Guide to the Human Genome
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Search of human proteins with 34013530

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|34013530 thymosin-like 3 [Homo sapiens]
         (44 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|34013530 thymosin-like 3 [Homo sapiens]                             91   2e-19
gi|11056061 thymosin, beta 4 [Homo sapiens]                            88   1e-18
gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens]               81   2e-16
gi|10863895 thymosin, beta 10 [Homo sapiens]                           69   1e-12
gi|167555119 thymosin beta15b [Homo sapiens]                           69   1e-12
gi|11496273 thymosin-like 8 [Homo sapiens]                             69   1e-12
gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo ...    68   2e-12
gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo ...    68   2e-12
gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo sa...    66   7e-12
gi|239754119 PREDICTED: hypothetical protein [Homo sapiens]            50   4e-07
gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo ...    50   4e-07
gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo ...    50   4e-07
gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo sapiens]    41   2e-04
gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo sapiens]    41   2e-04
gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo sapiens]    41   2e-04
gi|7662168 suppression of tumorigenicity 18 [Homo sapiens]             27   3.5  
gi|12711674 UPF3 regulator of nonsense transcripts homolog B iso...    27   4.6  
gi|13375901 PRKR interacting protein 1 (IL11 inducible) [Homo sa...    27   4.6  
gi|18093112 ABT1-associated protein [Homo sapiens]                     26   6.0  
gi|29789008 Huntingtin interacting protein C isoform 2 [Homo sap...    26   6.0  
gi|72534686 Huntingtin interacting protein C isoform 1 [Homo sap...    26   6.0  
gi|221219020 NYD-SP11 protein [Homo sapiens]                           26   7.8  
gi|13128860 histone deacetylase 1 [Homo sapiens]                       26   7.8  
gi|239745482 PREDICTED: hypothetical protein [Homo sapiens]            26   7.8  
gi|239745475 PREDICTED: similar to NPIP-like protein ENSP0000028...    26   7.8  
gi|239745469 PREDICTED: nuclear pore complex interacting protein...    26   7.8  
gi|194440727 dynein heavy chain domain 2 isoform 1 [Homo sapiens]      26   7.8  
gi|153945728 microtubule-associated protein 1B [Homo sapiens]          26   7.8  

>gi|34013530 thymosin-like 3 [Homo sapiens]
          Length = 44

 Score = 91.3 bits (225), Expect = 2e-19
 Identities = 44/44 (100%), Positives = 44/44 (100%)

Query: 1  MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAGES 44
          MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAGES
Sbjct: 1  MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAGES 44


>gi|11056061 thymosin, beta 4 [Homo sapiens]
          Length = 44

 Score = 88.2 bits (217), Expect = 1e-18
 Identities = 43/44 (97%), Positives = 43/44 (97%)

Query: 1  MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAGES 44
          MSDKPDMAEIEKFDK KLKKTETQEKNPLPSKETIEQEKQAGES
Sbjct: 1  MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAGES 44


>gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens]
          Length = 44

 Score = 81.3 bits (199), Expect = 2e-16
 Identities = 40/44 (90%), Positives = 41/44 (93%)

Query: 1  MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAGES 44
          MSDKP MAEIEKFDK KLKKTETQEKNPL SKETIEQE+QAGES
Sbjct: 1  MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAGES 44


>gi|10863895 thymosin, beta 10 [Homo sapiens]
          Length = 44

 Score = 68.6 bits (166), Expect = 1e-12
 Identities = 32/41 (78%), Positives = 36/41 (87%)

Query: 1  MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQA 41
          M+DKPDM EI  FDK KLKKTETQEKN LP+KETIEQEK++
Sbjct: 1  MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRS 41


>gi|167555119 thymosin beta15b [Homo sapiens]
          Length = 45

 Score = 68.6 bits (166), Expect = 1e-12
 Identities = 30/40 (75%), Positives = 37/40 (92%)

Query: 1  MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQ 40
          MSDKPD++E+EKFD+ KLKKT T+EKN LPSKETI+QEK+
Sbjct: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40


>gi|11496273 thymosin-like 8 [Homo sapiens]
          Length = 45

 Score = 68.6 bits (166), Expect = 1e-12
 Identities = 30/40 (75%), Positives = 37/40 (92%)

Query: 1  MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQ 40
          MSDKPD++E+EKFD+ KLKKT T+EKN LPSKETI+QEK+
Sbjct: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40


>gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo
          sapiens]
          Length = 158

 Score = 67.8 bits (164), Expect = 2e-12
 Identities = 34/42 (80%), Positives = 35/42 (83%)

Query: 1  MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAG 42
          MSDK +M EIEKF K KLKKTE QEKNP PSKE IEQEKQAG
Sbjct: 1  MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQAG 42


>gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo
          sapiens]
          Length = 158

 Score = 67.8 bits (164), Expect = 2e-12
 Identities = 34/42 (80%), Positives = 35/42 (83%)

Query: 1  MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAG 42
          MSDK +M EIEKF K KLKKTE QEKNP PSKE IEQEKQAG
Sbjct: 1  MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQAG 42


>gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo
           sapiens]
          Length = 281

 Score = 65.9 bits (159), Expect = 7e-12
 Identities = 33/41 (80%), Positives = 34/41 (82%)

Query: 2   SDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAG 42
           SDK +M EIEKF K KLKKTE QEKNP PSKE IEQEKQAG
Sbjct: 125 SDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQAG 165


>gi|239754119 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 45

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 23/40 (57%), Positives = 31/40 (77%)

Query: 1  MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQ 40
          MS KPDM+++ KFD+ KLKK   +EKN L  +ETI+QEK+
Sbjct: 1  MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKE 40


>gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo
          sapiens]
          Length = 45

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 23/40 (57%), Positives = 31/40 (77%)

Query: 1  MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQ 40
          MS KPDM+++ KFD+ KLKK   +EKN L  +ETI+QEK+
Sbjct: 1  MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKE 40


>gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo
          sapiens]
          Length = 45

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 23/40 (57%), Positives = 31/40 (77%)

Query: 1  MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQ 40
          MS KPDM+++ KFD+ KLKK   +EKN L  +ETI+QEK+
Sbjct: 1  MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKE 40


>gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo
          sapiens]
          Length = 43

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 1  MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEK 39
          M+ K D+ EI   DK KLK TE Q KN L +KET EQEK
Sbjct: 1  MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38


>gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo
          sapiens]
          Length = 43

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 1  MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEK 39
          M+ K D+ EI   DK KLK TE Q KN L +KET EQEK
Sbjct: 1  MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38


>gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo
          sapiens]
          Length = 43

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 1  MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEK 39
          M+ K D+ EI   DK KLK TE Q KN L +KET EQEK
Sbjct: 1  MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38


>gi|7662168 suppression of tumorigenicity 18 [Homo sapiens]
          Length = 1047

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 13  FDKPKLKKTETQEKNPLPSKETIEQEKQAGES 44
           + K   K  E +EK+P+ S E +E++K  GE+
Sbjct: 672 YSKTHGKTEEEKEKDPVSSLENLEEKKFPGEA 703


>gi|12711674 UPF3 regulator of nonsense transcripts homolog B
           isoform 2 [Homo sapiens]
          Length = 470

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 1   MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAGES 44
           + D+P +  ++K +K   K+ + +EK     KE +  E+ +G+S
Sbjct: 262 LKDEPKIKLLKKPEKGDEKELDKREKAKKLDKENLSDERASGQS 305


>gi|13375901 PRKR interacting protein 1 (IL11 inducible) [Homo
           sapiens]
          Length = 184

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 3   DKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAG 42
           +K  +A  E+  K + K+ + +EK  L  K  +EQ+KQ G
Sbjct: 114 EKNKIAAEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQEG 153


>gi|18093112 ABT1-associated protein [Homo sapiens]
          Length = 851

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 17  KLKKTETQEKNPLPSKETIEQEKQ 40
           K+KK +TQ K  + SK  +E++K+
Sbjct: 93  KIKKKKTQTKKEIDSKNLVEKKKE 116


>gi|29789008 Huntingtin interacting protein C isoform 2 [Homo
           sapiens]
          Length = 858

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 10  IEKFDKPKLKKTETQEKNPLPSKETIEQEKQAGES 44
           + K  KPK K  + + K+  P  ET  +EK   ES
Sbjct: 763 LRKAKKPKKKTKKRRHKSNSPESETDPEEKAGKES 797


>gi|72534686 Huntingtin interacting protein C isoform 1 [Homo
           sapiens]
          Length = 871

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 10  IEKFDKPKLKKTETQEKNPLPSKETIEQEKQAGES 44
           + K  KPK K  + + K+  P  ET  +EK   ES
Sbjct: 776 LRKAKKPKKKTKKRRHKSNSPESETDPEEKAGKES 810


>gi|221219020 NYD-SP11 protein [Homo sapiens]
          Length = 2873

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 9    EIEKFDKPKLKKTETQEKNPLPSKETIEQEKQ 40
            ++EK ++ K KK + ++K  +  KE + +EK+
Sbjct: 2279 QVEKEEEEKKKKKKEKKKEEVQEKEEVFEEKE 2310


>gi|13128860 histone deacetylase 1 [Homo sapiens]
          Length = 482

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 13  FDKPKLKKTETQ-EKNPLPSKETIEQEKQAGE 43
           F K K  KTE + EK+P   KE  E+EK   E
Sbjct: 437 FKKAKRVKTEDEKEKDPEEKKEVTEEEKTKEE 468


>gi|239745482 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 449

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 8   AEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQ 40
           AE+EK  KPK  + +  E++P P ++   + +Q
Sbjct: 390 AEVEKPPKPKRWRVDEVEQSPKPKRQREAEAQQ 422


>gi|239745475 PREDICTED: similar to NPIP-like protein
           ENSP00000283050 isoform 1 [Homo sapiens]
          Length = 385

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 8   AEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQ 40
           AE+EK  KPK  + +  E++P P ++   + +Q
Sbjct: 326 AEVEKPPKPKRWRVDEVEQSPKPKRQREAEAQQ 358


>gi|239745469 PREDICTED: nuclear pore complex interacting
           protein-like 1 [Homo sapiens]
          Length = 371

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 8   AEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQ 40
           AE+EK  KPK  + +  E++P P ++   + +Q
Sbjct: 312 AEVEKPPKPKRWRVDEVEQSPKPKRQREAEAQQ 344


>gi|194440727 dynein heavy chain domain 2 isoform 1 [Homo sapiens]
          Length = 3092

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 12  KFDKPKLKKTETQEKNPLPSKETIEQEK 39
           KF + KLKK E QEK     K ++E+EK
Sbjct: 732 KFFQTKLKK-ELQEKRKAARKRSLEEEK 758


>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
          Length = 2468

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 3   DKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQE 38
           +KP   E++K  K ++KK E +E      KET  +E
Sbjct: 673 EKPKKEEVKKEVKKEIKKEEKKEPKKEVKKETPPKE 708


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.295    0.118    0.302 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,828,043
Number of Sequences: 37866
Number of extensions: 56032
Number of successful extensions: 203
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 30
length of query: 44
length of database: 18,247,518
effective HSP length: 18
effective length of query: 26
effective length of database: 17,565,930
effective search space: 456714180
effective search space used: 456714180
T: 11
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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