Sbjct: 61 GADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKR 120
Query: 121 SKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKG 180
SKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKG
Sbjct: 121 SKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKG 180
Query: 181 KWYCPKCRGENEKTMDKALEKSKKERAYNR 210
KWYCPKCRGENEKTMDKALEKSKKERAYNR
Sbjct: 181 KWYCPKCRGENEKTMDKALEKSKKERAYNR 210
>gi|38201663 inhibitor of growth family, member 1 isoform C [Homo
sapiens]
Length = 235
Score = 438 bits (1126), Expect = e-123
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKA 60
MLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKA
Sbjct: 26 MLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKA 85
Query: 61 GADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKR 120
GADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKR
Sbjct: 86 GADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKR 145
Query: 121 SKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKG 180
SKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKG
Sbjct: 146 SKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKG 205
Query: 181 KWYCPKCRGENEKTMDKALEKSKKERAYNR 210
KWYCPKCRGENEKTMDKALEKSKKERAYNR
Sbjct: 206 KWYCPKCRGENEKTMDKALEKSKKERAYNR 235
>gi|38201661 inhibitor of growth family, member 1 isoform D [Homo
sapiens]
Length = 422
Score = 438 bits (1126), Expect = e-123
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKA 60
MLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKA
Sbjct: 213 MLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKA 272
Query: 61 GADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKR 120
GADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKR
Sbjct: 273 GADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKR 332
Query: 121 SKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKG 180
SKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKG
Sbjct: 333 SKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKG 392
Query: 181 KWYCPKCRGENEKTMDKALEKSKKERAYNR 210
KWYCPKCRGENEKTMDKALEKSKKERAYNR
Sbjct: 393 KWYCPKCRGENEKTMDKALEKSKKERAYNR 422
>gi|4504695 inhibitor of growth family, member 2 [Homo sapiens]
Length = 280
Score = 256 bits (655), Expect = 7e-69
Identities = 124/202 (61%), Positives = 154/202 (76%), Gaps = 10/202 (4%)
Query: 5 VQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKAGADR 64
+QRALI SQELGDEKIQIV+QM+ELVENR RQ++ H + F+ E + A + K + +
Sbjct: 86 LQRALINSQELGDEKIQIVTQMLELVENRARQMELHSQCFQDPAE-SERASDKAKMDSSQ 144
Query: 65 PKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKRSKAK 124
P+ +S+R RRQR +E+R+ + +D PKEKK+K++KKKKRSKAK
Sbjct: 145 PER---------SSRRPRRQRTSESRDLCHMANGIEDCDDQPPKEKKSKSAKKKKRSKAK 195
Query: 125 AEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYC 184
EREASP + IDPNEPTYCLCNQVSYGEMIGCDN++CPIEWFHFSCV L +KPKGKWYC
Sbjct: 196 QEREASPVEFAIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYC 255
Query: 185 PKCRGENEKTMDKALEKSKKER 206
PKCRG+NEKTMDK+ EK+KK+R
Sbjct: 256 PKCRGDNEKTMDKSTEKTKKDR 277
>gi|189083830 inhibitor of growth family, member 4 isoform 5 [Homo
sapiens]
Length = 225
Score = 146 bits (369), Expect = 1e-35
Identities = 75/195 (38%), Positives = 111/195 (56%), Gaps = 12/195 (6%)
Query: 1 MLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKA 60
+L +Q A + +E GD+K+Q+ Q E+V+ R++D+ + FEA +L + S
Sbjct: 40 LLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLDTDLARFEA--DLKEKQIESSDY 97
Query: 61 GADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKR 120
+ KG+ + K K++ R R+ N D + + K K +TS +
Sbjct: 98 DSSSSKGKKKGRTQK--EKKAARARSK------GKNSDEEAPKTAQKKLKLVRTSPEYGM 149
Query: 121 SKAK--AEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKP 178
+ + D+P+DPNEPTYCLC+QVSYGEMIGCDN +C IEWFHF+CVGL KP
Sbjct: 150 PSVTFGSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKP 209
Query: 179 KGKWYCPKCRGENEK 193
+GKW+CP+C E +K
Sbjct: 210 RGKWFCPRCSQERKK 224
>gi|189083821 inhibitor of growth family, member 4 isoform 9 [Homo
sapiens]
Length = 249
Score = 146 bits (369), Expect = 1e-35
Identities = 75/195 (38%), Positives = 111/195 (56%), Gaps = 12/195 (6%)
Query: 1 MLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKA 60
+L +Q A + +E GD+K+Q+ Q E+V+ R++D+ + FEA +L + S
Sbjct: 64 LLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLDTDLARFEA--DLKEKQIESSDY 121
Query: 61 GADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKR 120
+ KG+ + K K++ R R+ N D + + K K +TS +
Sbjct: 122 DSSSSKGKKKGRTQK--EKKAARARSK------GKNSDEEAPKTAQKKLKLVRTSPEYGM 173
Query: 121 SKAK--AEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKP 178
+ + D+P+DPNEPTYCLC+QVSYGEMIGCDN +C IEWFHF+CVGL KP
Sbjct: 174 PSVTFGSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKP 233
Query: 179 KGKWYCPKCRGENEK 193
+GKW+CP+C E +K
Sbjct: 234 RGKWFCPRCSQERKK 248
>gi|189083826 inhibitor of growth family, member 4 isoform 3 [Homo
sapiens]
Length = 246
Score = 145 bits (367), Expect = 2e-35
Identities = 74/197 (37%), Positives = 110/197 (55%), Gaps = 19/197 (9%)
Query: 1 MLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKA 60
+L +Q A + +E GD+K+Q+ Q E+V+ R++D+ + FEA
Sbjct: 64 LLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLDTDLARFEADL------------ 111
Query: 61 GADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKK--AKTSKKK 118
+ K ++ D +SK R Q+ + S + D+ A T ++K +TS +
Sbjct: 112 ---KEKQIESSDYDSSSSKEGRTQKEKKAARARSKGKNSDEEAPKTAQKKLKLVRTSPEY 168
Query: 119 KRSKAK--AEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNH 176
+ + D+P+DPNEPTYCLC+QVSYGEMIGCDN +C IEWFHF+CVGL
Sbjct: 169 GMPSVTFGSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTT 228
Query: 177 KPKGKWYCPKCRGENEK 193
KP+GKW+CP+C E +K
Sbjct: 229 KPRGKWFCPRCSQERKK 245
>gi|38201670 inhibitor of growth family, member 4 isoform 1 [Homo
sapiens]
Length = 248
Score = 145 bits (367), Expect = 2e-35
Identities = 72/195 (36%), Positives = 111/195 (56%), Gaps = 13/195 (6%)
Query: 1 MLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKA 60
+L +Q A + +E GD+K+Q+ Q E+V+ R++D+ + FEA +L + S
Sbjct: 64 LLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLDTDLARFEA--DLKEKQIESSDY 121
Query: 61 GADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKR 120
+ KG+ + R+++++ + N D + + K K +TS +
Sbjct: 122 DSSSSKGKKS---------RTQKEKKAARARSKGKNSDEEAPKTAQKKLKLVRTSPEYGM 172
Query: 121 SKAK--AEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKP 178
+ + D+P+DPNEPTYCLC+QVSYGEMIGCDN +C IEWFHF+CVGL KP
Sbjct: 173 PSVTFGSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKP 232
Query: 179 KGKWYCPKCRGENEK 193
+GKW+CP+C E +K
Sbjct: 233 RGKWFCPRCSQERKK 247
>gi|18644730 inhibitor of growth family, member 5 [Homo sapiens]
Length = 240
Score = 145 bits (367), Expect = 2e-35
Identities = 76/195 (38%), Positives = 108/195 (55%), Gaps = 24/195 (12%)
Query: 2 LHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQE---LGDTAGNSG 58
L +Q A + +E D+K+Q+ Q E+V+ R++D+ + FEA + G +SG
Sbjct: 65 LQKIQNAYSKCKEYSDDKVQLAMQTYEMVDKHIRRLDADLARFEADLKDKMEGSDFESSG 124
Query: 59 KAGADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKK 118
G + +G+ + +R + R +S D TPK+KK K +
Sbjct: 125 GRGLKKGRGQ-------------KEKRGSRGRGRRTSEED-------TPKKKKHKGGSEF 164
Query: 119 KRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKP 178
+ + D+P+DPNEPTYCLC+QVSYGEMIGCDN +CPIEWFHF+CV L KP
Sbjct: 165 TDTILSVH-PSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKP 223
Query: 179 KGKWYCPKCRGENEK 193
KGKW+CP+C E K
Sbjct: 224 KGKWFCPRCVQEKRK 238
>gi|189083828 inhibitor of growth family, member 4 isoform 4 [Homo
sapiens]
Length = 245
Score = 144 bits (364), Expect = 4e-35
Identities = 72/196 (36%), Positives = 110/196 (56%), Gaps = 18/196 (9%)
Query: 1 MLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKA 60
+L +Q A + +E GD+K+Q+ Q E+V+ R++D+ + FEA
Sbjct: 64 LLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLDTDLARFEADL------------ 111
Query: 61 GADRPKGEAAAQADKPNSK-RSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKK 119
+ K ++ D +SK R+++++ + N D + + K K +TS +
Sbjct: 112 ---KEKQIESSDYDSSSSKGRTQKEKKAARARSKGKNSDEEAPKTAQKKLKLVRTSPEYG 168
Query: 120 RSKAK--AEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHK 177
+ + D+P+DPNEPTYCLC+QVSYGEMIGCDN +C IEWFHF+CVGL K
Sbjct: 169 MPSVTFGSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTK 228
Query: 178 PKGKWYCPKCRGENEK 193
P+GKW+CP+C E +K
Sbjct: 229 PRGKWFCPRCSQERKK 244
>gi|38201655 inhibitor of growth family, member 3 isoform 1 [Homo
sapiens]
Length = 418
Score = 119 bits (298), Expect = 2e-27
Identities = 61/178 (34%), Positives = 87/178 (48%), Gaps = 10/178 (5%)
Query: 18 EKIQIVSQMVELVENRTRQVDSHVELFEAQQ-ELG-------DTAGNSGKAGADRPKGEA 69
+ +Q +QM E RT + + E F+ +LG +T G S + +
Sbjct: 231 QAVQATAQMKE--GRRTSSLKASYEAFKNNDFQLGKEFSMARETVGYSSSSALMTTLTQN 288
Query: 70 AAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREA 129
A+ + + + + NN++ SS+ S ++ +
Sbjct: 289 ASSSAADSRSGRKSKNNNKSSSQQSSSSSSSSSLSSCSSSSTVVQEISQQTTVVPESDSN 348
Query: 130 SPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKC 187
S D DPNEP YC+CNQVSYGEM+GCDN +CPIEWFH+ CVGL PKGKWYCP+C
Sbjct: 349 SQVDWTYDPNEPRYCICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQC 406
Score = 33.1 bits (74), Expect = 0.18
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 5 VQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKAGADR 64
+++ ++ E DEK+Q+ +Q+ +LV+ R++D + F+ + E D AG + +R
Sbjct: 65 IKKDYYKALEDADEKVQLANQIYDLVDRHLRKLDQELAKFKMELE-ADNAGIT--EILER 121
Query: 65 PKGEAAAQADKPNSKRSRRQRNNENRE-NASSNHDHDDGASGTPKEKKAKTSKKKKRSKA 123
E + N+ + E R+ N +S+H D EKK K+ +
Sbjct: 122 RSLELDTPSQPVNNHHAHSHTPVEKRKYNPTSHHTTTDHI----PEKKFKSEALLSTLTS 177
Query: 124 KAERE 128
A +E
Sbjct: 178 DASKE 182
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 51.6 bits (122), Expect = 5e-07
Identities = 53/199 (26%), Positives = 80/199 (40%), Gaps = 43/199 (21%)
Query: 20 IQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKAGADRPKGEAAA-QADKPNS 78
+ +V MV E V + +A+ + G G +PKG A KP
Sbjct: 234 VAVVESMVTATEVAPPPPPVEVPIRKAKTKEG-----KGPNARRKPKGSPRVPDAKKPKP 288
Query: 79 KR------------SRRQRNNENRENASSNHDHDDGA------------SGTPKEKKAKT 114
K+ S+R+R++ ++ D DD + + KK +T
Sbjct: 289 KKVAPLKIKLGGFGSKRKRSSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLRT 348
Query: 115 SKKKKRSKAKAEREASPADLPIDPNEPTYC-LCNQVSYGEMIGCDNDECPIEWFHFSCVG 173
+KKKK K E E + D + + YC +C Q GE+I CD CP +H C+
Sbjct: 349 TKKKK----KGEEEVTAVD-GYETDHQDYCEVCQQG--GEIILCDT--CP-RAYHMVCLD 398
Query: 174 --LNHKPKGKWYCPKCRGE 190
+ P+GKW CP C E
Sbjct: 399 PDMEKAPEGKWSCPHCEKE 417
Score = 32.7 bits (73), Expect = 0.23
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 152 GEMIGCDNDECPIEWFHFSCVG--LNHKPKGKWYCPKC 187
GE++ CD CP +H C+ L P G+W CP+C
Sbjct: 459 GELLCCDT--CPSS-YHIHCLNPPLPEIPNGEWLCPRC 493
Score = 31.2 bits (69), Expect = 0.67
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 17/83 (20%)
Query: 76 PNSKRSRRQRNNENRENASSNHD---------------HDDGASGTPKEKKAKT--SKKK 118
P SKR +++R R+ S+ + +G+ TP +KK K KK+
Sbjct: 66 PKSKRQKKERMLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKE 125
Query: 119 KRSKAKAEREASPADLPIDPNEP 141
K+SK+K + E D D EP
Sbjct: 126 KKSKSKRKEEEEEEDDDDDSKEP 148
>gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens]
Length = 660
Score = 50.8 bits (120), Expect = 8e-07
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 139 NEPTYCLCNQVSYG-EMIGCDNDECPIEWFHFSCVGLNHKPKG---KWYCPKCRGENEKT 194
N P YC+C + MIGCDN EWFH C+ + K +WYC +CR ++ K
Sbjct: 24 NAPIYCICRKPDINCFMIGCDNCN---EWFHGDCIRITEKMAKAIREWYCRECREKDPKL 80
Query: 195 MDKALEKSKKERAYN 209
+ K +ER N
Sbjct: 81 EIRYRHKKSRERDGN 95
>gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens]
Length = 656
Score = 50.8 bits (120), Expect = 8e-07
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 139 NEPTYCLCNQVSYG-EMIGCDNDECPIEWFHFSCVGLNHKPKG---KWYCPKCRGENEKT 194
N P YC+C + MIGCDN EWFH C+ + K +WYC +CR ++ K
Sbjct: 24 NAPIYCICRKPDINCFMIGCDNCN---EWFHGDCIRITEKMAKAIREWYCRECREKDPKL 80
Query: 195 MDKALEKSKKERAYN 209
+ K +ER N
Sbjct: 81 EIRYRHKKSRERDGN 95
>gi|13699811 WHSC1L1 protein isoform long [Homo sapiens]
Length = 1437
Score = 49.7 bits (117), Expect = 2e-06
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Query: 103 ASGTPKEKKAKTSK-KKKRSKAKAEREASPADLPIDPNEPTYCL-CNQVSYGEMIGCDND 160
A + E+KAK +K K+KR K K E + D YC C GE++ CD
Sbjct: 1291 ACASTNEEKAKNAKLKQKRRKIKTEPKQMHED---------YCFQCGDG--GELVMCDKK 1339
Query: 161 ECPIEWFHFSCVGLNHKPKGKWYCP 185
+CP + +H C+ L P GKW CP
Sbjct: 1340 DCP-KAYHLLCLNLTQPPYGKWECP 1363
Score = 35.8 bits (81), Expect = 0.027
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 15/124 (12%)
Query: 75 KPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADL 134
KP KRSR + E +S+ D D S + + K+ A A+ + S
Sbjct: 628 KPLKKRSRASTDVEM--TSSAYRDTSDSDSRGLSDLQVGFGKQVDSPSATADADVSDVQ- 684
Query: 135 PIDPN----------EPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYC 184
+D + + T C + S +I C+ + C + FH C+GL P K+ C
Sbjct: 685 SMDSSLSRRGTGMSKKDTVCQICESSGDSLIPCEGECC--KHFHLECLGLASLPDSKFIC 742
Query: 185 PKCR 188
+C+
Sbjct: 743 MECK 746
>gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 47.0 bits (110), Expect = 1e-05
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 108 KEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWF 167
+EK KT KK +R +AK E + D E C G+++ CD C + +
Sbjct: 1215 EEKGKKTKKKTRRRRAKGEGKRQSED------ECFRC----GDGGQLVLCDRKFCT-KAY 1263
Query: 168 HFSCVGLNHKPKGKWYCP 185
H SC+GL +P GKW CP
Sbjct: 1264 HLSCLGLGKRPFGKWECP 1281
Score = 40.4 bits (93), Expect = 0.001
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Query: 28 ELVENRTRQVDSHVELFEAQQELGDTAGNSGKAGADRP-----KGEAAAQADKPNSKRSR 82
+ + ++T + S+ + EA L A + A +P + AA + SK S
Sbjct: 560 DTITDKTARTSSY-KAMEAASSLKSQAATKNLSDACKPLKKRNRASTAASSALGFSKSSS 618
Query: 83 RQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPT 142
+ E + S D S +P E +T + S K+ER + E
Sbjct: 619 PSASLTENEVSDSPGDEP---SESPYESADETQTEVSVSSKKSERGVTAK------KEYV 669
Query: 143 YCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKC 187
LC + G ++ C+ C FH +C+GL+ +P+G++ C +C
Sbjct: 670 CQLCEKP--GSLLLCEGPCCGA--FHLACLGLSRRPEGRFTCSEC 710
Score = 28.9 bits (63), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 152 GEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKCR 188
G ++ C++ CP FH C+ + P G W+C CR
Sbjct: 841 GSLLCCES--CPAA-FHPDCLNIE-MPDGSWFCNDCR 873
>gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 47.0 bits (110), Expect = 1e-05
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 108 KEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWF 167
+EK KT KK +R +AK E + D E C G+++ CD C + +
Sbjct: 1215 EEKGKKTKKKTRRRRAKGEGKRQSED------ECFRC----GDGGQLVLCDRKFCT-KAY 1263
Query: 168 HFSCVGLNHKPKGKWYCP 185
H SC+GL +P GKW CP
Sbjct: 1264 HLSCLGLGKRPFGKWECP 1281
Score = 40.4 bits (93), Expect = 0.001
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Query: 28 ELVENRTRQVDSHVELFEAQQELGDTAGNSGKAGADRP-----KGEAAAQADKPNSKRSR 82
+ + ++T + S+ + EA L A + A +P + AA + SK S
Sbjct: 560 DTITDKTARTSSY-KAMEAASSLKSQAATKNLSDACKPLKKRNRASTAASSALGFSKSSS 618
Query: 83 RQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPT 142
+ E + S D S +P E +T + S K+ER + E
Sbjct: 619 PSASLTENEVSDSPGDEP---SESPYESADETQTEVSVSSKKSERGVTAK------KEYV 669
Query: 143 YCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKC 187
LC + G ++ C+ C FH +C+GL+ +P+G++ C +C
Sbjct: 670 CQLCEKP--GSLLLCEGPCCGA--FHLACLGLSRRPEGRFTCSEC 710
Score = 28.9 bits (63), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 152 GEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKCR 188
G ++ C++ CP FH C+ + P G W+C CR
Sbjct: 841 GSLLCCES--CPAA-FHPDCLNIE-MPDGSWFCNDCR 873
>gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 47.0 bits (110), Expect = 1e-05
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 108 KEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWF 167
+EK KT KK +R +AK E + D E C G+++ CD C + +
Sbjct: 1215 EEKGKKTKKKTRRRRAKGEGKRQSED------ECFRC----GDGGQLVLCDRKFCT-KAY 1263
Query: 168 HFSCVGLNHKPKGKWYCP 185
H SC+GL +P GKW CP
Sbjct: 1264 HLSCLGLGKRPFGKWECP 1281
Score = 40.4 bits (93), Expect = 0.001
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Query: 28 ELVENRTRQVDSHVELFEAQQELGDTAGNSGKAGADRP-----KGEAAAQADKPNSKRSR 82
+ + ++T + S+ + EA L A + A +P + AA + SK S
Sbjct: 560 DTITDKTARTSSY-KAMEAASSLKSQAATKNLSDACKPLKKRNRASTAASSALGFSKSSS 618
Query: 83 RQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPT 142
+ E + S D S +P E +T + S K+ER + E
Sbjct: 619 PSASLTENEVSDSPGDEP---SESPYESADETQTEVSVSSKKSERGVTAK------KEYV 669
Query: 143 YCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKC 187
LC + G ++ C+ C FH +C+GL+ +P+G++ C +C
Sbjct: 670 CQLCEKP--GSLLLCEGPCCGA--FHLACLGLSRRPEGRFTCSEC 710
Score = 28.9 bits (63), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 152 GEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKCR 188
G ++ C++ CP FH C+ + P G W+C CR
Sbjct: 841 GSLLCCES--CPAA-FHPDCLNIE-MPDGSWFCNDCR 873
>gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 47.0 bits (110), Expect = 1e-05
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 108 KEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWF 167
+EK KT KK +R +AK E + D E C G+++ CD C + +
Sbjct: 1215 EEKGKKTKKKTRRRRAKGEGKRQSED------ECFRC----GDGGQLVLCDRKFCT-KAY 1263
Query: 168 HFSCVGLNHKPKGKWYCP 185
H SC+GL +P GKW CP
Sbjct: 1264 HLSCLGLGKRPFGKWECP 1281
Score = 40.4 bits (93), Expect = 0.001
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Query: 28 ELVENRTRQVDSHVELFEAQQELGDTAGNSGKAGADRP-----KGEAAAQADKPNSKRSR 82
+ + ++T + S+ + EA L A + A +P + AA + SK S
Sbjct: 560 DTITDKTARTSSY-KAMEAASSLKSQAATKNLSDACKPLKKRNRASTAASSALGFSKSSS 618
Query: 83 RQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPT 142
+ E + S D S +P E +T + S K+ER + E
Sbjct: 619 PSASLTENEVSDSPGDEP---SESPYESADETQTEVSVSSKKSERGVTAK------KEYV 669
Query: 143 YCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKC 187
LC + G ++ C+ C FH +C+GL+ +P+G++ C +C
Sbjct: 670 CQLCEKP--GSLLLCEGPCCGA--FHLACLGLSRRPEGRFTCSEC 710
Score = 28.9 bits (63), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 152 GEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKCR 188
G ++ C++ CP FH C+ + P G W+C CR
Sbjct: 841 GSLLCCES--CPAA-FHPDCLNIE-MPDGSWFCNDCR 873
>gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo
sapiens]
Length = 1188
Score = 47.0 bits (110), Expect = 1e-05
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 22/143 (15%)
Query: 74 DKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAK---TSKKKKRSKA------- 123
D +++R+ ++R + ++S+ H D ++ K+KK S K++S+
Sbjct: 29 DPGSAERTAQKRKFPSPPHSSNGHSPQDTSTSPIKKKKKPGLLNSNNKEQSELRHGPFYY 88
Query: 124 -KAEREASPADL-PIDPNEPTYC-LCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKG 180
K P D+ P D YC +C++ G+++ C+ CP +H C+ L +P+G
Sbjct: 89 MKQPLTTDPVDVVPQDGRNDFYCWVCHRE--GQVLCCEL--CP-RVYHAKCLRLTSEPEG 143
Query: 181 KWYCPKCR----GENEKTMDKAL 199
W+CP+C E +T KA+
Sbjct: 144 DWFCPECEKITVAECIETQSKAM 166
>gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo
sapiens]
Length = 1160
Score = 47.0 bits (110), Expect = 1e-05
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 22/143 (15%)
Query: 74 DKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAK---TSKKKKRSKA------- 123
D +++R+ ++R + ++S+ H D ++ K+KK S K++S+
Sbjct: 29 DPGSAERTAQKRKFPSPPHSSNGHSPQDTSTSPIKKKKKPGLLNSNNKEQSELRHGPFYY 88
Query: 124 -KAEREASPADL-PIDPNEPTYC-LCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKG 180
K P D+ P D YC +C++ G+++ C+ CP +H C+ L +P+G
Sbjct: 89 MKQPLTTDPVDVVPQDGRNDFYCWVCHRE--GQVLCCEL--CP-RVYHAKCLRLTSEPEG 143
Query: 181 KWYCPKCR----GENEKTMDKAL 199
W+CP+C E +T KA+
Sbjct: 144 DWFCPECEKITVAECIETQSKAM 166
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 45.8 bits (107), Expect = 3e-05
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 10/66 (15%)
Query: 146 CNQVSYGE-MIGCDNDECPIEWFHFSCVGLNHKP--KGKWYCPKCRGENEKTMDKALEKS 202
CN+ G MIGCD+ + +W+H+ CVG+ P + +W+CPKC K DK K
Sbjct: 871 CNKPDDGSPMIGCDDCD---DWYHWPCVGIMTAPPEEMQWFCPKCA---NKKKDKK-HKK 923
Query: 203 KKERAY 208
+K RA+
Sbjct: 924 RKHRAH 929
Score = 28.9 bits (63), Expect = 3.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 88 ENRENASSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAERE 128
E +E D K++K K K+K+R K K ERE
Sbjct: 691 EEKEKVKEKEKKKDKKEKKKKKEKEKEKKEKEREKEKRERE 731
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 45.4 bits (106), Expect = 3e-05
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 14/164 (8%)
Query: 36 QVDSHVELFEAQQELGDTAG-----NSGKAGADRPKGEAAAQAD-KPNSKRSRRQRNNEN 89
QV V + +A+ + G G K G + KG+ A + ++R++ + +
Sbjct: 232 QVPQPVPIRKAKTKEGKGPGVRKKIKGSKDGKKKGKGKKTAGLKFRFGGISNKRKKGSSS 291
Query: 90 RENASSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYC-LCNQ 148
E+ D D + + + ++ K+SK + +++ + + YC +C Q
Sbjct: 292 EEDEREESDFDSASIHSASVRSECSAALGKKSKRRRKKKRIDDGDGYETDHQDYCEVCQQ 351
Query: 149 VSYGEMIGCDNDECPIEWFHFSCVG--LNHKPKGKWYCPKCRGE 190
GE+I CD CP +H C+ L P+GKW CP C E
Sbjct: 352 G--GEIILCDT--CP-RAYHLVCLDPELEKAPEGKWSCPHCEKE 390
Score = 33.5 bits (75), Expect = 0.13
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 65 PKGEAAAQADKPNSKRSRRQRNNENRENASSNHD-----HDDGASGTPKEKKAKTSKKKK 119
PK + + + K R+++ N E + + D +G+ +P +KK K K KK
Sbjct: 48 PKKKKPKKLKENKCKGKRKKKEGSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDKK 107
Query: 120 RSKAKAEREASPAD 133
KAK +++ D
Sbjct: 108 EKKAKRKKKDEDED 121
Score = 32.3 bits (72), Expect = 0.30
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 152 GEMIGCDNDECPIEWFHFSCVG--LNHKPKGKWYCPKC 187
GE++ CD CP +H C+ L P G+W CP+C
Sbjct: 426 GELLCCD--ACPSS-YHLHCLNPPLPEIPNGEWLCPRC 460
Score = 28.1 bits (61), Expect = 5.6
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 74 DKPNSKRSRRQRNN----ENRENAS--SNHDHDDGASGTPKEKKAKTSKKKKRSKAKAER 127
+K KR +++ +N EN E+ S + D + K+KK K K+KK + K +
Sbjct: 59 NKCKGKRKKKEGSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDE 118
Query: 128 EASPAD 133
+ D
Sbjct: 119 DEDDND 124
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 45.1 bits (105), Expect = 4e-05
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 13/153 (8%)
Query: 58 GKAGADRPKGEAAA-QADK-PNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTS 115
G G R KG + Q+D+ P + ++ + +AS DG T K K+ +
Sbjct: 297 GLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGR---PDGPVRTKKLKRGRPG 353
Query: 116 KKKKRSKAKAEREASPADLPIDPNEPTYC-LCNQVSYGEMIGCDNDECPIEWFHFSCVG- 173
+KKK+ + + YC +C Q GE+I CD CP +H C+
Sbjct: 354 RKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQG--GEIILCDT--CP-RAYHLVCLDP 408
Query: 174 -LNHKPKGKWYCPKCRGENEKTMDKALEKSKKE 205
L+ P+GKW CP C E + K E+ +E
Sbjct: 409 ELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEE 441
Score = 31.6 bits (70), Expect = 0.51
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 94 SSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYC-LCNQVSYG 152
S H +G KE++ + ++ + K E + + YC +C G
Sbjct: 419 SCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEED----------DHMEYCRVCKDG--G 466
Query: 153 EMIGCDNDECPIEWFHFSCVG--LNHKPKGKWYCPKC 187
E++ CD I +H C+ L P G+W CP+C
Sbjct: 467 ELLCCD---ACISSYHIHCLNPPLPDIPNGEWLCPRC 500
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 45.1 bits (105), Expect = 4e-05
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 13/153 (8%)
Query: 58 GKAGADRPKGEAAA-QADK-PNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTS 115
G G R KG + Q+D+ P + ++ + +AS DG T K K+ +
Sbjct: 297 GLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGR---PDGPVRTKKLKRGRPG 353
Query: 116 KKKKRSKAKAEREASPADLPIDPNEPTYC-LCNQVSYGEMIGCDNDECPIEWFHFSCVG- 173
+KKK+ + + YC +C Q GE+I CD CP +H C+
Sbjct: 354 RKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQG--GEIILCDT--CP-RAYHLVCLDP 408
Query: 174 -LNHKPKGKWYCPKCRGENEKTMDKALEKSKKE 205
L+ P+GKW CP C E + K E+ +E
Sbjct: 409 ELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEE 441
Score = 31.6 bits (70), Expect = 0.51
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 94 SSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYC-LCNQVSYG 152
S H +G KE++ + ++ + K E + + YC +C G
Sbjct: 419 SCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEED----------DHMEYCRVCKDG--G 466
Query: 153 EMIGCDNDECPIEWFHFSCVG--LNHKPKGKWYCPKC 187
E++ CD I +H C+ L P G+W CP+C
Sbjct: 467 ELLCCD---ACISSYHIHCLNPPLPDIPNGEWLCPRC 500
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 45.1 bits (105), Expect = 4e-05
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 13/153 (8%)
Query: 58 GKAGADRPKGEAAA-QADK-PNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTS 115
G G R KG + Q+D+ P + ++ + +AS DG T K K+ +
Sbjct: 356 GLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGR---PDGPVRTKKLKRGRPG 412
Query: 116 KKKKRSKAKAEREASPADLPIDPNEPTYC-LCNQVSYGEMIGCDNDECPIEWFHFSCVG- 173
+KKK+ + + YC +C Q GE+I CD CP +H C+
Sbjct: 413 RKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQG--GEIILCDT--CP-RAYHLVCLDP 467
Query: 174 -LNHKPKGKWYCPKCRGENEKTMDKALEKSKKE 205
L+ P+GKW CP C E + K E+ +E
Sbjct: 468 ELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEE 500
Score = 31.6 bits (70), Expect = 0.51
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 94 SSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYC-LCNQVSYG 152
S H +G KE++ + ++ + K E + + YC +C G
Sbjct: 478 SCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEED----------DHMEYCRVCKDG--G 525
Query: 153 EMIGCDNDECPIEWFHFSCVG--LNHKPKGKWYCPKC 187
E++ CD I +H C+ L P G+W CP+C
Sbjct: 526 ELLCCD---ACISSYHIHCLNPPLPDIPNGEWLCPRC 559
>gi|27477095 nuclear receptor binding SET domain protein 1 isoform a
[Homo sapiens]
Length = 2427
Score = 43.9 bits (102), Expect = 1e-04
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 109 EKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFH 168
E+K+K KKK++ K + + E + E C G+++ C CP + +H
Sbjct: 1824 EEKSKKFKKKQQGKRRTQGEITKE------REDECFSCGDA--GQLVSCKKPGCP-KVYH 1874
Query: 169 FSCVGLNHKPKGKWYCP 185
C+ L +P GKW CP
Sbjct: 1875 ADCLNLTKRPAGKWECP 1891
Score = 38.5 bits (88), Expect = 0.004
Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 13/125 (10%)
Query: 74 DKPNSKRSRRQRNNENRENASSNHDHDD---GASGTPKEKKAKTSKKKKRSKAKAEREAS 130
DKP ++ +R + + N D G+ G + TS K+ +
Sbjct: 1197 DKPRKRKRQRHAAAKMQCKKVKNDDSSKEIPGSEGELMPHRTATSPKETVEEGVEHDPGM 1256
Query: 131 PADLPIDPN-------EPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWY 183
PA + + C N GE++ C+ C FH C+GL P+GK+
Sbjct: 1257 PASKKMQGERGGGAALKENVCQ-NCEKLGELLLCEAQCCGA--FHLECLGLTEMPRGKFI 1313
Query: 184 CPKCR 188
C +CR
Sbjct: 1314 CNECR 1318
Score = 31.6 bits (70), Expect = 0.51
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 152 GEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKCR 188
G ++ CD+ CP FH C+ ++ P+G WYC C+
Sbjct: 1448 GSLLCCDS--CPAA-FHRECLNIDI-PEGNWYCNDCK 1480
>gi|19923586 nuclear receptor binding SET domain protein 1 isoform b
[Homo sapiens]
Length = 2696
Score = 43.9 bits (102), Expect = 1e-04
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 109 EKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFH 168
E+K+K KKK++ K + + E + E C G+++ C CP + +H
Sbjct: 2093 EEKSKKFKKKQQGKRRTQGEITKE------REDECFSCGDA--GQLVSCKKPGCP-KVYH 2143
Query: 169 FSCVGLNHKPKGKWYCP 185
C+ L +P GKW CP
Sbjct: 2144 ADCLNLTKRPAGKWECP 2160
Score = 38.5 bits (88), Expect = 0.004
Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 13/125 (10%)
Query: 74 DKPNSKRSRRQRNNENRENASSNHDHDD---GASGTPKEKKAKTSKKKKRSKAKAEREAS 130
DKP ++ +R + + N D G+ G + TS K+ +
Sbjct: 1466 DKPRKRKRQRHAAAKMQCKKVKNDDSSKEIPGSEGELMPHRTATSPKETVEEGVEHDPGM 1525
Query: 131 PADLPIDPN-------EPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWY 183
PA + + C N GE++ C+ C FH C+GL P+GK+
Sbjct: 1526 PASKKMQGERGGGAALKENVCQ-NCEKLGELLLCEAQCCGA--FHLECLGLTEMPRGKFI 1582
Query: 184 CPKCR 188
C +CR
Sbjct: 1583 CNECR 1587
Score = 31.6 bits (70), Expect = 0.51
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 152 GEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKCR 188
G ++ CD+ CP FH C+ ++ P+G WYC C+
Sbjct: 1717 GSLLCCDS--CPAA-FHRECLNIDI-PEGNWYCNDCK 1749
>gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo
sapiens]
Length = 1135
Score = 43.1 bits (100), Expect = 2e-04
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 23/131 (17%)
Query: 74 DKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPAD 133
D +++R+ ++R + ++S+ H D S +P +KK K +K +
Sbjct: 29 DPGSAERTAQKRKFPSPPHSSNGHSPQD-TSTSPIKKKKKPGLLNSNNKEQ--------- 78
Query: 134 LPIDPNEPTYC-LCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKCR---- 188
D YC +C++ G+++ C+ CP +H C+ L +P+G W+CP+C
Sbjct: 79 ---DGRNDFYCWVCHRE--GQVLCCEL--CP-RVYHAKCLRLTSEPEGDWFCPECEKITV 130
Query: 189 GENEKTMDKAL 199
E +T KA+
Sbjct: 131 AECIETQSKAM 141
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.127 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,438,636
Number of Sequences: 37866
Number of extensions: 406425
Number of successful extensions: 4236
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 287
Number of HSP's that attempted gapping in prelim test: 2896
Number of HSP's gapped (non-prelim): 1300
length of query: 210
length of database: 18,247,518
effective HSP length: 98
effective length of query: 112
effective length of database: 14,536,650
effective search space: 1628104800
effective search space used: 1628104800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.