Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 34013530
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34013530 thymosin-like 3 [Homo sapiens]
(44 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34013530 thymosin-like 3 [Homo sapiens] 91 2e-19
gi|11056061 thymosin, beta 4 [Homo sapiens] 88 1e-18
gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens] 81 2e-16
gi|10863895 thymosin, beta 10 [Homo sapiens] 69 1e-12
gi|167555119 thymosin beta15b [Homo sapiens] 69 1e-12
gi|11496273 thymosin-like 8 [Homo sapiens] 69 1e-12
gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo ... 68 2e-12
gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo ... 68 2e-12
gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo sa... 66 7e-12
gi|239754119 PREDICTED: hypothetical protein [Homo sapiens] 50 4e-07
gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo ... 50 4e-07
gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo ... 50 4e-07
gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo sapiens] 41 2e-04
gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo sapiens] 41 2e-04
gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo sapiens] 41 2e-04
gi|7662168 suppression of tumorigenicity 18 [Homo sapiens] 27 3.5
gi|12711674 UPF3 regulator of nonsense transcripts homolog B iso... 27 4.6
gi|13375901 PRKR interacting protein 1 (IL11 inducible) [Homo sa... 27 4.6
gi|18093112 ABT1-associated protein [Homo sapiens] 26 6.0
gi|29789008 Huntingtin interacting protein C isoform 2 [Homo sap... 26 6.0
gi|72534686 Huntingtin interacting protein C isoform 1 [Homo sap... 26 6.0
gi|221219020 NYD-SP11 protein [Homo sapiens] 26 7.8
gi|13128860 histone deacetylase 1 [Homo sapiens] 26 7.8
gi|239745482 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|239745475 PREDICTED: similar to NPIP-like protein ENSP0000028... 26 7.8
gi|239745469 PREDICTED: nuclear pore complex interacting protein... 26 7.8
gi|194440727 dynein heavy chain domain 2 isoform 1 [Homo sapiens] 26 7.8
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 26 7.8
>gi|34013530 thymosin-like 3 [Homo sapiens]
Length = 44
Score = 91.3 bits (225), Expect = 2e-19
Identities = 44/44 (100%), Positives = 44/44 (100%)
Query: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAGES 44
MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAGES
Sbjct: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAGES 44
>gi|11056061 thymosin, beta 4 [Homo sapiens]
Length = 44
Score = 88.2 bits (217), Expect = 1e-18
Identities = 43/44 (97%), Positives = 43/44 (97%)
Query: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAGES 44
MSDKPDMAEIEKFDK KLKKTETQEKNPLPSKETIEQEKQAGES
Sbjct: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAGES 44
>gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens]
Length = 44
Score = 81.3 bits (199), Expect = 2e-16
Identities = 40/44 (90%), Positives = 41/44 (93%)
Query: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAGES 44
MSDKP MAEIEKFDK KLKKTETQEKNPL SKETIEQE+QAGES
Sbjct: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAGES 44
>gi|10863895 thymosin, beta 10 [Homo sapiens]
Length = 44
Score = 68.6 bits (166), Expect = 1e-12
Identities = 32/41 (78%), Positives = 36/41 (87%)
Query: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQA 41
M+DKPDM EI FDK KLKKTETQEKN LP+KETIEQEK++
Sbjct: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRS 41
>gi|167555119 thymosin beta15b [Homo sapiens]
Length = 45
Score = 68.6 bits (166), Expect = 1e-12
Identities = 30/40 (75%), Positives = 37/40 (92%)
Query: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQ 40
MSDKPD++E+EKFD+ KLKKT T+EKN LPSKETI+QEK+
Sbjct: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40
>gi|11496273 thymosin-like 8 [Homo sapiens]
Length = 45
Score = 68.6 bits (166), Expect = 1e-12
Identities = 30/40 (75%), Positives = 37/40 (92%)
Query: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQ 40
MSDKPD++E+EKFD+ KLKKT T+EKN LPSKETI+QEK+
Sbjct: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40
>gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo
sapiens]
Length = 158
Score = 67.8 bits (164), Expect = 2e-12
Identities = 34/42 (80%), Positives = 35/42 (83%)
Query: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAG 42
MSDK +M EIEKF K KLKKTE QEKNP PSKE IEQEKQAG
Sbjct: 1 MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQAG 42
>gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo
sapiens]
Length = 158
Score = 67.8 bits (164), Expect = 2e-12
Identities = 34/42 (80%), Positives = 35/42 (83%)
Query: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAG 42
MSDK +M EIEKF K KLKKTE QEKNP PSKE IEQEKQAG
Sbjct: 1 MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQAG 42
>gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo
sapiens]
Length = 281
Score = 65.9 bits (159), Expect = 7e-12
Identities = 33/41 (80%), Positives = 34/41 (82%)
Query: 2 SDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAG 42
SDK +M EIEKF K KLKKTE QEKNP PSKE IEQEKQAG
Sbjct: 125 SDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQAG 165
>gi|239754119 PREDICTED: hypothetical protein [Homo sapiens]
Length = 45
Score = 50.1 bits (118), Expect = 4e-07
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQ 40
MS KPDM+++ KFD+ KLKK +EKN L +ETI+QEK+
Sbjct: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKE 40
>gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo
sapiens]
Length = 45
Score = 50.1 bits (118), Expect = 4e-07
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQ 40
MS KPDM+++ KFD+ KLKK +EKN L +ETI+QEK+
Sbjct: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKE 40
>gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo
sapiens]
Length = 45
Score = 50.1 bits (118), Expect = 4e-07
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQ 40
MS KPDM+++ KFD+ KLKK +EKN L +ETI+QEK+
Sbjct: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKE 40
>gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
Length = 43
Score = 40.8 bits (94), Expect = 2e-04
Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEK 39
M+ K D+ EI DK KLK TE Q KN L +KET EQEK
Sbjct: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
>gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
Length = 43
Score = 40.8 bits (94), Expect = 2e-04
Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEK 39
M+ K D+ EI DK KLK TE Q KN L +KET EQEK
Sbjct: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
>gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
Length = 43
Score = 40.8 bits (94), Expect = 2e-04
Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEK 39
M+ K D+ EI DK KLK TE Q KN L +KET EQEK
Sbjct: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
>gi|7662168 suppression of tumorigenicity 18 [Homo sapiens]
Length = 1047
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 13 FDKPKLKKTETQEKNPLPSKETIEQEKQAGES 44
+ K K E +EK+P+ S E +E++K GE+
Sbjct: 672 YSKTHGKTEEEKEKDPVSSLENLEEKKFPGEA 703
>gi|12711674 UPF3 regulator of nonsense transcripts homolog B
isoform 2 [Homo sapiens]
Length = 470
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAGES 44
+ D+P + ++K +K K+ + +EK KE + E+ +G+S
Sbjct: 262 LKDEPKIKLLKKPEKGDEKELDKREKAKKLDKENLSDERASGQS 305
>gi|13375901 PRKR interacting protein 1 (IL11 inducible) [Homo
sapiens]
Length = 184
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 3 DKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAG 42
+K +A E+ K + K+ + +EK L K +EQ+KQ G
Sbjct: 114 EKNKIAAEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQEG 153
>gi|18093112 ABT1-associated protein [Homo sapiens]
Length = 851
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 17 KLKKTETQEKNPLPSKETIEQEKQ 40
K+KK +TQ K + SK +E++K+
Sbjct: 93 KIKKKKTQTKKEIDSKNLVEKKKE 116
>gi|29789008 Huntingtin interacting protein C isoform 2 [Homo
sapiens]
Length = 858
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 10 IEKFDKPKLKKTETQEKNPLPSKETIEQEKQAGES 44
+ K KPK K + + K+ P ET +EK ES
Sbjct: 763 LRKAKKPKKKTKKRRHKSNSPESETDPEEKAGKES 797
>gi|72534686 Huntingtin interacting protein C isoform 1 [Homo
sapiens]
Length = 871
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 10 IEKFDKPKLKKTETQEKNPLPSKETIEQEKQAGES 44
+ K KPK K + + K+ P ET +EK ES
Sbjct: 776 LRKAKKPKKKTKKRRHKSNSPESETDPEEKAGKES 810
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 9 EIEKFDKPKLKKTETQEKNPLPSKETIEQEKQ 40
++EK ++ K KK + ++K + KE + +EK+
Sbjct: 2279 QVEKEEEEKKKKKKEKKKEEVQEKEEVFEEKE 2310
>gi|13128860 histone deacetylase 1 [Homo sapiens]
Length = 482
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 13 FDKPKLKKTETQ-EKNPLPSKETIEQEKQAGE 43
F K K KTE + EK+P KE E+EK E
Sbjct: 437 FKKAKRVKTEDEKEKDPEEKKEVTEEEKTKEE 468
>gi|239745482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 449
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 8 AEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQ 40
AE+EK KPK + + E++P P ++ + +Q
Sbjct: 390 AEVEKPPKPKRWRVDEVEQSPKPKRQREAEAQQ 422
>gi|239745475 PREDICTED: similar to NPIP-like protein
ENSP00000283050 isoform 1 [Homo sapiens]
Length = 385
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 8 AEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQ 40
AE+EK KPK + + E++P P ++ + +Q
Sbjct: 326 AEVEKPPKPKRWRVDEVEQSPKPKRQREAEAQQ 358
>gi|239745469 PREDICTED: nuclear pore complex interacting
protein-like 1 [Homo sapiens]
Length = 371
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 8 AEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQ 40
AE+EK KPK + + E++P P ++ + +Q
Sbjct: 312 AEVEKPPKPKRWRVDEVEQSPKPKRQREAEAQQ 344
>gi|194440727 dynein heavy chain domain 2 isoform 1 [Homo sapiens]
Length = 3092
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 12 KFDKPKLKKTETQEKNPLPSKETIEQEK 39
KF + KLKK E QEK K ++E+EK
Sbjct: 732 KFFQTKLKK-ELQEKRKAARKRSLEEEK 758
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 3 DKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQE 38
+KP E++K K ++KK E +E KET +E
Sbjct: 673 EKPKKEEVKKEVKKEIKKEEKKEPKKEVKKETPPKE 708
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.295 0.118 0.302
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,828,043
Number of Sequences: 37866
Number of extensions: 56032
Number of successful extensions: 203
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 30
length of query: 44
length of database: 18,247,518
effective HSP length: 18
effective length of query: 26
effective length of database: 17,565,930
effective search space: 456714180
effective search space used: 456714180
T: 11
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.