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Search of human proteins with 33469987
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33469987 asteroid homolog 1 [Homo sapiens]
(679 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33469987 asteroid homolog 1 [Homo sapiens] 1379 0.0
gi|39995071 exonuclease 1 isoform b [Homo sapiens] 41 0.003
gi|39995069 exonuclease 1 isoform a [Homo sapiens] 41 0.003
gi|18491016 exonuclease 1 isoform b [Homo sapiens] 41 0.003
gi|24308334 family with sequence similarity 120B [Homo sapiens] 35 0.23
gi|87578396 microtubule-associated protein 2 isoform 1 [Homo sap... 33 0.87
gi|145309326 laminin, gamma 1 precursor [Homo sapiens] 32 1.5
gi|39652628 oxidative stress-associated Src activator [Homo sapi... 32 1.5
gi|50348666 peroxisome proliferative activated receptor, alpha [... 32 1.9
gi|7549811 peroxisome proliferative activated receptor, alpha [H... 32 1.9
gi|145580592 nesprin-3 [Homo sapiens] 32 2.5
gi|150170718 zinc finger protein 292 [Homo sapiens] 32 2.5
gi|224589129 karyopherin 7 [Homo sapiens] 30 5.6
gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precurs... 30 5.6
gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precurs... 30 5.6
gi|109150431 ring finger protein 31 [Homo sapiens] 30 7.3
gi|150456436 hypothetical protein LOC55719 isoform 1 [Homo sapiens] 30 7.3
gi|209915547 hypothetical protein LOC55719 isoform 2 [Homo sapiens] 30 7.3
gi|65506789 solute carrier family 26, member 10 [Homo sapiens] 30 7.3
gi|110556640 DNA helicase HEL308 [Homo sapiens] 30 9.6
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 30 9.6
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 30 9.6
>gi|33469987 asteroid homolog 1 [Homo sapiens]
Length = 679
Score = 1379 bits (3569), Expect = 0.0
Identities = 679/679 (100%), Positives = 679/679 (100%)
Query: 1 MGIRGLMSFVEDHSNEFFTDLKLRDTKIVIDGYALFHRLCFSSNLDLRYGGDYDSFADVV 60
MGIRGLMSFVEDHSNEFFTDLKLRDTKIVIDGYALFHRLCFSSNLDLRYGGDYDSFADVV
Sbjct: 1 MGIRGLMSFVEDHSNEFFTDLKLRDTKIVIDGYALFHRLCFSSNLDLRYGGDYDSFADVV 60
Query: 61 QKFFESLFACNICPYVVLDGGCDISDKKLTTLKDRAREKIQMAHSLSVGGSGYVCPLLIR 120
QKFFESLFACNICPYVVLDGGCDISDKKLTTLKDRAREKIQMAHSLSVGGSGYVCPLLIR
Sbjct: 61 QKFFESLFACNICPYVVLDGGCDISDKKLTTLKDRAREKIQMAHSLSVGGSGYVCPLLIR 120
Query: 121 EVFIQVLIKLRVCFVQCFSEADRDIMTLANHWNCPVLSSDSDFCIFDLKTGFCPLNSFQW 180
EVFIQVLIKLRVCFVQCFSEADRDIMTLANHWNCPVLSSDSDFCIFDLKTGFCPLNSFQW
Sbjct: 121 EVFIQVLIKLRVCFVQCFSEADRDIMTLANHWNCPVLSSDSDFCIFDLKTGFCPLNSFQW 180
Query: 181 RNMNTIKGTQNYIPAKCFSLDAFCHHFSNMNKALLPLFAVLCGNDHVNLPIMETFLSKAR 240
RNMNTIKGTQNYIPAKCFSLDAFCHHFSNMNKALLPLFAVLCGNDHVNLPIMETFLSKAR
Sbjct: 181 RNMNTIKGTQNYIPAKCFSLDAFCHHFSNMNKALLPLFAVLCGNDHVNLPIMETFLSKAR 240
Query: 241 LPLGATSSKGRRHHRILGLLNWLSHFANPTEALDNVLKYLPKKDRENVKELLCCSMEEYQ 300
LPLGATSSKGRRHHRILGLLNWLSHFANPTEALDNVLKYLPKKDRENVKELLCCSMEEYQ
Sbjct: 241 LPLGATSSKGRRHHRILGLLNWLSHFANPTEALDNVLKYLPKKDRENVKELLCCSMEEYQ 300
Query: 301 QSQVKLQDFFQCGTYVCPDALNLGLPEWVLVALAKGQLSPFISDALVLRRTILPTQVENM 360
QSQVKLQDFFQCGTYVCPDALNLGLPEWVLVALAKGQLSPFISDALVLRRTILPTQVENM
Sbjct: 301 QSQVKLQDFFQCGTYVCPDALNLGLPEWVLVALAKGQLSPFISDALVLRRTILPTQVENM 360
Query: 361 QQPNAHRISQPIRQIIYGLLLNASPHLDKTSWNALPPQPLAFSEVERINKNIRTSIIDAV 420
QQPNAHRISQPIRQIIYGLLLNASPHLDKTSWNALPPQPLAFSEVERINKNIRTSIIDAV
Sbjct: 361 QQPNAHRISQPIRQIIYGLLLNASPHLDKTSWNALPPQPLAFSEVERINKNIRTSIIDAV 420
Query: 421 ELAKDHSDLSRLTELSLRRRQMLLLETLKVKQTILEPIPTSLKLPIAVSCYWLQHTETKA 480
ELAKDHSDLSRLTELSLRRRQMLLLETLKVKQTILEPIPTSLKLPIAVSCYWLQHTETKA
Sbjct: 421 ELAKDHSDLSRLTELSLRRRQMLLLETLKVKQTILEPIPTSLKLPIAVSCYWLQHTETKA 480
Query: 481 KLHHLQSLLLTMLVGPLIAIINSPGKEELQEDGAKMLYAEFQRVKAQTRLGTRLDLDTAH 540
KLHHLQSLLLTMLVGPLIAIINSPGKEELQEDGAKMLYAEFQRVKAQTRLGTRLDLDTAH
Sbjct: 481 KLHHLQSLLLTMLVGPLIAIINSPGKEELQEDGAKMLYAEFQRVKAQTRLGTRLDLDTAH 540
Query: 541 IFCQWQSCLQMGMYLNQLLSTPLPEPDLTRLYSGSLVHGLCQQLLASTSVESLLSICPEA 600
IFCQWQSCLQMGMYLNQLLSTPLPEPDLTRLYSGSLVHGLCQQLLASTSVESLLSICPEA
Sbjct: 541 IFCQWQSCLQMGMYLNQLLSTPLPEPDLTRLYSGSLVHGLCQQLLASTSVESLLSICPEA 600
Query: 601 KQLYEYLFNATRSYAPAEIFLPKGRSNSKKKRQKKQNTSCSKNRGRTTAHTKCWYEGNNR 660
KQLYEYLFNATRSYAPAEIFLPKGRSNSKKKRQKKQNTSCSKNRGRTTAHTKCWYEGNNR
Sbjct: 601 KQLYEYLFNATRSYAPAEIFLPKGRSNSKKKRQKKQNTSCSKNRGRTTAHTKCWYEGNNR 660
Query: 661 FGLLMVENLEEHSEASNIE 679
FGLLMVENLEEHSEASNIE
Sbjct: 661 FGLLMVENLEEHSEASNIE 679
>gi|39995071 exonuclease 1 isoform b [Homo sapiens]
Length = 846
Score = 41.2 bits (95), Expect = 0.003
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 1 MGIRGLMSFVEDHSNEFFTDLKLRDTKIVIDGYALFHRLCFSSNLDLRYGGDYDSFADVV 60
MGI+GL+ F+++ S K + + +D Y H+ + L G D +
Sbjct: 1 MGIQGLLQFIKEASEPIHVR-KYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFC 59
Query: 61 QKFFESLFACNICPYVVLDGGCDISDKKLTTLKDRAREKIQM 102
KF L + I P +V D GC + KK R R + +
Sbjct: 60 MKFVNMLLSHGIKPILVFD-GCTLPSKKEVERSRRERRQANL 100
>gi|39995069 exonuclease 1 isoform a [Homo sapiens]
Length = 803
Score = 41.2 bits (95), Expect = 0.003
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 1 MGIRGLMSFVEDHSNEFFTDLKLRDTKIVIDGYALFHRLCFSSNLDLRYGGDYDSFADVV 60
MGI+GL+ F+++ S K + + +D Y H+ + L G D +
Sbjct: 1 MGIQGLLQFIKEASEPIHVR-KYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFC 59
Query: 61 QKFFESLFACNICPYVVLDGGCDISDKKLTTLKDRAREKIQM 102
KF L + I P +V D GC + KK R R + +
Sbjct: 60 MKFVNMLLSHGIKPILVFD-GCTLPSKKEVERSRRERRQANL 100
>gi|18491016 exonuclease 1 isoform b [Homo sapiens]
Length = 846
Score = 41.2 bits (95), Expect = 0.003
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 1 MGIRGLMSFVEDHSNEFFTDLKLRDTKIVIDGYALFHRLCFSSNLDLRYGGDYDSFADVV 60
MGI+GL+ F+++ S K + + +D Y H+ + L G D +
Sbjct: 1 MGIQGLLQFIKEASEPIHVR-KYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFC 59
Query: 61 QKFFESLFACNICPYVVLDGGCDISDKKLTTLKDRAREKIQM 102
KF L + I P +V D GC + KK R R + +
Sbjct: 60 MKFVNMLLSHGIKPILVFD-GCTLPSKKEVERSRRERRQANL 100
>gi|24308334 family with sequence similarity 120B [Homo sapiens]
Length = 910
Score = 35.0 bits (79), Expect = 0.23
Identities = 59/268 (22%), Positives = 100/268 (37%), Gaps = 53/268 (19%)
Query: 1 MGIRGLMSFVEDHSNEFFTDLKLRDTKIVIDGYALFHR---------LCFSSNLDLRY-- 49
MG+RGL FV T + ++ A HR + + LRY
Sbjct: 1 MGVRGLQGFVGSTCPHICTVVNFKEL-------AEHHRSKYPGCTPTIVVDAMCCLRYWY 53
Query: 50 -------GGDYDSFADVVQKFFESLFACNICPYVVLDGGCDISDKKLTTLKDRAREKIQM 102
GG + + ++ F ++ A I DG + DK+ +K R + ++
Sbjct: 54 TPESWICGGQWREYFSALRDFVKTFTAAGIKLIFFFDGMVE-QDKRDEWVKRRLKNNREI 112
Query: 103 A--------HSLSVGGSGYVCP---LLIREVFIQVLIKLRVCFVQCFSEADRDIMTLANH 151
+ H G + + P + ++ L + +C +Q EAD ++ +
Sbjct: 113 SRIFHYIKSHKEQPGRNMFFIPSGLAVFTRFALKTLGQETLCSLQ---EADYEVASYGLQ 169
Query: 152 WNC-PVLSSDSDFCIFDLKTGFCPLNSFQWRNMNTIKGTQNYIPAKCFSLDAFCHHFSNM 210
NC +L D+D+ I+D CP S + ++ C SL +
Sbjct: 170 HNCLGILGEDTDYLIYDT----CPYFSISELCLESLDTVMLCREKLCESL--------GL 217
Query: 211 NKALLPLFAVLCGNDHVNLPIMETFLSK 238
A LPL A L GND + + E+F K
Sbjct: 218 CVADLPLLACLLGNDIIPEGMFESFRYK 245
>gi|87578396 microtubule-associated protein 2 isoform 1 [Homo
sapiens]
Length = 1827
Score = 33.1 bits (74), Expect = 0.87
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 283 KDRENVKELLCCSMEEYQ-----QSQVKLQDFFQCGTYVCPDALNLGLPEWVLVALAKGQ 337
K+ E ++++ E Q +S +DF++ GT + PD LPE + +A + +
Sbjct: 764 KEEEQIEKVKATGEESTQAEISCESPFLAKDFYKNGTVMAPD-----LPEMLDLAGTRSR 818
Query: 338 LSPFISDALVLRRTILPTQ 356
L+ +DA V RR +P++
Sbjct: 819 LASVSADAEVARRKSVPSE 837
>gi|145309326 laminin, gamma 1 precursor [Homo sapiens]
Length = 1609
Score = 32.3 bits (72), Expect = 1.5
Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 15/229 (6%)
Query: 270 TEALDNVLKYLPKKDRE--NVKELLCCSMEEYQQSQVKLQDFFQCGTYVCPDALNLGLPE 327
TEA + +L+ L +++ ++EL +Y+Q++ QD + V +A G +
Sbjct: 1209 TEAYNLLLRTLAGENQTAFEIEEL----NRKYEQAKNISQDLEKQAARVHEEAKRAG-DK 1263
Query: 328 WVLVALAKGQLSPFISDALVLRRTILPTQVENMQQPNAHRIS--QPIRQIIYGLLLNASP 385
V + + QLSP S+ L + + EN++Q ++ + +R+ + G L
Sbjct: 1264 AVEIYASVAQLSPLDSETLENEANNIKMEAENLEQLIDQKLKDYEDLREDMRGKELEVKN 1323
Query: 386 HLDK------TSWNALPPQPLAFSEVERINKNIRTSIIDAVELAKDHSDLSRLTELSLRR 439
L+K T+ L A + E K R ++ +A ++ + D R +
Sbjct: 1324 LLEKGKTEQQTADQLLARADAAKALAEEAAKKGRDTLQEANDILNNLKDFDRRVNDNKTA 1383
Query: 440 RQMLLLETLKVKQTILEPIPTSLKLPIAVSCYWLQHTETKAKLHHLQSL 488
+ L + + QTI E + + A+ TE K K H + +
Sbjct: 1384 AEEALRKIPAINQTITEANEKTREAQQALGSAAADATEAKNKAHEAERI 1432
>gi|39652628 oxidative stress-associated Src activator [Homo
sapiens]
Length = 1118
Score = 32.3 bits (72), Expect = 1.5
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 335 KGQLSPFISDALVLRRTILPTQVE---NMQQPNAHRISQPIRQIIYGLLLNASPHLDKTS 391
KG + P+I L + +E N P A + +P+RQ +YG+L + + KT
Sbjct: 565 KGLMYPYIFHVLTKGEIKIAVSIEDEANKDLPPAALLYRPVRQYVYGVLFSLAESRKKTE 624
Query: 392 -----WNALPPQ 398
N LPP+
Sbjct: 625 RLAFRKNRLPPE 636
>gi|50348666 peroxisome proliferative activated receptor, alpha
[Homo sapiens]
Length = 468
Score = 32.0 bits (71), Expect = 1.9
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 542 FCQWQSCLQMGMYLNQLLSTPLPEPDLTRLYSGSLVHGLCQQLLASTSVESLLSICPEAK 601
+C++ CL +GM N + +P + +L + L C+ + + L S+ AK
Sbjct: 155 YCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEILT---CEHDIEDSETADLKSL---AK 208
Query: 602 QLYE-YLFNATRSYAPAEIFLPKGRSNS 628
++YE YL N + A + L SN+
Sbjct: 209 RIYEAYLKNFNMNKVKARVILSGKASNN 236
>gi|7549811 peroxisome proliferative activated receptor, alpha [Homo
sapiens]
Length = 468
Score = 32.0 bits (71), Expect = 1.9
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 542 FCQWQSCLQMGMYLNQLLSTPLPEPDLTRLYSGSLVHGLCQQLLASTSVESLLSICPEAK 601
+C++ CL +GM N + +P + +L + L C+ + + L S+ AK
Sbjct: 155 YCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEILT---CEHDIEDSETADLKSL---AK 208
Query: 602 QLYE-YLFNATRSYAPAEIFLPKGRSNS 628
++YE YL N + A + L SN+
Sbjct: 209 RIYEAYLKNFNMNKVKARVILSGKASNN 236
>gi|145580592 nesprin-3 [Homo sapiens]
Length = 975
Score = 31.6 bits (70), Expect = 2.5
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 452 QTILEPIPTSLKLPIAVSCYWLQHTETKAKLHHL--QSLLLTMLVGPLIAIINSPGKEEL 509
Q ++ + ++L + + Q + + LH++ Q++LL L+ ++ N G +
Sbjct: 130 QKMMVTLEPHIELQLGLKEKQWQLSHAQVLLHNVDNQAVLLDRLLEEAASLFNRIGDPSV 189
Query: 510 QEDGAKMLYAEFQRVKAQTRLGTRLDL 536
ED K + AE+ VKA+ + R+DL
Sbjct: 190 DEDAQKRMKAEYDAVKAKAQ--KRVDL 214
>gi|150170718 zinc finger protein 292 [Homo sapiens]
Length = 2723
Score = 31.6 bits (70), Expect = 2.5
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 603 LYEYLFNATRSYAPAEIFLPKGRSNSKKKRQKKQNTSCSKNRGRTTAHTKCWYEG 657
L ++FN A + P+ + ++ K N SK++ R T H++C EG
Sbjct: 2273 LLRHIFNKHNDKHKAHLIRPRRLTPGQENMSSKANQEKSKSKHRGTKHSRCGKEG 2327
>gi|224589129 karyopherin 7 [Homo sapiens]
Length = 516
Score = 30.4 bits (67), Expect = 5.6
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 406 ERINKNIRTSIIDAVELAKDHSDLSRLTELSLRRRQMLLLET-----LKVKQTILEPIPT 460
+RI + + T ++ + + S+L+ LT SLR ++ T + + +L +P
Sbjct: 274 KRIGQVVNTGVLPRLVVLMTSSELNVLTP-SLRTVGNIVTGTDEQTQMAIDAGMLNVLPQ 332
Query: 461 SL---KLPIAVSCYWLQHTETKAKLHHLQSLLLTMLVGPLIAIINSPGKEELQEDGAKML 517
L K I W HH+Q LL ++ PL+A++ + G+ ++Q++ M+
Sbjct: 333 LLQHNKPSIQKEAAWALSNVAAGPCHHIQQLLAYDVLPPLVALLKN-GEFKVQKEAVWMV 391
>gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precursor
[Homo sapiens]
Length = 808
Score = 30.4 bits (67), Expect = 5.6
Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 387 LDKTSWNALPPQPLAFSEVERINKNIRTSIIDAVELAKDHSDLS 430
LD T+ N L QPL F EVER NI AKD LS
Sbjct: 294 LDYTTGNILTQQPLDFEEVERYTINIE---------AKDRGSLS 328
>gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 30.4 bits (67), Expect = 5.6
Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 387 LDKTSWNALPPQPLAFSEVERINKNIRTSIIDAVELAKDHSDLS 430
LD T+ N L QPL F EVER NI AKD LS
Sbjct: 294 LDYTTGNILTQQPLDFEEVERYTINIE---------AKDRGSLS 328
>gi|109150431 ring finger protein 31 [Homo sapiens]
Length = 1072
Score = 30.0 bits (66), Expect = 7.3
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 332 ALAKGQLSPFISDALVLRRTILPTQVENMQQPNAHRISQPIRQIIYGLLLNASPHLDKTS 391
A + QL P ++ +L L L + + NAH +P + L A L+K
Sbjct: 28 AFSLEQLRPLLASSLPLAARYLQLDAARLVRCNAH--GEPRNYL--NTLSTALNILEKYG 83
Query: 392 WNALPPQPLAFSEVERINKNIRTSIIDAVELAKDHSDLSRLTE 434
N L PQ + + N + S +DAV+ +D L TE
Sbjct: 84 RNLLSPQRPRYWRGVKFNNPVFRSTVDAVQGGRDVLRLYGYTE 126
>gi|150456436 hypothetical protein LOC55719 isoform 1 [Homo sapiens]
Length = 1173
Score = 30.0 bits (66), Expect = 7.3
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 605 EYLFNATRSYAPAEIFLPKGRSNSKKKRQK----------KQNTSCSKNRGRTTAHTK 652
+YL T Y P+ LPK + KKK + + N ++RG+T A +K
Sbjct: 141 KYLAKGTNIYVPSSYHLPKEMKSLKKKHRSPERRKSLFIHENNEKNDRDRGKTNADSK 198
>gi|209915547 hypothetical protein LOC55719 isoform 2 [Homo sapiens]
Length = 1186
Score = 30.0 bits (66), Expect = 7.3
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 605 EYLFNATRSYAPAEIFLPKGRSNSKKKRQK----------KQNTSCSKNRGRTTAHTK 652
+YL T Y P+ LPK + KKK + + N ++RG+T A +K
Sbjct: 141 KYLAKGTNIYVPSSYHLPKEMKSLKKKHRSPERRKSLFIHENNEKNDRDRGKTNADSK 198
>gi|65506789 solute carrier family 26, member 10 [Homo sapiens]
Length = 563
Score = 30.0 bits (66), Expect = 7.3
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 549 LQMGMYLNQL--LSTPLPEPDLTRLYSGSLVHGLCQQL--LASTSVESLLSICPEAKQLY 604
L +GM++ QL LST L EP + L SG+ +H L QL L S+ + K L
Sbjct: 129 LMLGMFVLQLGVLSTFLSEPVVKALTSGAALHVLLSQLPSLLGLSLPRQIGCFSLFKTLA 188
Query: 605 EYLFNATRSYAPAEI 619
L RS +PAE+
Sbjct: 189 SLLTALPRS-SPAEL 202
>gi|110556640 DNA helicase HEL308 [Homo sapiens]
Length = 1101
Score = 29.6 bits (65), Expect = 9.6
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 13/112 (11%)
Query: 21 LKLRDTKIVIDGYALFHRLCFSSNLDLRYGG-----DYDSFADVVQKFFESLFACNICPY 75
LK+ DT +D A + + FS L+ +Y D D +V + + CP
Sbjct: 528 LKINDTIYEVDSKAE-NGMTFSRLLNYKYSDTLKKMDPDHLVALVTEVIPNYSCLVFCPS 586
Query: 76 V-----VLDGGCDISDKKLTTLKDRAREKIQMAHSLSVGGSGYVCPLLIREV 122
V + C K+ LK + +EK ++ +L G+G +CP+L R +
Sbjct: 587 KKNCENVAEMICKFLSKEY--LKHKEKEKCEVIKNLKNIGNGNLCPVLKRTI 636
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
Length = 1758
Score = 29.6 bits (65), Expect = 9.6
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 536 LDTAHIFCQWQSCLQMGMYLNQLLSTPLPEPDLTRLYSGSLVHGLCQQLLASTSVESLLS 595
LDTA + +Q+G+ NQ S+P P + SGS ++ S +S
Sbjct: 1643 LDTAAV-------VQVGISRNQSHSSPSVSPSRSHSPSGSQTRSHSSSASSAESQDSKKK 1695
Query: 596 ICPEAKQLYEY--LFNATRSYAPAEIFLPKGRSNSKKKRQKKQNTSCSKNRGRTTAHTK 652
+ K+ ++ + +A E+ L K + + KK++ K+N K + + K
Sbjct: 1696 KKKKEKKKHKKHKKHKKHKKHAGTEVELEKSQKHKHKKKKSKKNKDKEKEKEKDDQKVK 1754
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
Length = 1792
Score = 29.6 bits (65), Expect = 9.6
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 536 LDTAHIFCQWQSCLQMGMYLNQLLSTPLPEPDLTRLYSGSLVHGLCQQLLASTSVESLLS 595
LDTA + +Q+G+ NQ S+P P + SGS ++ S +S
Sbjct: 1677 LDTAAV-------VQVGISRNQSHSSPSVSPSRSHSPSGSQTRSHSSSASSAESQDSKKK 1729
Query: 596 ICPEAKQLYEY--LFNATRSYAPAEIFLPKGRSNSKKKRQKKQNTSCSKNRGRTTAHTK 652
+ K+ ++ + +A E+ L K + + KK++ K+N K + + K
Sbjct: 1730 KKKKEKKKHKKHKKHKKHKKHAGTEVELEKSQKHKHKKKKSKKNKDKEKEKEKDDQKVK 1788
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,119,923
Number of Sequences: 37866
Number of extensions: 1098783
Number of successful extensions: 2676
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2661
Number of HSP's gapped (non-prelim): 31
length of query: 679
length of database: 18,247,518
effective HSP length: 109
effective length of query: 570
effective length of database: 14,120,124
effective search space: 8048470680
effective search space used: 8048470680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.