Search of human proteins with 38016907

Search of human proteins with 38016907

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|38016907 stomatin isoform b [Homo sapiens]
         (123 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|38016907 stomatin isoform b [Homo sapiens]                         245   5e-66
gi|38016911 stomatin isoform a [Homo sapiens]                         133   4e-32
gi|221316744 stomatin-like 3 isoform 2 [Homo sapiens]                  97   2e-21
gi|21686995 stomatin-like 3 isoform 1 [Homo sapiens]                   97   2e-21
gi|7657615 podocin [Homo sapiens]                                      64   4e-11
gi|30578410 source of immunodominant MHC-associated peptides [Ho...    33   0.071
gi|61656205 olfactory receptor, family 8, subfamily U, member 8 ...    30   0.46 
gi|20149563 stomatin (EPB72)-like 1 [Homo sapiens]                     29   0.79 
gi|52353304 olfactory receptor, family 8, subfamily U, member 1 ...    28   1.8  
gi|61656212 olfactory receptor, family 8, subfamily U, member 9 ...    28   1.8  
gi|109134347 NY-REN-58 antigen [Homo sapiens]                          27   3.0  
gi|109134355 NY-REN-58 antigen [Homo sapiens]                          27   3.0  
gi|52218842 olfactory receptor, family 10, subfamily R, member 2...    27   3.0  
gi|6005854 prohibitin 2 isoform 2 [Homo sapiens]                       27   3.9  
gi|221307584 prohibitin 2 isoform 1 [Homo sapiens]                     27   3.9  
gi|52317100 olfactory receptor, family 5, subfamily A, member 1 ...    27   5.1  
gi|145279179 olfactory receptor, family 8, subfamily K, member 5...    26   6.7  

>gi|38016907 stomatin isoform b [Homo sapiens]
          Length = 123

 Score =  245 bits (626), Expect = 5e-66
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MAEKRHTRDSEAQRLPDSFKDSPSKGLGPCGWILVAFSFLFTVITFPISIWMCIKVIAAE 60
           MAEKRHTRDSEAQRLPDSFKDSPSKGLGPCGWILVAFSFLFTVITFPISIWMCIKVIAAE
Sbjct: 1   MAEKRHTRDSEAQRLPDSFKDSPSKGLGPCGWILVAFSFLFTVITFPISIWMCIKVIAAE 60

Query: 61  GEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGIIGAKHS 120
           GEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGIIGAKHS
Sbjct: 61  GEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGIIGAKHS 120

Query: 121 HLG 123
           HLG
Sbjct: 121 HLG 123


>gi|38016911 stomatin isoform a [Homo sapiens]
          Length = 288

 Score =  133 bits (334), Expect = 4e-32
 Identities = 69/69 (100%), Positives = 69/69 (100%)

Query: 55  KVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGI 114
           KVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGI
Sbjct: 220 KVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGI 279

Query: 115 IGAKHSHLG 123
           IGAKHSHLG
Sbjct: 280 IGAKHSHLG 288



 Score =  121 bits (304), Expect = 1e-28
 Identities = 56/57 (98%), Positives = 57/57 (100%)

Query: 1  MAEKRHTRDSEAQRLPDSFKDSPSKGLGPCGWILVAFSFLFTVITFPISIWMCIKVI 57
          MAEKRHTRDSEAQRLPDSFKDSPSKGLGPCGWILVAFSFLFTVITFPISIWMCIK+I
Sbjct: 1  MAEKRHTRDSEAQRLPDSFKDSPSKGLGPCGWILVAFSFLFTVITFPISIWMCIKII 57


>gi|221316744 stomatin-like 3 isoform 2 [Homo sapiens]
          Length = 282

 Score = 97.4 bits (241), Expect = 2e-21
 Identities = 47/67 (70%), Positives = 59/67 (88%)

Query: 55  KVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGI 114
           KV+AAEGEMNAS++LK ASMV+ ESP ALQLRYLQTL+T+A EKNSTIVFPLP+++L+GI
Sbjct: 208 KVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTLSTVATEKNSTIVFPLPMNILEGI 267

Query: 115 IGAKHSH 121
            G  + +
Sbjct: 268 GGVSYDN 274



 Score = 57.0 bits (136), Expect = 4e-09
 Identities = 23/34 (67%), Positives = 28/34 (82%)

Query: 24 SKGLGPCGWILVAFSFLFTVITFPISIWMCIKVI 57
          +K LG CGWIL + SFL  +ITFPISIWMC+K+I
Sbjct: 12 NKRLGVCGWILFSLSFLLVIITFPISIWMCLKII 45


>gi|21686995 stomatin-like 3 isoform 1 [Homo sapiens]
          Length = 291

 Score = 97.4 bits (241), Expect = 2e-21
 Identities = 47/67 (70%), Positives = 59/67 (88%)

Query: 55  KVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGI 114
           KV+AAEGEMNAS++LK ASMV+ ESP ALQLRYLQTL+T+A EKNSTIVFPLP+++L+GI
Sbjct: 217 KVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTLSTVATEKNSTIVFPLPMNILEGI 276

Query: 115 IGAKHSH 121
            G  + +
Sbjct: 277 GGVSYDN 283



 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 24/41 (58%), Positives = 31/41 (75%)

Query: 17 DSFKDSPSKGLGPCGWILVAFSFLFTVITFPISIWMCIKVI 57
          ++F    +K LG CGWIL + SFL  +ITFPISIWMC+K+I
Sbjct: 14 ENFVGVNNKRLGVCGWILFSLSFLLVIITFPISIWMCLKII 54


>gi|7657615 podocin [Homo sapiens]
          Length = 383

 Score = 63.5 bits (153), Expect = 4e-11
 Identities = 29/58 (50%), Positives = 45/58 (77%)

Query: 54  IKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDML 111
           +++IAAE E  AS +L+ A+ +++ +PAA+QLRYL TL +++ EK ST+V PLP D+L
Sbjct: 290 VRMIAAEAEKAASESLRMAAEILSGTPAAVQLRYLHTLQSLSTEKPSTVVLPLPFDLL 347



 Score = 52.4 bits (124), Expect = 9e-08
 Identities = 20/34 (58%), Positives = 25/34 (73%)

Query: 24  SKGLGPCGWILVAFSFLFTVITFPISIWMCIKVI 57
           S GLG C W+LV  S LF ++TFP SIW C+KV+
Sbjct: 95  SSGLGACEWLLVLISLLFIIMTFPFSIWFCVKVV 128


>gi|30578410 source of immunodominant MHC-associated peptides [Homo
           sapiens]
          Length = 826

 Score = 32.7 bits (73), Expect = 0.071
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 29  PCGWILVAFSFLFTVITFPISIWMCIKVIAAEGEMNASRALKEASMVITESPAALQLRYL 88
           P  W+   F     V TFP  +W CIK I  E    A  A+           A + +R +
Sbjct: 408 PTTWVSFFFDLHILVCTFPAGLWFCIKNINDERVFVALYAISAVYF------AGVMVRLM 461

Query: 89  QTLTTI 94
            TLT +
Sbjct: 462 LTLTPV 467


>gi|61656205 olfactory receptor, family 8, subfamily U, member 8
           [Homo sapiens]
          Length = 319

 Score = 30.0 bits (66), Expect = 0.46
 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 30  CGWILVAFSFLFTVITFPISIWMCIKVIAAEGEMNASRALKEASMVITESPAALQLRYLQ 89
           C  I    S L   +++   I+  +++ +AEG   A        + +T     L   YLQ
Sbjct: 202 CAGITFICSVLIVFVSYMFIIFAILRMSSAEGRRKAFSTCSSHMLAVTIFYGTLIFMYLQ 261

Query: 90  TLT--TIAAEKNSTIVFPLPIDMLQGII 115
             +  ++ A+K +++ + + I ML  +I
Sbjct: 262 PSSSHSLDADKMASVFYTVIIPMLNPLI 289


>gi|20149563 stomatin (EPB72)-like 1 [Homo sapiens]
          Length = 398

 Score = 29.3 bits (64), Expect = 0.79
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 30 CGWILVAFSFLFTVITFPISIWMCIKVI 57
          C  ++    FL  ++TFPIS W  +K++
Sbjct: 55 CHGLISFLGFLLLLVTFPISGWFALKIV 82


>gi|52353304 olfactory receptor, family 8, subfamily U, member 1
           [Homo sapiens]
          Length = 309

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 30  CGWILVAFSFLFTVITFPISIWMCIKVIAAEGEMNASRALKEASMVITESPAALQLRYLQ 89
           C  I+   S L   +++   I   +++ +AEG   A        + +T     L   YLQ
Sbjct: 202 CAGIMFISSLLIVFVSYMFIISAILRMHSAEGRQKAFSTCGSHMLAVTIFYGTLIFMYLQ 261

Query: 90  TLTTIA--AEKNSTIVFPLPIDMLQGII 115
             ++ A   +K +++ + + I ML  +I
Sbjct: 262 PSSSHALDTDKMASVFYTVIIPMLNPLI 289


>gi|61656212 olfactory receptor, family 8, subfamily U, member 9
           [Homo sapiens]
          Length = 309

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 30  CGWILVAFSFLFTVITFPISIWMCIKVIAAEGEMNASRALKEASMVITESPAALQLRYLQ 89
           C  I+   S L   +++   I   +++ +AEG   A        + +T     L   YLQ
Sbjct: 202 CAGIMFISSLLIVFVSYMFIISAILRMHSAEGRQKAFSTCGSHMLAVTIFYGTLIFMYLQ 261

Query: 90  TLTTIA--AEKNSTIVFPLPIDMLQGII 115
             ++ A   +K +++ + + I ML  +I
Sbjct: 262 PSSSHALDTDKMASVFYTVIIPMLNPLI 289


>gi|109134347 NY-REN-58 antigen [Homo sapiens]
          Length = 701

 Score = 27.3 bits (59), Expect = 3.0
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 50  IWMCIKVIAAEGEMNASRALKEASMVITESPAALQLRYL----QTLTTIAAEKNS 100
           +++C K+   E E+   +A KE S    E+   +Q+R L     T+ ++ AEK S
Sbjct: 218 VYLCQKLKGLEAEVAELKAEKENSEAQVENAQRIQVRQLAEMQATVRSLEAEKQS 272


>gi|109134355 NY-REN-58 antigen [Homo sapiens]
          Length = 701

 Score = 27.3 bits (59), Expect = 3.0
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 50  IWMCIKVIAAEGEMNASRALKEASMVITESPAALQLRYL----QTLTTIAAEKNS 100
           +++C K+   E E+   +A KE S    E+   +Q+R L     T+ ++ AEK S
Sbjct: 218 VYLCQKLKGLEAEVAELKAEKENSEAQVENAQRIQVRQLAEMQATVRSLEAEKQS 272


>gi|52218842 olfactory receptor, family 10, subfamily R, member 2
           [Homo sapiens]
          Length = 335

 Score = 27.3 bits (59), Expect = 3.0
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 30  CGWILVAFSFLFTVITFPISIWMCIKVIAAEGEMNA-SRALKEASMVITESPAALQLRYL 88
           CG +++   FLF  +++   +   +K+ +AEG   A S      S+VI     A    YL
Sbjct: 222 CGVLVLVVPFLFICVSYLCILRTILKIPSAEGRRKAFSTCASHLSVVIVHYGCA-SFIYL 280

Query: 89  QTLTTIAAEKNS------TIVFPL 106
           +      + K+       TIV PL
Sbjct: 281 RPTANYVSNKDRLVTVTYTIVTPL 304


>gi|6005854 prohibitin 2 isoform 2 [Homo sapiens]
          Length = 299

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 55  KVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIA 95
           K++ AEGE  A++ L EA   ++++P  ++LR ++    I+
Sbjct: 224 KIVQAEGEAEAAKMLGEA---LSKNPGYIKLRKIRAAQNIS 261


>gi|221307584 prohibitin 2 isoform 1 [Homo sapiens]
          Length = 299

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 55  KVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIA 95
           K++ AEGE  A++ L EA   ++++P  ++LR ++    I+
Sbjct: 224 KIVQAEGEAEAAKMLGEA---LSKNPGYIKLRKIRAAQNIS 261


>gi|52317100 olfactory receptor, family 5, subfamily A, member 1
           [Homo sapiens]
          Length = 315

 Score = 26.6 bits (57), Expect = 5.1
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 38  SFLFTVITFPISIWMCIKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTT--IA 95
           SFL  +I++   +   +K+ +AEG   A        MV+T         YL+  ++  + 
Sbjct: 213 SFLQLLISYGYIVSAVLKIPSAEGRWKACNTCASHLMVVTLLFGTALFVYLRPSSSYLLG 272

Query: 96  AEKNSTIVFPLPIDMLQGII 115
            +K  ++ + L I ML  +I
Sbjct: 273 RDKVVSVFYSLVIPMLNPLI 292


>gi|145279179 olfactory receptor, family 8, subfamily K, member 5
           [Homo sapiens]
          Length = 307

 Score = 26.2 bits (56), Expect = 6.7
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 38  SFLFTVITFPISIWMCIKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTT--IA 95
           SFL  ++++ + +    ++ +AEG   A         V+     +L   Y+Q  +T    
Sbjct: 210 SFLIVLVSYMLILLAICQMHSAEGRKKAFSTCGSHLTVVVVFYGSLLFMYMQPNSTHFFD 269

Query: 96  AEKNSTIVFPLPIDMLQGII 115
            +K +++ + L I ML  +I
Sbjct: 270 TDKMASVFYTLVIPMLNPLI 289


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,254,301
Number of Sequences: 37866
Number of extensions: 141889
Number of successful extensions: 359
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 21
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.