Search of human proteins with 37574731

Search of human proteins with 37574731

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|37574731 boule isoform 1 [Homo sapiens]
         (295 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|37574731 boule isoform 1 [Homo sapiens]                            613   e-176
gi|14719414 boule isoform 2 [Homo sapiens]                            589   e-169
gi|25121978 deleted in azoospermia-like [Homo sapiens]                116   3e-26
gi|54292107 deleted in azoospermia 2 isoform 3 [Homo sapiens]          99   6e-21
gi|189181654 deleted in azoospermia [Homo sapiens]                     98   1e-20
gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens]          98   1e-20
gi|32698734 deleted in azoospermia 4 isoform 2 [Homo sapiens]          98   1e-20
gi|11036660 deleted in azoospermia 2 isoform 1 [Homo sapiens]          98   1e-20
gi|54292110 deleted in azoospermia 3 [Homo sapiens]                    98   1e-20
gi|54292105 deleted in azoospermia 2 isoform 2 [Homo sapiens]          98   1e-20
gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens]       77   2e-14
gi|221139802 RNA binding motif protein 24 isoform 1 [Homo sapiens]     65   5e-11
gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens]       64   2e-10
gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]       62   6e-10
gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens]        62   6e-10
gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens]        62   6e-10
gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens]        62   6e-10
gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]        62   6e-10
gi|4502847 cold inducible RNA binding protein [Homo sapiens]           61   1e-09
gi|133925803 RNA binding motif protein 9 isoform 5 [Homo sapiens]      60   3e-09
gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens]        60   3e-09
gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens]      59   4e-09
gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens]      59   4e-09
gi|133925799 RNA binding motif protein 9 isoform 3 [Homo sapiens]      59   4e-09
gi|72534682 RNA binding motif protein 9 isoform 1 [Homo sapiens]       59   4e-09
gi|34303937 RNA binding motif protein, Y-linked, family 1, membe...    59   4e-09
gi|56090529 RNA binding motif protein, Y-linked, family 1, membe...    59   4e-09
gi|34577107 RNA-binding region containing protein 1 isoform a [H...    59   5e-09
gi|4826974 RNA binding motif protein, Y-linked, family 1, member...    59   5e-09
gi|56090527 RNA binding motif protein, Y-linked, family 1, membe...    59   5e-09

>gi|37574731 boule isoform 1 [Homo sapiens]
          Length = 295

 Score =  613 bits (1581), Expect = e-176
 Identities = 295/295 (100%), Positives = 295/295 (100%)

Query: 1   METESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESD 60
           METESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESD
Sbjct: 1   METESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESD 60

Query: 61  LRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA 120
           LRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA
Sbjct: 61  LRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA 120

Query: 121 IRKQQVGIPRSSIMPAAGTMYLTTSTGYPYTYHNGVAYFHTPEVTSVPPPWPSRSVCSSP 180
           IRKQQVGIPRSSIMPAAGTMYLTTSTGYPYTYHNGVAYFHTPEVTSVPPPWPSRSVCSSP
Sbjct: 121 IRKQQVGIPRSSIMPAAGTMYLTTSTGYPYTYHNGVAYFHTPEVTSVPPPWPSRSVCSSP 180

Query: 181 VMVAQPIYQQPAYHYQATTQYLPGQWQWSVPQPSASSAPFLYLQPSEVIYQPVEIAQDGG 240
           VMVAQPIYQQPAYHYQATTQYLPGQWQWSVPQPSASSAPFLYLQPSEVIYQPVEIAQDGG
Sbjct: 181 VMVAQPIYQQPAYHYQATTQYLPGQWQWSVPQPSASSAPFLYLQPSEVIYQPVEIAQDGG 240

Query: 241 CVPPPLSLMETSVPEPYSDHGVQATYHQVYAPSAITMPAPVMQPEPIKTVWSIHY 295
           CVPPPLSLMETSVPEPYSDHGVQATYHQVYAPSAITMPAPVMQPEPIKTVWSIHY
Sbjct: 241 CVPPPLSLMETSVPEPYSDHGVQATYHQVYAPSAITMPAPVMQPEPIKTVWSIHY 295


>gi|14719414 boule isoform 2 [Homo sapiens]
          Length = 283

 Score =  589 bits (1519), Expect = e-169
 Identities = 283/283 (100%), Positives = 283/283 (100%)

Query: 13  MQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVK 72
           MQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVK
Sbjct: 1   MQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVK 60

Query: 73  EVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQVGIPRSS 132
           EVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQVGIPRSS
Sbjct: 61  EVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQVGIPRSS 120

Query: 133 IMPAAGTMYLTTSTGYPYTYHNGVAYFHTPEVTSVPPPWPSRSVCSSPVMVAQPIYQQPA 192
           IMPAAGTMYLTTSTGYPYTYHNGVAYFHTPEVTSVPPPWPSRSVCSSPVMVAQPIYQQPA
Sbjct: 121 IMPAAGTMYLTTSTGYPYTYHNGVAYFHTPEVTSVPPPWPSRSVCSSPVMVAQPIYQQPA 180

Query: 193 YHYQATTQYLPGQWQWSVPQPSASSAPFLYLQPSEVIYQPVEIAQDGGCVPPPLSLMETS 252
           YHYQATTQYLPGQWQWSVPQPSASSAPFLYLQPSEVIYQPVEIAQDGGCVPPPLSLMETS
Sbjct: 181 YHYQATTQYLPGQWQWSVPQPSASSAPFLYLQPSEVIYQPVEIAQDGGCVPPPLSLMETS 240

Query: 253 VPEPYSDHGVQATYHQVYAPSAITMPAPVMQPEPIKTVWSIHY 295
           VPEPYSDHGVQATYHQVYAPSAITMPAPVMQPEPIKTVWSIHY
Sbjct: 241 VPEPYSDHGVQATYHQVYAPSAITMPAPVMQPEPIKTVWSIHY 283


>gi|25121978 deleted in azoospermia-like [Homo sapiens]
          Length = 295

 Score =  116 bits (290), Expect = 3e-26
 Identities = 81/223 (36%), Positives = 112/223 (50%), Gaps = 27/223 (12%)

Query: 40  GTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQ 99
           G ++PN +FVGGID + +E+++R FF++YGSVKEVKI+ DR GVSKGYGFV+F    D Q
Sbjct: 35  GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQ 94

Query: 100 KILQEAEKLNYKDKKLNIGPAIRKQQVGIPRSSIMPAAGTMYLTTSTGYPYTYHNGVAYF 159
           KI++   ++N+  KKL +GPAIRKQ +        P              +T  N   Y 
Sbjct: 95  KIVE--SQINFHGKKLKLGPAIRKQNLCAYHVQPRPLVFNHPPPPQFQNVWTNPNTETYM 152

Query: 160 HTPEVTSVP--------PPWPSRSVCSSPVMVAQPIYQQPAYHYQATTQYLPGQWQWSVP 211
             P  T  P        P +P     +SPV V    YQ P Y+YQ   Q+  G+ +  V 
Sbjct: 153 Q-PTTTMNPITQYVQAYPTYP-----NSPVQVITG-YQLPVYNYQMPPQWPVGEQRSYVV 205

Query: 212 QPSASSAPFLYLQPSEVIYQPVEIAQDGGCVPPPLSLMETSVP 254
            P+ S+          V Y   E+      VP   S+ E + P
Sbjct: 206 PPAYSA----------VNYHCNEVDPGAEVVPNECSVHEATPP 238


>gi|54292107 deleted in azoospermia 2 isoform 3 [Homo sapiens]
          Length = 366

 Score = 98.6 bits (244), Expect = 6e-21
 Identities = 71/199 (35%), Positives = 98/199 (49%), Gaps = 39/199 (19%)

Query: 40  GTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQ 99
           G ++PN +FVGGID + +E+++   F +YGSVKEVKI+ +R GVSKGYGFV+F    D Q
Sbjct: 35  GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 94

Query: 100 KILQEAEKLNYKDKKLNIGPAIRKQQVGI----PRSSIM--------------PAAGTMY 141
           KI+    ++++  KKL +GPAIRKQ++      PR  ++              P   T  
Sbjct: 95  KIV--GSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPPPQFQNVWRNPNTETYL 152

Query: 142 LTTSTGYPYTYHNGV--AYFHTP--EVTSVP---------PPWPSRSVCSSPVMVAQPIY 188
               T  P T H     AY H+P   +T            P +P      SP  V    Y
Sbjct: 153 QPQITPNPVTQHVQAYSAYPHSPGQVITGCQLLVYNYQEYPTYP-----DSPFQVTTG-Y 206

Query: 189 QQPAYHYQATTQYLPGQWQ 207
           Q P Y+YQ    Y    +Q
Sbjct: 207 QLPVYNYQPFPAYPSSPFQ 225


>gi|189181654 deleted in azoospermia [Homo sapiens]
          Length = 744

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 45/87 (51%), Positives = 65/87 (74%), Gaps = 2/87 (2%)

Query: 40  GTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQ 99
           G ++PN +FVGGID + +E+++   F +YGSVKEVKI+ +R GVSKGYGFV+F    D Q
Sbjct: 35  GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 94

Query: 100 KILQEAEKLNYKDKKLNIGPAIRKQQV 126
           KI+    ++++  KKL +GPAIRKQ++
Sbjct: 95  KIV--GSQIHFHGKKLKLGPAIRKQKL 119



 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 45/87 (51%), Positives = 65/87 (74%), Gaps = 2/87 (2%)

Query: 40  GTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQ 99
           G ++PN +FVGGID + +E+++   F +YGSVKEVKI+ +R GVSKGYGFV+F    D Q
Sbjct: 200 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 259

Query: 100 KILQEAEKLNYKDKKLNIGPAIRKQQV 126
           KI+    ++++  KKL +GPAIRKQ++
Sbjct: 260 KIV--GSQIHFHGKKLKLGPAIRKQKL 284



 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 45/87 (51%), Positives = 65/87 (74%), Gaps = 2/87 (2%)

Query: 40  GTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQ 99
           G ++PN +FVGGID + +E+++   F +YGSVKEVKI+ +R GVSKGYGFV+F    D Q
Sbjct: 365 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 424

Query: 100 KILQEAEKLNYKDKKLNIGPAIRKQQV 126
           KI+    ++++  KKL +GPAIRKQ++
Sbjct: 425 KIV--GSQIHFHGKKLKLGPAIRKQKL 449


>gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens]
          Length = 579

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 45/87 (51%), Positives = 65/87 (74%), Gaps = 2/87 (2%)

Query: 40  GTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQ 99
           G ++PN +FVGGID + +E+++   F +YGSVKEVKI+ +R GVSKGYGFV+F    D Q
Sbjct: 35  GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 94

Query: 100 KILQEAEKLNYKDKKLNIGPAIRKQQV 126
           KI+    ++++  KKL +GPAIRKQ++
Sbjct: 95  KIV--GSQIHFHGKKLKLGPAIRKQKL 119



 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 45/87 (51%), Positives = 65/87 (74%), Gaps = 2/87 (2%)

Query: 40  GTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQ 99
           G ++PN +FVGGID + +E+++   F +YGSVKEVKI+ +R GVSKGYGFV+F    D Q
Sbjct: 200 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 259

Query: 100 KILQEAEKLNYKDKKLNIGPAIRKQQV 126
           KI+    ++++  KKL +GPAIRKQ++
Sbjct: 260 KIV--GSQIHFHGKKLKLGPAIRKQKL 284


>gi|32698734 deleted in azoospermia 4 isoform 2 [Homo sapiens]
          Length = 390

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 45/87 (51%), Positives = 65/87 (74%), Gaps = 2/87 (2%)

Query: 40  GTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQ 99
           G ++PN +FVGGID + +E+++   F +YGSVKEVKI+ +R GVSKGYGFV+F    D Q
Sbjct: 35  GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 94

Query: 100 KILQEAEKLNYKDKKLNIGPAIRKQQV 126
           KI+    ++++  KKL +GPAIRKQ++
Sbjct: 95  KIV--GSQIHFHGKKLKLGPAIRKQKL 119


>gi|11036660 deleted in azoospermia 2 isoform 1 [Homo sapiens]
          Length = 558

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 45/87 (51%), Positives = 65/87 (74%), Gaps = 2/87 (2%)

Query: 40  GTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQ 99
           G ++PN +FVGGID + +E+++   F +YGSVKEVKI+ +R GVSKGYGFV+F    D Q
Sbjct: 35  GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 94

Query: 100 KILQEAEKLNYKDKKLNIGPAIRKQQV 126
           KI+    ++++  KKL +GPAIRKQ++
Sbjct: 95  KIV--GSQIHFHGKKLKLGPAIRKQKL 119


>gi|54292110 deleted in azoospermia 3 [Homo sapiens]
          Length = 438

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 45/87 (51%), Positives = 65/87 (74%), Gaps = 2/87 (2%)

Query: 40  GTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQ 99
           G ++PN +FVGGID + +E+++   F +YGSVKEVKI+ +R GVSKGYGFV+F    D Q
Sbjct: 35  GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 94

Query: 100 KILQEAEKLNYKDKKLNIGPAIRKQQV 126
           KI+    ++++  KKL +GPAIRKQ++
Sbjct: 95  KIV--GSQIHFHGKKLKLGPAIRKQKL 119


>gi|54292105 deleted in azoospermia 2 isoform 2 [Homo sapiens]
          Length = 534

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 45/87 (51%), Positives = 65/87 (74%), Gaps = 2/87 (2%)

Query: 40  GTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQ 99
           G ++PN +FVGGID + +E+++   F +YGSVKEVKI+ +R GVSKGYGFV+F    D Q
Sbjct: 35  GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 94

Query: 100 KILQEAEKLNYKDKKLNIGPAIRKQQV 126
           KI+    ++++  KKL +GPAIRKQ++
Sbjct: 95  KIV--GSQIHFHGKKLKLGPAIRKQKL 119


>gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens]
          Length = 312

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 65/241 (26%), Positives = 107/241 (44%), Gaps = 50/241 (20%)

Query: 3   TESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLR 62
           T++ PQT    QTDS         P+  ++PT   +     P R+ V  I F+  + DLR
Sbjct: 70  TQTVPQTDEAAQTDS--------QPLHPSDPTEKQQ-----PKRLHVSNIPFRFRDPDLR 116

Query: 63  KFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA-- 120
           + F Q+G + +V+I+ +  G SKG+GFVTFET  DA +  ++      + +K+ +  A  
Sbjct: 117 QMFGQFGKILDVEIIFNERG-SKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATA 175

Query: 121 --IRKQQVGIPRSS---IMPAAGTMY---LTTSTGYPY-TYHNGVAY------------F 159
             +  ++ G P ++   + P  G +Y       TG+PY T    VAY            +
Sbjct: 176 RVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVY 235

Query: 160 HTPEVTSVPPPWPSRSVCSSPVMVAQPIYQQPAYHYQATTQYLPGQWQWSVPQPSASSAP 219
           +T      PPP P+             +YQ   Y      +   G   +   QP+A++A 
Sbjct: 236 NTFRAAPPPPPIPTYGAV---------VYQDGFY----GAEIYGGYAAYRYAQPAAAAAA 282

Query: 220 F 220
           +
Sbjct: 283 Y 283


>gi|221139802 RNA binding motif protein 24 isoform 1 [Homo sapiens]
          Length = 236

 Score = 65.5 bits (158), Expect = 5e-11
 Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 29/199 (14%)

Query: 46  RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 104
           +IFVGG+ + T ++ LRK+F  +G ++E  ++ DR  G S+GYGFVT   +  A++  ++
Sbjct: 12  KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query: 105 AEKLNYKDKKLNIG-----------------------PAIRKQQVGIPRSSIMPAAGTMY 141
              +    +K N+                        PA+ ++  GIP   + P A   +
Sbjct: 72  PNPI-IDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQA---F 127

Query: 142 LTTSTGYPYTYHNGVAYFHTPEVTSVPPPWPSRSVCSSPVMVAQPIYQQPAYHYQATTQY 201
           +      P+      A   TP +      +   S  ++    A    Q P     A   Y
Sbjct: 128 VQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQYPYAASPAAAGY 187

Query: 202 L-PGQWQWSVPQPSASSAP 219
           +  G + ++V QP  ++AP
Sbjct: 188 VTAGGYGYAVQQPITAAAP 206


>gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens]
          Length = 370

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 23/179 (12%)

Query: 2   ETESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDL 61
           +T SG  T    QTD  +P+       P  N  +  +     P R+ V  I F+  + DL
Sbjct: 83  QTVSGTAT----QTDDAAPTDGQPQTQPSENTENKSQ-----PKRLHVSNIPFRFRDPDL 133

Query: 62  RKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAI 121
           R+ F Q+G + +V+I+ +  G SKG+GFVTFE   DA +  ++      + +K+ +  A 
Sbjct: 134 RQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 192

Query: 122 RKQQVGIPRSSIMPAAGTMYLTTSTGYPYTYHNGVAYFHTPEVTSVPP-PWPSRSVCSS 179
            +  V   + ++ P      L    G  Y          +PE  +VP  P+P+ +  ++
Sbjct: 193 AR--VMTNKKTVNPYTNGWKLNPVVGAVY----------SPEFYAVPGFPYPAATAAAA 239


>gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
          Length = 397

 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)

Query: 2   ETESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDL 61
           +T SG  T    QTD  +P+       P  N  +  +     P R+ V  I F+  + DL
Sbjct: 83  QTVSGTAT----QTDDAAPTDGQPQTQPSENTENKSQ-----PKRLHVSNIPFRFRDPDL 133

Query: 62  RKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA 120
           R+ F Q+G + +V+I+ +  G SKG+GFVTFE   DA +  ++      + +K+ +  A
Sbjct: 134 RQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 191


>gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens]
          Length = 395

 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)

Query: 2   ETESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDL 61
           +T SG  T    QTD  +P+       P  N  +  +     P R+ V  I F+  + DL
Sbjct: 103 QTVSGTAT----QTDDAAPTDGQPQTQPSENTENKSQ-----PKRLHVSNIPFRFRDPDL 153

Query: 62  RKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA 120
           R+ F Q+G + +V+I+ +  G SKG+GFVTFE   DA +  ++      + +K+ +  A
Sbjct: 154 RQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 211


>gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens]
          Length = 392

 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)

Query: 2   ETESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDL 61
           +T SG  T    QTD  +P+       P  N  +  +     P R+ V  I F+  + DL
Sbjct: 103 QTVSGTAT----QTDDAAPTDGQPQTQPSENTENKSQ-----PKRLHVSNIPFRFRDPDL 153

Query: 62  RKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA 120
           R+ F Q+G + +V+I+ +  G SKG+GFVTFE   DA +  ++      + +K+ +  A
Sbjct: 154 RQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 211


>gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens]
          Length = 418

 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)

Query: 2   ETESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDL 61
           +T SG  T    QTD  +P+       P  N  +  +     P R+ V  I F+  + DL
Sbjct: 103 QTVSGTAT----QTDDAAPTDGQPQTQPSENTENKSQ-----PKRLHVSNIPFRFRDPDL 153

Query: 62  RKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA 120
           R+ F Q+G + +V+I+ +  G SKG+GFVTFE   DA +  ++      + +K+ +  A
Sbjct: 154 RQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 211


>gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
          Length = 397

 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)

Query: 2   ETESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDL 61
           +T SG  T    QTD  +P+       P  N  +  +     P R+ V  I F+  + DL
Sbjct: 83  QTVSGTAT----QTDDAAPTDGQPQTQPSENTENKSQ-----PKRLHVSNIPFRFRDPDL 133

Query: 62  RKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA 120
           R+ F Q+G + +V+I+ +  G SKG+GFVTFE   DA +  ++      + +K+ +  A
Sbjct: 134 RQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 191


>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
          Length = 172

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 46  RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 104
           ++FVGG+ F TNE  L + FS+YG + EV +V DR    S+G+GFVTFE  +DA+  +  
Sbjct: 7   KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 105 AEKLNYKDKKLNIGPA 120
               +   +++ +  A
Sbjct: 67  MNGKSVDGRQIRVDQA 82


>gi|133925803 RNA binding motif protein 9 isoform 5 [Homo sapiens]
          Length = 451

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 19/149 (12%)

Query: 2   ETESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDL 61
           +TE G QT  Q      S +    S                 P R+ V  I F+  + DL
Sbjct: 155 QTEGGAQTDGQQSQTQSSENSESKST----------------PKRLHVSNIPFRFRDPDL 198

Query: 62  RKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAI 121
           R+ F Q+G + +V+I+ +  G SKG+GFVTFE   DA +  ++      + +K+ +  A 
Sbjct: 199 RQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 257

Query: 122 RKQQVGIPRSSIMPAAGTMYLTTSTGYPY 150
            +  V   +  + P A    L+   G  Y
Sbjct: 258 AR--VMTNKKMVTPYANGWKLSPVVGAVY 284


>gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens]
          Length = 367

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 19/149 (12%)

Query: 2   ETESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDL 61
           +TE G QT  Q      S +    S                 P R+ V  I F+  + DL
Sbjct: 85  QTEGGAQTDGQQSQTQSSENSESKST----------------PKRLHVSNIPFRFRDPDL 128

Query: 62  RKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAI 121
           R+ F Q+G + +V+I+ +  G SKG+GFVTFE   DA +  ++      + +K+ +  A 
Sbjct: 129 RQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 187

Query: 122 RKQQVGIPRSSIMPAAGTMYLTTSTGYPY 150
            +  V   +  + P A    L+   G  Y
Sbjct: 188 AR--VMTNKKMVTPYANGWKLSPVVGAVY 214


>gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens]
          Length = 450

 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 19/150 (12%)

Query: 1   METESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESD 60
           + TE G QT  Q      S +    S                 P R+ V  I F+  + D
Sbjct: 153 LTTEGGAQTDGQQSQTQSSENSESKST----------------PKRLHVSNIPFRFRDPD 196

Query: 61  LRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA 120
           LR+ F Q+G + +V+I+ +  G SKG+GFVTFE   DA +  ++      + +K+ +  A
Sbjct: 197 LRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 255

Query: 121 IRKQQVGIPRSSIMPAAGTMYLTTSTGYPY 150
             +  V   +  + P A    L+   G  Y
Sbjct: 256 TAR--VMTNKKMVTPYANGWKLSPVVGAVY 283


>gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens]
          Length = 370

 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 19/150 (12%)

Query: 1   METESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESD 60
           + TE G QT  Q      S +    S                 P R+ V  I F+  + D
Sbjct: 83  LTTEGGAQTDGQQSQTQSSENSESKST----------------PKRLHVSNIPFRFRDPD 126

Query: 61  LRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA 120
           LR+ F Q+G + +V+I+ +  G SKG+GFVTFE   DA +  ++      + +K+ +  A
Sbjct: 127 LRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 185

Query: 121 IRKQQVGIPRSSIMPAAGTMYLTTSTGYPY 150
             +  V   +  + P A    L+   G  Y
Sbjct: 186 TAR--VMTNKKMVTPYANGWKLSPVVGAVY 213


>gi|133925799 RNA binding motif protein 9 isoform 3 [Homo sapiens]
          Length = 376

 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 19/150 (12%)

Query: 1   METESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESD 60
           + TE G QT  Q      S +    S                 P R+ V  I F+  + D
Sbjct: 83  LTTEGGAQTDGQQSQTQSSENSESKST----------------PKRLHVSNIPFRFRDPD 126

Query: 61  LRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA 120
           LR+ F Q+G + +V+I+ +  G SKG+GFVTFE   DA +  ++      + +K+ +  A
Sbjct: 127 LRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 185

Query: 121 IRKQQVGIPRSSIMPAAGTMYLTTSTGYPY 150
             +  V   +  + P A    L+   G  Y
Sbjct: 186 TAR--VMTNKKMVTPYANGWKLSPVVGAVY 213


>gi|72534682 RNA binding motif protein 9 isoform 1 [Homo sapiens]
          Length = 380

 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 19/150 (12%)

Query: 1   METESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESD 60
           + TE G QT  Q      S +    S                 P R+ V  I F+  + D
Sbjct: 83  LTTEGGAQTDGQQSQTQSSENSESKST----------------PKRLHVSNIPFRFRDPD 126

Query: 61  LRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA 120
           LR+ F Q+G + +V+I+ +  G SKG+GFVTFE   DA +  ++      + +K+ +  A
Sbjct: 127 LRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 185

Query: 121 IRKQQVGIPRSSIMPAAGTMYLTTSTGYPY 150
             +  V   +  + P A    L+   G  Y
Sbjct: 186 TAR--VMTNKKMVTPYANGWKLSPVVGAVY 213


>gi|34303937 RNA binding motif protein, Y-linked, family 1, member F
           [Homo sapiens]
          Length = 496

 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 24/77 (31%), Positives = 45/77 (58%)

Query: 44  PNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQ 103
           P ++F+GG++ +TNE  L+  F ++G + EV ++ DR   S+G+ F+TFE   DA+   +
Sbjct: 7   PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAK 66

Query: 104 EAEKLNYKDKKLNIGPA 120
           +    +   K + +  A
Sbjct: 67  DMNGTSLHGKAIKVEQA 83


>gi|56090529 RNA binding motif protein, Y-linked, family 1, member J
           [Homo sapiens]
          Length = 496

 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 24/77 (31%), Positives = 45/77 (58%)

Query: 44  PNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQ 103
           P ++F+GG++ +TNE  L+  F ++G + EV ++ DR   S+G+ F+TFE   DA+   +
Sbjct: 7   PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAK 66

Query: 104 EAEKLNYKDKKLNIGPA 120
           +    +   K + +  A
Sbjct: 67  DMNGTSLHGKAIKVEQA 83


>gi|34577107 RNA-binding region containing protein 1 isoform a [Homo
           sapiens]
          Length = 239

 Score = 58.9 bits (141), Expect = 5e-09
 Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 12/186 (6%)

Query: 46  RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 104
           +IFVGG+ + T ++ LRK+F  +G ++E  ++ DR  G S+GYGFVT   +  A++  ++
Sbjct: 35  KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94

Query: 105 AEKLNYKDKKLNIGPAIRKQQVGIPRSSIMPAAGTMYLTTSTGYPYTYHNGVAYFHTPEV 164
              +    +K N+  A    +   PRS     A  +     T    TY     Y + P +
Sbjct: 95  PNPI-IDGRKANVNLAYLGAK---PRSLQTGFAIGVQQLHPTLIQRTYGLTPHYIYPPAI 150

Query: 165 TSVPPPWPSRSVCSSPVMVAQPIYQQPAYHYQATTQYLPGQW-QWSVPQPSASSAPFL-Y 222
                  PS  + ++PV      Y +      A  QY P  + Q+      A++A F+ Y
Sbjct: 151 VQ-----PSVVIPAAPVPSLSSPYIEYTPASPAYAQYPPATYDQYPYAASPATAASFVGY 205

Query: 223 LQPSEV 228
             P+ V
Sbjct: 206 SYPAAV 211


>gi|4826974 RNA binding motif protein, Y-linked, family 1, member A1
           [Homo sapiens]
          Length = 496

 Score = 58.9 bits (141), Expect = 5e-09
 Identities = 24/77 (31%), Positives = 45/77 (58%)

Query: 44  PNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQ 103
           P ++F+GG++ +TNE  L+  F ++G + EV ++ DR   S+G+ F+TFE   DA+   +
Sbjct: 7   PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAK 66

Query: 104 EAEKLNYKDKKLNIGPA 120
           +    +   K + +  A
Sbjct: 67  DMNGKSLHGKAIKVEQA 83


>gi|56090527 RNA binding motif protein, Y-linked, family 1, member E
           [Homo sapiens]
          Length = 496

 Score = 58.9 bits (141), Expect = 5e-09
 Identities = 24/77 (31%), Positives = 45/77 (58%)

Query: 44  PNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQ 103
           P ++F+GG++ +TNE  L+  F ++G + EV ++ DR   S+G+ F+TFE   DA+   +
Sbjct: 7   PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAK 66

Query: 104 EAEKLNYKDKKLNIGPA 120
           +    +   K + +  A
Sbjct: 67  DMNGKSLHGKAIKVEQA 83


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.130    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,997,073
Number of Sequences: 37866
Number of extensions: 792674
Number of successful extensions: 3388
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 2723
Number of HSP's gapped (non-prelim): 630
length of query: 295
length of database: 18,247,518
effective HSP length: 102
effective length of query: 193
effective length of database: 14,385,186
effective search space: 2776340898
effective search space used: 2776340898
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.