Guide to the Human Genome
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Name: CLEC2D Sequence: fasta or formatted (194aa) NCBI GI: 52426782
Description:

osteoclast inhibitory lectin isoform 2

Referenced in:

Bone and Related Tissues
Lectin Families

Other entries for this name:
alt prot [191aa] osteoclast inhibitory lectin isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         12           2
 C cysteine            4.1          8           1
 D aspartate           4.6          9           2
 E glutamate           5.7         11           1
 F phenylalanine       5.2         10           2
 G glycine             4.6          9           1
 H histidine           2.6          5           1
 I isoleucine          5.2         10           2
 K lysine              4.6          9           1
 L leucine             8.2         16           2
 M methionine          3.1          6           1
 N asparagine          4.6          9           2
 P proline             5.7         11           1
 Q glutamine           5.7         11           1
 R arginine            5.7         11           2
 S serine              8.8         17           2
 T threonine           3.6          7           1
 V valine              6.2         12           1
 W tryptophan          3.6          7           1
 Y tyrosine            2.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   osteoclast inhibitory lectin isoform 2 
CLEC2D                0.796   osteoclast inhibitory lectin isoform 1 
CLEC2A                0.225   C-type lectin domain family 2, member A 
CD69                  0.214   CD69 molecule 
CLEC2B                0.186   C-type lectin, superfamily member 2 
ASGR1                 0.132   asialoglycoprotein receptor 1 
ASGR2                 0.127   asialoglycoprotein receptor 2 isoform c 
ASGR2                 0.127   asialoglycoprotein receptor 2 isoform b 
ASGR2                 0.127   asialoglycoprotein receptor 2 isoform a 
CLEC10A               0.127   C-type lectin, superfamily member 14 isoform 2 [Homo...
ASGR2                 0.127   asialoglycoprotein receptor 2 isoform a 
CLEC2L                0.127   C-type lectin domain family 2, member L 
CLEC10A               0.121   C-type lectin, superfamily member 14 isoform 1 [Homo...
CLEC7A                0.114   dendritic cell-associated C-type lectin 1 isoform b ...
FCER2                 0.111   Fc fragment of IgE, low affinity II, receptor for (C...
KLRD1                 0.109   killer cell lectin-like receptor subfamily D, membe...
KLRD1                 0.109   killer cell lectin-like receptor subfamily D, member ...
CLEC4E                0.109   C-type lectin domain family 4, member E 
KLRG2                 0.103   killer cell lectin-like receptor subfamily G, member...
KLRD1                 0.103   killer cell lectin-like receptor subfamily D, member ...
CLEC7A                0.101   dendritic cell-associated C-type lectin 1 isoform e ...
CLEC7A                0.101   dendritic cell-associated C-type lectin 1 isoform a ...
KLRG1                 0.096   killer cell lectin-like receptor subfamily G, member...
KLRK1                 0.096   NKG2-D type II integral membrane protein 
CLEC4C                0.093   C-type lectin domain family 4, member C isoform 2 [H...
CLEC4C                0.093   C-type lectin domain family 4, member C isoform 1 [H...
CLEC9A                0.090   C-type lectin domain family 9, member A 
OLR1                  0.088   oxidized low density lipoprotein (lectin-like) recept...
KLRC2                 0.085   killer cell lectin-like receptor subfamily C, member...
COLEC12               0.085   collectin sub-family member 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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