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Search of human proteins with 33286416
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33286416 Hermansky-Pudlak syndrome 1 protein isoform a [Homo
sapiens]
(700 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33286416 Hermansky-Pudlak syndrome 1 protein isoform a [Homo ... 1413 0.0
gi|33286414 Hermansky-Pudlak syndrome 1 protein isoform c [Homo ... 630 e-180
gi|239746200 PREDICTED: similar to hCG2001482 [Homo sapiens] 39 0.016
gi|154350224 hypothetical protein LOC84923 isoform 2 [Homo sapiens] 38 0.036
gi|210032580 SET domain containing 1B [Homo sapiens] 36 0.14
gi|18643383 inositol 1,4,5-trisphosphate 3-kinase C [Homo sapiens] 35 0.18
gi|167466198 intercellular adhesion molecule 1 precursor [Homo s... 34 0.40
gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens] 34 0.53
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 33 0.69
gi|7669528 neuregulin 2 isoform 2 [Homo sapiens] 33 0.90
gi|7669532 neuregulin 2 isoform 4 [Homo sapiens] 33 0.90
gi|7669530 neuregulin 2 isoform 3 [Homo sapiens] 33 0.90
gi|4758832 neuregulin 2 isoform 1 [Homo sapiens] 33 0.90
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 33 1.2
gi|5031855 lymphocyte cytosolic protein 2 [Homo sapiens] 32 1.5
gi|109637784 GLIS family zinc finger 3 isoform a [Homo sapiens] 32 1.5
gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo s... 32 1.5
gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo ... 32 1.5
gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo ... 32 1.5
gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo s... 32 1.5
gi|7657154 hairy/enhancer-of-split related with YRPW motif-like ... 32 1.5
gi|109637782 GLIS family zinc finger 3 isoform b [Homo sapiens] 32 1.5
gi|5032179 tripartite motif-containing 28 protein [Homo sapiens] 32 2.0
gi|122937512 myosin VIIB [Homo sapiens] 32 2.0
gi|14149716 protein phosphatase 1, regulatory subunit 12C [Homo ... 32 2.6
gi|45827809 mitogen-activated protein kinase kinase kinase 6 [Ho... 31 3.4
gi|56549696 E1A binding protein p400 [Homo sapiens] 31 3.4
gi|130979214 adrenocortical dysplasia homolog isoform 3 [Homo sa... 31 3.4
gi|130978956 adrenocortical dysplasia homolog isoform 1 [Homo sa... 31 3.4
gi|130978962 adrenocortical dysplasia homolog isoform 2 [Homo sa... 31 3.4
>gi|33286416 Hermansky-Pudlak syndrome 1 protein isoform a [Homo
sapiens]
Length = 700
Score = 1413 bits (3658), Expect = 0.0
Identities = 700/700 (100%), Positives = 700/700 (100%)
Query: 1 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT 60
MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
Sbjct: 1 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT 60
Query: 61 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF 120
MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
Sbjct: 61 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF 120
Query: 121 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC 180
GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
Sbjct: 121 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC 180
Query: 181 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL 240
ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
Sbjct: 181 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL 240
Query: 241 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY 300
VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY
Sbjct: 241 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY 300
Query: 301 FTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVPHCPVPSGPRRIFLDANVKES 360
FTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVPHCPVPSGPRRIFLDANVKES
Sbjct: 301 FTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVPHCPVPSGPRRIFLDANVKES 360
Query: 361 YCPLVPHTMYCLPLWQGINLVLLTRSPSAPLALVLSQLMDGFSMLEKKLKEGPEPGASLR 420
YCPLVPHTMYCLPLWQGINLVLLTRSPSAPLALVLSQLMDGFSMLEKKLKEGPEPGASLR
Sbjct: 361 YCPLVPHTMYCLPLWQGINLVLLTRSPSAPLALVLSQLMDGFSMLEKKLKEGPEPGASLR 420
Query: 421 SQPLVGDLRQRMDKFVKNRGAQEIQSTWLEFKAKAFSKSEPGSSWELLQACGKLKRQLCA 480
SQPLVGDLRQRMDKFVKNRGAQEIQSTWLEFKAKAFSKSEPGSSWELLQACGKLKRQLCA
Sbjct: 421 SQPLVGDLRQRMDKFVKNRGAQEIQSTWLEFKAKAFSKSEPGSSWELLQACGKLKRQLCA 480
Query: 481 IYRLNFLTTAPSRGGPHLPQHLQDQVQRLMREKLTDWKDFLLVKSRRNITMVSYLEDFPG 540
IYRLNFLTTAPSRGGPHLPQHLQDQVQRLMREKLTDWKDFLLVKSRRNITMVSYLEDFPG
Sbjct: 481 IYRLNFLTTAPSRGGPHLPQHLQDQVQRLMREKLTDWKDFLLVKSRRNITMVSYLEDFPG 540
Query: 541 LVHFIYVDRTTGQMVAPSLNCSQKTSSELGKGPLAAFVKTKVWSLIQLARRYLQKGYTTL 600
LVHFIYVDRTTGQMVAPSLNCSQKTSSELGKGPLAAFVKTKVWSLIQLARRYLQKGYTTL
Sbjct: 541 LVHFIYVDRTTGQMVAPSLNCSQKTSSELGKGPLAAFVKTKVWSLIQLARRYLQKGYTTL 600
Query: 601 LFQEGDFYCSYFLWFENDMGYKLQMIEVPVLSDDSVPIGMLGGDYYRKLLRYYSKNRPTE 660
LFQEGDFYCSYFLWFENDMGYKLQMIEVPVLSDDSVPIGMLGGDYYRKLLRYYSKNRPTE
Sbjct: 601 LFQEGDFYCSYFLWFENDMGYKLQMIEVPVLSDDSVPIGMLGGDYYRKLLRYYSKNRPTE 660
Query: 661 AVRCYELLALHLSVIPTDLLVQQAGQLARRLWEASRIPLL 700
AVRCYELLALHLSVIPTDLLVQQAGQLARRLWEASRIPLL
Sbjct: 661 AVRCYELLALHLSVIPTDLLVQQAGQLARRLWEASRIPLL 700
>gi|33286414 Hermansky-Pudlak syndrome 1 protein isoform c [Homo
sapiens]
Length = 324
Score = 630 bits (1625), Expect = e-180
Identities = 315/321 (98%), Positives = 315/321 (98%)
Query: 1 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT 60
MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
Sbjct: 1 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT 60
Query: 61 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF 120
MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
Sbjct: 61 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF 120
Query: 121 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC 180
GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
Sbjct: 121 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC 180
Query: 181 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL 240
ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
Sbjct: 181 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL 240
Query: 241 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY 300
VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY
Sbjct: 241 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY 300
Query: 301 FTPAPSPGDQSSGSTIWLEGG 321
FTPAPSPGDQSSG GG
Sbjct: 301 FTPAPSPGDQSSGEDRRKAGG 321
>gi|239746200 PREDICTED: similar to hCG2001482 [Homo sapiens]
Length = 153
Score = 38.9 bits (89), Expect = 0.016
Identities = 44/129 (34%), Positives = 55/129 (42%), Gaps = 19/129 (14%)
Query: 241 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFS-LP-E 298
+ L PS S A IQPSP + S+ IP + +G SAE S S LP
Sbjct: 8 ITHLSPSSSGATPTIQPSP-SSTDSRMIPSSPQPETITHPSSGSPSAELTPSSHSTLPSS 66
Query: 299 EYFTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVPHCPVP--SGPRRIFLDAN 356
E TP SP S GT P+ + T QTL P P P +GPR + + +
Sbjct: 67 ESLTPHWSPTSHSP--------GTEPLTS------TDQTLEPPGPAPGDTGPRELHRNPS 112
Query: 357 VKESYCPLV 365
V C LV
Sbjct: 113 VVVVVCLLV 121
>gi|154350224 hypothetical protein LOC84923 isoform 2 [Homo sapiens]
Length = 186
Score = 37.7 bits (86), Expect = 0.036
Identities = 22/77 (28%), Positives = 34/77 (44%)
Query: 252 EDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPSPGDQS 311
E+D P+ RSS+N Q +W S+G G S+ + + S + P+ P S
Sbjct: 82 EEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTM 141
Query: 312 SGSTIWLEGGTPPMDAL 328
+GS+ P AL
Sbjct: 142 AGSSPNTPQPVPEQSAL 158
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 35.8 bits (81), Expect = 0.14
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 19/114 (16%)
Query: 246 PSESTAEDDIQPSP------RRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEE 299
P E AED +P +++S++ +P P P G S+ S +P
Sbjct: 1308 PPEPLAEDHPPHTPGLCGSLAKSQSTETVPATPGGEP----PLSGGSSGLSLSSPQVPGS 1363
Query: 300 YFT-PAPSPGDQSSGSTIWLEGGTPPMD---ALQIAEDTLQTLVPHCPVPSGPR 349
F+ PAPSP S G TP D +E + L+P CP+P+G R
Sbjct: 1364 PFSYPAPSPSLSSGGLP-----RTPGRDFSFTPTFSEPSGPLLLPVCPLPTGRR 1412
>gi|18643383 inositol 1,4,5-trisphosphate 3-kinase C [Homo sapiens]
Length = 683
Score = 35.4 bits (80), Expect = 0.18
Identities = 22/68 (32%), Positives = 28/68 (41%)
Query: 260 RRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPSPGDQSSGSTIWLE 319
RR + Q P A +P GG A TE S E P+PG +S + W +
Sbjct: 33 RRRQPGQQRPGPGAGAPAGRPEGGGPWARTEGSSLHSEPERAGLGPAPGTESPQAEFWTD 92
Query: 320 GGTPPMDA 327
G T P A
Sbjct: 93 GQTEPAAA 100
>gi|167466198 intercellular adhesion molecule 1 precursor [Homo
sapiens]
Length = 532
Score = 34.3 bits (77), Expect = 0.40
Identities = 53/194 (27%), Positives = 72/194 (37%), Gaps = 37/194 (19%)
Query: 227 SSLRPADLLALILLVQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSS 286
SS RPA L AL++L+ L+P A+ + PS P GGS
Sbjct: 4 SSPRPA-LPALLVLLGALFPGPGNAQTSVSPS------------------KVILPRGGSV 44
Query: 287 AETETDSFSLPEEYFTPAPSPGDQSSGSTIWLEGGTPPMDAL-QIAEDTLQTLVPHCPVP 345
T + S P+ P P + + L G + L + ED+ +CP
Sbjct: 45 LVTCSTSCDQPKLLGIETPLPKKE-----LLLPGNNRKVYELSNVQEDSQPMCYSNCPDG 99
Query: 346 SGPRRIFLDANVKESYCPLVPHTMYCLPLWQ--GINLVLLTR-SPSAPLALVLSQLMDGF 402
+ FL L P LP WQ G NL L + AP A + L+ G
Sbjct: 100 QSTAKTFLTVYWTPERVELAP-----LPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRG- 153
Query: 403 SMLEKKLKEGPEPG 416
EK+LK P G
Sbjct: 154 ---EKELKREPAVG 164
>gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens]
Length = 1349
Score = 33.9 bits (76), Expect = 0.53
Identities = 36/148 (24%), Positives = 57/148 (38%), Gaps = 7/148 (4%)
Query: 201 RGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILLVQDLYPSESTAEDDIQPSPR 260
R E +LH +L S+L S +S +L A L +E +QP
Sbjct: 1185 RRAEPSLHQVVLQPSRLSPLTQSPLSSRTGSPELAARARPRPGLLQQAEMSEITLQPPAA 1244
Query: 261 RARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPSPGDQSSGSTIWLEG 320
+ S ++ P SP + +G S +L Y +P P P G ++ + G
Sbjct: 1245 VSFSRKSTP--STGSPSQSSRSGSPSYRPAMGFTTLATGYPSPPPGPAPAGPGDSLDVFG 1302
Query: 321 GTPPMDALQIAEDTLQTLVPHCPVPSGP 348
TP + E+ L+ P P P+ P
Sbjct: 1303 QTP--SPRRTGEELLR---PETPPPTLP 1325
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 33.5 bits (75), Expect = 0.69
Identities = 42/150 (28%), Positives = 59/150 (39%), Gaps = 14/150 (9%)
Query: 227 SSLRPADLLALIL----LVQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSP---HST 279
SS RPA + L +Q +P + E D P A + + Q P HS
Sbjct: 1650 SSARPARRVLLPTPPCGALQPGFPLQHDGERDPFTCPGFASQDKALGSAQYEDPRNLHSA 1709
Query: 280 GPTGGSSAETETDSF--SLPEEYFTPAPSPGDQSSGSTIWLEGGTPP-MDALQIAEDTLQ 336
G + + ETE D + P E P P PG + GS +G P AL ++
Sbjct: 1710 GRSSSPAGETEGDREPQARPGEGTAPLPPPGQKVGGSQPPFQGQREPGPHALGMS----G 1765
Query: 337 TLVPHCPVPSGPRRIFLDANVKESYCPLVP 366
P+ P P GP F + N+ + P P
Sbjct: 1766 LHGPNFPGPRGPAPPFPEENIASNDGPRGP 1795
>gi|7669528 neuregulin 2 isoform 2 [Homo sapiens]
Length = 844
Score = 33.1 bits (74), Expect = 0.90
Identities = 22/92 (23%), Positives = 34/92 (36%)
Query: 258 SPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPSPGDQSSGSTIW 317
+P R ++ P+ + +P GP G D + Y+ PA PG + +
Sbjct: 629 APISYRLAEQQPLLRHPAPPGPGPGPGPGPGPGADMQRSYDSYYYPAAGPGPRRGTCALG 688
Query: 318 LEGGTPPMDALQIAEDTLQTLVPHCPVPSGPR 349
G+ P +I ED C P PR
Sbjct: 689 GSLGSLPASPFRIPEDDEYETTQECAPPPPPR 720
>gi|7669532 neuregulin 2 isoform 4 [Homo sapiens]
Length = 852
Score = 33.1 bits (74), Expect = 0.90
Identities = 22/92 (23%), Positives = 34/92 (36%)
Query: 258 SPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPSPGDQSSGSTIW 317
+P R ++ P+ + +P GP G D + Y+ PA PG + +
Sbjct: 637 APISYRLAEQQPLLRHPAPPGPGPGPGPGPGPGADMQRSYDSYYYPAAGPGPRRGTCALG 696
Query: 318 LEGGTPPMDALQIAEDTLQTLVPHCPVPSGPR 349
G+ P +I ED C P PR
Sbjct: 697 GSLGSLPASPFRIPEDDEYETTQECAPPPPPR 728
>gi|7669530 neuregulin 2 isoform 3 [Homo sapiens]
Length = 858
Score = 33.1 bits (74), Expect = 0.90
Identities = 22/92 (23%), Positives = 34/92 (36%)
Query: 258 SPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPSPGDQSSGSTIW 317
+P R ++ P+ + +P GP G D + Y+ PA PG + +
Sbjct: 643 APISYRLAEQQPLLRHPAPPGPGPGPGPGPGPGADMQRSYDSYYYPAAGPGPRRGTCALG 702
Query: 318 LEGGTPPMDALQIAEDTLQTLVPHCPVPSGPR 349
G+ P +I ED C P PR
Sbjct: 703 GSLGSLPASPFRIPEDDEYETTQECAPPPPPR 734
>gi|4758832 neuregulin 2 isoform 1 [Homo sapiens]
Length = 850
Score = 33.1 bits (74), Expect = 0.90
Identities = 22/92 (23%), Positives = 34/92 (36%)
Query: 258 SPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPSPGDQSSGSTIW 317
+P R ++ P+ + +P GP G D + Y+ PA PG + +
Sbjct: 635 APISYRLAEQQPLLRHPAPPGPGPGPGPGPGPGADMQRSYDSYYYPAAGPGPRRGTCALG 694
Query: 318 LEGGTPPMDALQIAEDTLQTLVPHCPVPSGPR 349
G+ P +I ED C P PR
Sbjct: 695 GSLGSLPASPFRIPEDDEYETTQECAPPPPPR 726
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 32.7 bits (73), Expect = 1.2
Identities = 49/198 (24%), Positives = 73/198 (36%), Gaps = 22/198 (11%)
Query: 240 LVQDLYPSESTAED----DIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFS 295
LVQ P+ +T E +QP+P+ A + + P+ P + T +
Sbjct: 602 LVQPATPAAATGEAAPVLTVQPAPQ-APPAVSTPLPLGLQQ----PQAQQPPQAPTPQAA 656
Query: 296 LPEEYFTPAPSPGDQSSGSTIWLEGGTPP--MDALQIAEDTLQTLVP----HCPVPSGPR 349
P + TP PSPG SS I L G PP + +D+LQ +P P+ +
Sbjct: 657 APPQATTPQPSPGLASSPEKIVL--GQPPSATPTAILTQDSLQMFLPQERSQQPLSAEGP 714
Query: 350 RIFLDANVKESYCPLVPHTMYCLPLWQGINLVLLTRSPSAPLALVLSQLMDGFSMLEKKL 409
+ + A+V S P P+ +G L P AP +
Sbjct: 715 HLSVPASVIVSAPPPAQDPAPATPVAKGAGL-----GPQAPDSQASPAPAPQIPAAAPLK 769
Query: 410 KEGPEPGASLRSQPLVGD 427
GP SL Q +GD
Sbjct: 770 GPGPSSSPSLPHQAPLGD 787
>gi|5031855 lymphocyte cytosolic protein 2 [Homo sapiens]
Length = 533
Score = 32.3 bits (72), Expect = 1.5
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 230 RPADLLALILLVQDLYPSESTAEDDIQPSPRR------ARSSQNIPVQQAWSPH-STGPT 282
RP AL+ + + +PS ST + P P + S+ + P + P+ S GP+
Sbjct: 327 RPLPQPALLPMSSNTFPSRSTKPSPMNPLPSSHMPGAFSESNSSFPQSASLPPYFSQGPS 386
Query: 283 GGSSAETETDSFSLPEEYFTPAPSPGDQSS 312
E +F LP PSP ++ +
Sbjct: 387 NRPPIRAEGRNFPLPLPNKPRPPSPAEEEN 416
>gi|109637784 GLIS family zinc finger 3 isoform a [Homo sapiens]
Length = 930
Score = 32.3 bits (72), Expect = 1.5
Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 18/148 (12%)
Query: 225 SASSLRPADLLALILLVQDLYPSES----TAEDDIQPSPRRARSSQNIPVQQAWSPHSTG 280
S++ L P DLL L VQ L P+ S AE + SP + P+ + +G
Sbjct: 664 SSTELHP-DLLTDCLTVQSLQPATSPRDAAAEGTVGRSPGPGPDLYSAPIFSSNYSSRSG 722
Query: 281 PTGGSSAETETDSFSLPEEYFTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVP 340
G+ +P + PSPG GS PP+ A+ + P
Sbjct: 723 TAAGA----------VPPPHPVSHPSPGHNVQGSPHNPSSQLPPLTAVDAGAERFAPSAP 772
Query: 341 HCPVPSGPRRIFLDANVKESYCPLVPHT 368
P PRR+ +++ + P P+T
Sbjct: 773 -SPHHISPRRVPAPSSILQRTQP--PYT 797
>gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 32.3 bits (72), Expect = 1.5
Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 10/97 (10%)
Query: 241 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAW-----SPHSTGPTGG----SSAETET 291
VQ P P P+ A S+ Q A +PH TGP G + + T
Sbjct: 600 VQPTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPGPAPHPTGPPGPIPVPAPPQIAT 659
Query: 292 DSFSLPEEYFTPAPS-PGDQSSGSTIWLEGGTPPMDA 327
+ L + P P PG + G + G PP DA
Sbjct: 660 STSLLAAQSLVPPPGLPGSSTPGVLPYFPPGLPPPDA 696
>gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 32.3 bits (72), Expect = 1.5
Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 10/97 (10%)
Query: 241 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAW-----SPHSTGPTGG----SSAETET 291
VQ P P P+ A S+ Q A +PH TGP G + + T
Sbjct: 600 VQPTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPGPAPHPTGPPGPIPVPAPPQIAT 659
Query: 292 DSFSLPEEYFTPAPS-PGDQSSGSTIWLEGGTPPMDA 327
+ L + P P PG + G + G PP DA
Sbjct: 660 STSLLAAQSLVPPPGLPGSSTPGVLPYFPPGLPPPDA 696
>gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 32.3 bits (72), Expect = 1.5
Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 10/97 (10%)
Query: 241 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAW-----SPHSTGPTGG----SSAETET 291
VQ P P P+ A S+ Q A +PH TGP G + + T
Sbjct: 600 VQPTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPGPAPHPTGPPGPIPVPAPPQIAT 659
Query: 292 DSFSLPEEYFTPAPS-PGDQSSGSTIWLEGGTPPMDA 327
+ L + P P PG + G + G PP DA
Sbjct: 660 STSLLAAQSLVPPPGLPGSSTPGVLPYFPPGLPPPDA 696
>gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo
sapiens]
Length = 677
Score = 32.3 bits (72), Expect = 1.5
Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 10/97 (10%)
Query: 241 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAW-----SPHSTGPTGG----SSAETET 291
VQ P P P+ A S+ Q A +PH TGP G + + T
Sbjct: 461 VQPTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPGPAPHPTGPPGPIPVPAPPQIAT 520
Query: 292 DSFSLPEEYFTPAPS-PGDQSSGSTIWLEGGTPPMDA 327
+ L + P P PG + G + G PP DA
Sbjct: 521 STSLLAAQSLVPPPGLPGSSTPGVLPYFPPGLPPPDA 557
>gi|7657154 hairy/enhancer-of-split related with YRPW motif-like
[Homo sapiens]
Length = 328
Score = 32.3 bits (72), Expect = 1.5
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 14/59 (23%)
Query: 255 IQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPSPGDQSSG 313
+ PS R ARSS P+ Q+ SP GPTG ++ + P+P S G
Sbjct: 260 VAPSSRAARSSHIAPLLQSSSPTPPGPTGSAA--------------YVAVPTPNSSSPG 304
>gi|109637782 GLIS family zinc finger 3 isoform b [Homo sapiens]
Length = 775
Score = 32.3 bits (72), Expect = 1.5
Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 18/148 (12%)
Query: 225 SASSLRPADLLALILLVQDLYPSES----TAEDDIQPSPRRARSSQNIPVQQAWSPHSTG 280
S++ L P DLL L VQ L P+ S AE + SP + P+ + +G
Sbjct: 509 SSTELHP-DLLTDCLTVQSLQPATSPRDAAAEGTVGRSPGPGPDLYSAPIFSSNYSSRSG 567
Query: 281 PTGGSSAETETDSFSLPEEYFTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVP 340
G+ +P + PSPG GS PP+ A+ + P
Sbjct: 568 TAAGA----------VPPPHPVSHPSPGHNVQGSPHNPSSQLPPLTAVDAGAERFAPSAP 617
Query: 341 HCPVPSGPRRIFLDANVKESYCPLVPHT 368
P PRR+ +++ + P P+T
Sbjct: 618 -SPHHISPRRVPAPSSILQRTQP--PYT 642
>gi|5032179 tripartite motif-containing 28 protein [Homo sapiens]
Length = 835
Score = 32.0 bits (71), Expect = 2.0
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 179 LCELCIEALER------HVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPA 232
LCE C+EA +R H +++ + R GE ++ + H L+ F S + R
Sbjct: 173 LCETCVEAHQRVKYTKDHTVRSTGPAKSRDGERTVYCNVHKHEPLVLFCESCDTLTCRDC 232
Query: 233 DLLA 236
L A
Sbjct: 233 QLNA 236
>gi|122937512 myosin VIIB [Homo sapiens]
Length = 2116
Score = 32.0 bits (71), Expect = 2.0
Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 6/133 (4%)
Query: 456 FSKSEPGSSWELLQACGKL--KRQLCAIYRLNFLTTAPSRGGPHLPQHLQDQVQRLMREK 513
F S W LL C + Y LNF+ P+ GP + L+ +R +
Sbjct: 1122 FKTSSLARGWILLSLCLGCFPPSERFMKYLLNFIGQGPATYGPFCAERLRRTYANGVRAE 1181
Query: 514 LTDWKDFLLVKSRRNITMVSYLEDFPGLVHFIYVD-RTTGQMVAPSLNCSQKTSSELGKG 572
W + VKS+++I + L L + VD +T + + + Q S LG
Sbjct: 1182 PPTWLELQAVKSKKHIPIQVILATGESLT--VPVDSASTSREMCMHIAHKQGLSDHLGFS 1239
Query: 573 PLAAFVKTKVWSL 585
L V K WSL
Sbjct: 1240 -LQVAVYDKFWSL 1251
>gi|14149716 protein phosphatase 1, regulatory subunit 12C [Homo
sapiens]
Length = 782
Score = 31.6 bits (70), Expect = 2.6
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 13/92 (14%)
Query: 257 PSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTP--APSPGDQSSGS 314
PSP+ + P + + TG +G P E T AP G Q S S
Sbjct: 403 PSPKSPVQLEEAPFSRRFGLLKTGSSGALG----------PPERRTAEGAPGAGLQRSAS 452
Query: 315 TIWLEGGTPPMDALQIAEDTLQTLVPHCPVPS 346
+ WLEG + L++A T T P P PS
Sbjct: 453 SSWLEGTSTQAKELRLARIT-PTPSPKLPEPS 483
>gi|45827809 mitogen-activated protein kinase kinase kinase 6 [Homo
sapiens]
Length = 1288
Score = 31.2 bits (69), Expect = 3.4
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 257 PSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPSPGDQSSGSTI 316
PS SQ P QA S H P + T +PEE P+ ++SSG ++
Sbjct: 934 PSANSTTQSQTFPCPQAPSQHPPSPPKRCLSYGGTSQLRVPEEPAAEEPASPEESSGLSL 993
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 31.2 bits (69), Expect = 3.4
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 241 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY 300
+Q L P TA+ + P+P+ A+ + QQ + P STGP ++A T LP
Sbjct: 505 LQQLMP---TAQGGMPPTPQAAQLAGQRQSQQQYDP-STGPPVQNAASLHTPLPQLPGR- 559
Query: 301 FTPAPSPGDQSSGSTIWLEGGTPP--MDALQIAEDTLQTLVPHCPVPSGP 348
P G ++ + L+ P ++A + ++T P+ P+P+ P
Sbjct: 560 ---LPPAGVPTAALSSALQFAQQPQVVEAQTQLQIPVKTQQPNVPIPAPP 606
>gi|130979214 adrenocortical dysplasia homolog isoform 3 [Homo
sapiens]
Length = 528
Score = 31.2 bits (69), Expect = 3.4
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 15/134 (11%)
Query: 239 LLVQDLYPSESTAEDDIQP-SPRRARSSQNIPVQQAWSPHSTGPT---GGSSAETETDSF 294
L++ L P + T ++ P P S + SP S+G G S+E S
Sbjct: 318 LILSSLGPCQRTQGPELPPPDPALQDLSLTLIASPPSSPSSSGTPALPGHMSSEESGTSI 377
Query: 295 SLPEEYFTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVPHCP-VPSGPRRIFL 353
SL AP PG +SS + P A+ A TL PH PS P +
Sbjct: 378 SLLPALSLAAPDPGQRSS---------SQPSPAICSAPATLTPRSPHASRTPSSPLQSCT 428
Query: 354 DANVKESYCPLVPH 367
+ S+ P PH
Sbjct: 429 PSLSPRSHVP-SPH 441
>gi|130978956 adrenocortical dysplasia homolog isoform 1 [Homo
sapiens]
Length = 544
Score = 31.2 bits (69), Expect = 3.4
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 15/134 (11%)
Query: 239 LLVQDLYPSESTAEDDIQP-SPRRARSSQNIPVQQAWSPHSTGPT---GGSSAETETDSF 294
L++ L P + T ++ P P S + SP S+G G S+E S
Sbjct: 321 LILSSLGPCQRTQGPELPPPDPALQDLSLTLIASPPSSPSSSGTPALPGHMSSEESGTSI 380
Query: 295 SLPEEYFTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVPHCP-VPSGPRRIFL 353
SL AP PG +SS + P A+ A TL PH PS P +
Sbjct: 381 SLLPALSLAAPDPGQRSS---------SQPSPAICSAPATLTPRSPHASRTPSSPLQSCT 431
Query: 354 DANVKESYCPLVPH 367
+ S+ P PH
Sbjct: 432 PSLSPRSHVP-SPH 444
>gi|130978962 adrenocortical dysplasia homolog isoform 2 [Homo
sapiens]
Length = 541
Score = 31.2 bits (69), Expect = 3.4
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 15/134 (11%)
Query: 239 LLVQDLYPSESTAEDDIQP-SPRRARSSQNIPVQQAWSPHSTGPT---GGSSAETETDSF 294
L++ L P + T ++ P P S + SP S+G G S+E S
Sbjct: 318 LILSSLGPCQRTQGPELPPPDPALQDLSLTLIASPPSSPSSSGTPALPGHMSSEESGTSI 377
Query: 295 SLPEEYFTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVPHCP-VPSGPRRIFL 353
SL AP PG +SS + P A+ A TL PH PS P +
Sbjct: 378 SLLPALSLAAPDPGQRSS---------SQPSPAICSAPATLTPRSPHASRTPSSPLQSCT 428
Query: 354 DANVKESYCPLVPH 367
+ S+ P PH
Sbjct: 429 PSLSPRSHVP-SPH 441
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,922,006
Number of Sequences: 37866
Number of extensions: 1396619
Number of successful extensions: 4310
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 4270
Number of HSP's gapped (non-prelim): 73
length of query: 700
length of database: 18,247,518
effective HSP length: 109
effective length of query: 591
effective length of database: 14,120,124
effective search space: 8344993284
effective search space used: 8344993284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.